LOC120557312


Basic Information

Item Value
gene id LOC120557312
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 40848815 ~ 40931383 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU59759
GGAAGAAGGTTCCTCAGAAAGATGATGATCTGAAGGAGGTGTTCCTGTATGATGCAGGCATTCATTACAACAACGGTCGTCCAGGTCAGAGTGAAGAGTTCAAAGGTCGAGTCTCTCATTTTAAAGATCAATTGAAACACGGCAACGCCTCCATAATCATCAGAAATACAAAGATATCTGACAGTGGAAACTACACCTGTTATTTTCCCCGTCTTCATCAAACATTCAACATTGAACTTGTTGTTGACCGATCAGGAGAAATCCAAGCCGCGACACCGAAGCCATCTGTAACAATCCTTGATGCCACAGCTGGCTGGGTCCTGCTGCAGTGTGAGGTTCATGGTGCTTCTCTAACATCTGGAGTGGAGTGGAAGGACAGTGCTGGAAACACACTTCCTGCTGAGGAGACACGGACCCCAGAGAGAGACCACTACTACATCACCCTCAACACTACTGTTACCAGGACCAGCCGTTACCGCTGTGTAGTAACACAGGAGGAAATCAGCCATCAGACTCACGCTGAGATCTTTGTGCCTATCAGTGGTTCTCGTCAGCAGGGAAACGGTCCATGCGAAAAGTGTTCAGAGATGCTACGTCCACAAAATGGTCGATGACTTTAAGTCTGTGTGTTTACTTGTACATCTGTCTTTGTGAGAATCAGTTTGAATTTTTGAATTTGTGTGTTTGAGGGTTCAGACCAGAGGCCCTTcctagtacaggcctcaggtacGGTGTTCATTTTAGGACATCCTCAGATCTCAGACTCAGgtgttaaactcaaacacaaCAGTCTTGACAATATACCAAGAAACTTTGGAGCAGATTGTCACATTTTATTGCTGTTCATATTTACCCTCAATTCACATTACTTTGGGAAACTGTATTGTTTGGATTCACTCAATATGA
>XM_039797515.1
TTTCCGGAGCTAACTTATTACACCAACTTGTTTGCTAACAGCAGTGTGAGCTAACGTCGTTTGTTTATTTGCGCTACTTCGAGGAAACATGTTTGGTGTTAAACTTTGGGTGaccctcttctttcctctgaCTTTAAATGGATTAATACTCGGACAGGAACACGGTCCAGGTGGTGTTAGAGTGGTTGTGAAAGAAGACAGAGATGGCATGTTACCCTGTTCTCTCAGCACCAAGGAGAGCATTGTATCAGGGGTCTTTGTCTGGAGGAAAGTTGCTCAGAAAGATGAAGGTCTGAAGGAGGTGTTCCTGTATGACGTAGGCAAACATTACAACAACGGTCGTCCAGGTCAGAGTGAGCAGTTCAAAGGTCGAGTCTCTCATTTTCAAGATGAACTGGATCACGGCAACGCCTCCATAATCATCAGAAATACAAAGATATCTGACAGTGGAAACTACACCTGTGATTTTCCTCGTCTTCGCCCACGTCAAACATTCTCCATTGAACTTGTTGTTGCCGCGACACCGAAGCCATCTGTAACAATCCTTGATGCCACAGCTGGCTGGGTCCTGCTGCAGTGTGAGGTTCATGGTGCTTCTCTAACATCTGGAGTGGAGTGGAAGGACAGTGCTGGAAACACACTTCCTGCTGAGGAGACACGGACCCCAGAGAGAGACCACTACTACATCACCCTCAACACTACTGTTACCAGGACCAGCCGTTACCGCTGTGTAGTAACACAGGAGGAAATCAGCCATCAGACTCACGCTGAGATCTTTGTGCCTATCAGTGGGAAAGTGTGTGAGGACTCATGCAGTAAAGAGGCCGGATGGTTGTTTGGTGGATTTTTTTTGGGAGTTCTGAGTGTTGCTATAGTTCTAGCTCTGCTTGTAGTCACAAATACCATCACAATACGCTGCTATAAAGGTTCTCGTCAGCAGGGAAACGGTCCATGCGAAAAGTGTTCAGAGATGCTACGTCCACAAAATGGTCGATGACTTTAAGTCTGTGTGTTTACTTGTACATCTGTCTTTGTGAGAATCAGTTTGAATTTTTGAATTTGTGTGTTTGAGGGTTCAGACCAGAGGCCCTTcctagtacaggcctcaggtacGGTGTTCATTTTAGGACATCCTCAGATCTCAGACTCAGgtgttaaactcaaacacaaCAGTCTTGACAATATACCAAGAAACTTTGGAGCAGATTGTCACATTTTATTGCTGTTCATATTTACCCTCAATTCACATTACTTTGGGAAACTGTATTGTTTGGATTCACTCAATATGATAGAAAGTTTAATTCAGAGTATTATGTGatacattttataattattttaaccaaattttatttacatgagtcaaagtttttgaaaaagaaTCCAACCTTTTTGGAGCTGGCTTCCAATATTAAACAATACATATTTTCCATATCTGAatgtacaaacaaaaaaacatagatCATATTACTACCTCTGTAAGCTGTACAAAATATTTATATgaagttttttgctttgttttgattTCTGTCCTTTAGTAACccctagggatgcaccgatccgactttttcagtcccgataccagggctttgtgtatctgtcgatacccgataccgatccgataccgttgttgaaataataattacctgtatgctccgctgcatgcttgaagtgatgTGTCTTTAAtgttagcacggccgagtaatgttagagcgacgggcaacaacCGTGTCTAAATTATGTCAgattttttagaaacaaaaacttgggaacaacagacggctcctctcttgagcacacgttgttctggtgtatctccgctctttcttcatcctctagcta
>XM_039797516.1
TTTCCGGAGCTAACTTATTACACCAACTTGTTTGCTAACAGCAGTGTGAGCTAACGTCGTTTGTTTATTTGCGCTACTTCGAGGAAACATGTTTGGTGTTAAACTTTGGGTGaccctcttctttcctctgaCTTTAAATGGATTAATACTCGGACAGGAACACGGTCCAGGTGGTGTTAGAGTGGTTGTGAAAGAAGACAGAGATGGCATGTTACCCTGTTCTCTCAGCACCAAGGAGAGCATTGTATCAGGGGTCTTTGTCTGGAGGAAAGTTGCTCAGAAAGATGAAGGTCTGAAGGAGGTGTTCCTGTATGACGTAGGCAAACATTACAACAACGGTCGTCCAGGTCAGAGTGAGCAGTTCAAAGGTCGAGTCTCTCATTTTCAAGATGAACTGGATCACGGCAACGCCTCCATAATCATCAGAAATACAAAGATATCTGACAGTGGAAACTACACCTGTGATTTTCCTCGTCTTCGCCCACGTCAAACATTCTCCATTGAACTTGTTGTTGCCGCGACACCGAAGCCATCTGTAACAATCCTTGATGCCACAGCTGGCTGGGTCCTGCTGCAGTGTGAGGTTCATGGTGCTTCTCTAACATCTGGAGTGGAGTGGAAGGACAGTGCTGGAAACACACTTCCTGCTGAGGAGACACGGACCCCAGAGAGAGACCACTACTACATCACCCTCAACACTACTGTTACCAGGACCAGCCGTTACCGCTGTGTAGTAACACAGGAGGAAATCAGCCATCAGACTCACGCTGAGATCTTTGTGCCTATCAGTGGTTCTCGTCAGCAGGGAAACGGTCCATGCGAAAAGTGTTCAGAGATGCTACGTCCACAAAATGGTCGATGACTTTAAGTCTGTGTGTTTACTTGTACATCTGTCTTTGTGAGAATCAGTTTGAATTTTTGAATTTGTGTGTTTGAGGGTTCAGACCAGAGGCCCTTcctagtacaggcctcaggtacGGTGTTCATTTTAGGACATCCTCAGATCTCAGACTCAGgtgttaaactcaaacacaaCAGTCTTGACAATATACCAAGAAACTTTGGAGCAGATTGTCACATTTTATTGCTGTTCATATTTACCCTCAATTCACATTACTTTGGGAAACTGTATTGTTTGGATTCACTCAATATGATAGAAAGTTTAATTCAGAGTATTATGTGatacattttataattattttaaccaaattttatttacatgagtcaaagtttttgaaaaagaaTCCAACCTTTTTGGAGCTGGCTTCCAATATTAAACAATACATATTTTCCATATCTGAatgtacaaacaaaaaaacatagatCATATTACTACCTCTGTAAGCTGTACAAAATATTTATATgaagttttttgctttgttttgattTCTGTCCTTTAGTAACccctagggatgcaccgatccgactttttcagtcccgataccagggctttgtgtatctgtcgatacccgataccgatccgataccgttgttgaaataataattacctgtatgctccgctgcatgcttgaagtgatgTGTCTTTAAtgttagcacggccgagtaatgttagagcgacgggcaacaacCGTGTCTAAATTATGTCAgattttttagaaacaaaaacttgggaacaacagacggctcctctcttgagcacacgttgttctggtgtatctccgctctttcttcatcctctagcta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU59759 False 906 lncRNA 0.45 4 40848815 40930833
XM_039797515.1 True 1839 mRNA 0.42 5 40922588 40931383
XM_039797516.1 False 1704 mRNA 0.42 4 40922588 40931383

Neighbor

gene id symbol gene type direction distance location
LOC120556655 NA coding upstream 27718 40807228 ~ 40821097 (+)
LOC120557677 NA coding upstream 50766 40738891 ~ 40798049 (+)
LOC120557681 NA coding upstream 114338 40721696 ~ 40734477 (+)
LOC120557684 NA coding upstream 132694 40684822 ~ 40716121 (+)
LOC120557675 LOC107573218 coding upstream 201301 40645188 ~ 40647514 (+)
LOC120557311 NA coding downstream 30325 40961708 ~ 40989920 (+)
LOC120557130 NA coding downstream 426758 41358141 ~ 41360354 (+)
LOC120556884 NA coding downstream 431120 41362503 ~ 41365014 (+)
LOC120557132 NA coding downstream 475160 41406543 ~ 41412621 (+)
LOC120556749 NA coding downstream 693824 41625207 ~ 41628189 (+)
G44712 NA non-coding upstream 54017 40729150 ~ 40794798 (+)
G44632 NA non-coding upstream 65003 40738910 ~ 40783812 (+)
LOC120557697 NA non-coding upstream 73757 40716801 ~ 40775058 (+)
LOC120557698 NA non-coding upstream 76381 40759809 ~ 40772434 (+)
G44713 NA non-coding upstream 93612 40737276 ~ 40755203 (+)
G44633 NA non-coding downstream 18538 40949921 ~ 41025342 (+)
G44751 NA non-coding downstream 114461 41045844 ~ 41077132 (+)
G44757 NA non-coding downstream 373395 41304778 ~ 41305781 (+)
G44758 NA non-coding downstream 374525 41305908 ~ 41306120 (+)
G45095 smpd4 non-coding downstream 449839 41381222 ~ 41387063 (+)
LOC120557687 NA other upstream 180073 40666199 ~ 40668742 (+)
LOC120557674 NA other upstream 300967 40519942 ~ 40547848 (+)
G44690 NA other upstream 342245 40480676 ~ 40506570 (+)
LOC120557692 NA other upstream 342759 40504194 ~ 40506056 (+)
LOC120557666 NA other upstream 417474 40156208 ~ 40431341 (+)
LOC120557139 LOC106956008,LOC103153866,LOC103464266,LOC108411580,LOC102236494 other downstream 819620 41751003 ~ 41768313 (+)
G45186 NA other downstream 938347 41869730 ~ 41880367 (+)
dynlrb1 dynlrb1,LOC106565026 other downstream 965612 41896995 ~ 41902631 (+)
map1lc3a map1lc3a,LOC107551126 other downstream 974146 41905529 ~ 41912117 (+)
G45237 NA other downstream 1346902 42278285 ~ 42301895 (+)

Expression


Co-expression Network