LOC120557697


Basic Information

Item Value
gene id LOC120557697
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 40716801 ~ 40775058 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU59762
ttttatgtatgaTTCTCAGCTCAAGGAAACAAGATTGCATTACCGTTGtcacttaaagggatatttcaccgttggaaTGATGAATATgaatttaaattgggtcactggtgtagtagaaatgtgaattcttttttttttttttttattggtgcatTTTGTTTATGATCCTCAGCTAAAGGAAACAAGACTGCATCAGCGTTGTCACTTAATTTTAAAGGGACATATAATGAAAAACTCTCATTTTCAGTCATGGTGCACAAACATTTGAGTATCTGGAGGGCCGACCAACCCAAAACCTGAAATCAAACAACCCAGCCAGTTCTTTGTGGGCATCCTCAATCTGATGTAATTCAACAAGCCATTCAGATTCAGCTCCTCTTCCTATGTCACATGCAGGCTGATTAGAATATACTGTTCCTCATCtccaccatggatgtattataagatatTTCCATTTCGGCACCCTTTATCATCATGAGTGGCCGCGTCAGCCTCGTCAAGCCAGGAAGGTAATCATATACAGGAAGGCCACAGCACAGCCGCATACTTTACAAAATGGaacagatttcaaaataaaacacccaggtttatggtgattttggatgttttgacttcacacacacacacacagagagagagagaaaaaaaaaaaaaaaagagaaaagagagagagaagtacggaaaagaaaatattaaagtaaGTAATAGTGTTTTctgaacattaaaacatgtaaacatgttctcatACAAATtgaaaatacaagtatgaacctgaaaatgagtataatatgtctcctttaaaagaaaatgttgataTACCTGCTGTCAGGGTCGGTGGTTTGATCCCCGGCTCTTCTTGTCCACTCAtccaagtgtccttgagcaagacactgaaccccaaattacTCCTGATGGTCAGACAGCTCCTTGTATGGTAGCTCACTGTCATTGGGgtgtgaatggatgaatgacATTAACTGCTTTATTAATATTATCCTGCTGCTTGTGGTTGTTAAAAGTCCTAACTGAGCTAGATGTGATGGGCATtagaaaacagaacttttaagAACAAAGCCTGCTGTCGCGCTGtaaaagaaatgtgaatttttttgtagccaaagtaaaatataatttattttgatatttgtgTCATTGACATTGCTTAGGACAATCATGTTCTGCTTCTTTTTATGTCTTAAGGTGCTAAGTCAAGAGTTTGTCAGGTTGAACTAGACACTGTTGTTGGCTGTGATATCAGaattgtgtatgtacagtatgttttatcTGATGCACTCTCAGGGCATCCTGTAATTTCAGGCAGCTCTTCATCATTTCTATCTAAATAAAAGATGAAATATGTCAAA
>XR_005639004.1
AGGCAACAGCTTGAAAAGCTCAACCAGATGACCGTAAAGGCCTGATGACAAAGATCACAGATAAATCTGCATGGAGGGAACTTCTCCAATCTCCGTGTCTTCGTGGACTCCTCGTCTGACAATTTCTTCTGTACTGAGACCGCTGTGAGGTCTCACACACTCAGCAAGGAAATTACTGGAATTATTTAGATAAAGACAGTCAATATagaatctgtgttttttttttaaataactacatTTTGTTTATGATCCTAAAGGAAACAAGACTGCGTCAGCATTGTCACTTAATTTTAAAGGGGACATATAATGAAAAACTCTCATTTTCAGTCATGGTGCACAAACATTTGAGTATCTGGAGGGCCGACCAACCCAAAACCTGAAATCAAACAACCCAGCCAGTTCTTTGTGGGCATCCTCAATCTGATGTAATTCAACAAGCCATTCAGATTCAGCTCCTCTTCCTATGTCACATGCAGGCTGATTAGAATATACTGTTCCTCATCtccaccatggatgtattataagatatTTCCATTTCGGCACCCTTTATCATCATGAGTGGCCGCGTCAGCCTCGTCAAGCCAGGAAGGTAATCATATACAGGAAGGCCACAGCACAGCCGCATACTTTACAAAATGGaacagatttcaaaataaaacacccaggtttatggtgattttggatgttttgact

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU59762 True 1364 lncRNA 0.37 4 40716801 40775058
XR_005639004.1 False 693 lncRNA 0.41 3 40773029 40774307

Neighbor

gene id symbol gene type direction distance location
LOC120557684 NA coding upstream 680 40684822 ~ 40716121 (+)
LOC120557675 LOC107573218 coding upstream 69287 40645188 ~ 40647514 (+)
LOC120557127 NA coding upstream 133096 40554950 ~ 40583705 (+)
LOC120557124 NA coding upstream 270155 39791011 ~ 40446646 (+)
LOC120557118 NA coding upstream 1403119 39294637 ~ 39313682 (+)
LOC120556655 NA coding downstream 32170 40807228 ~ 40821097 (+)
LOC120557310 NA coding downstream 97791 40872849 ~ 40914254 (+)
LOC120557311 NA coding downstream 186650 40961708 ~ 40989920 (+)
LOC120557130 NA coding downstream 583083 41358141 ~ 41360354 (+)
LOC120556884 NA coding downstream 587445 41362503 ~ 41365014 (+)
LOC120557700 NA non-coding upstream 60155 40655859 ~ 40656646 (+)
G44634 NA non-coding upstream 89490 40443873 ~ 40627311 (+)
G44731 NA non-coding downstream 52362 40827420 ~ 40867607 (+)
G44633 NA non-coding downstream 174863 40949921 ~ 41025342 (+)
G44751 NA non-coding downstream 270786 41045844 ~ 41077132 (+)
G44757 NA non-coding downstream 529720 41304778 ~ 41305781 (+)
G44758 NA non-coding downstream 530850 41305908 ~ 41306120 (+)
LOC120557687 NA other upstream 48059 40666199 ~ 40668742 (+)
LOC120557674 NA other upstream 168953 40519942 ~ 40547848 (+)
G44690 NA other upstream 210231 40480676 ~ 40506570 (+)
LOC120557692 NA other upstream 210745 40504194 ~ 40506056 (+)
LOC120557666 NA other upstream 285460 40156208 ~ 40431341 (+)
LOC120557312 NA other downstream 73757 40848815 ~ 40931383 (+)
LOC120557139 LOC106956008,LOC103153866,LOC103464266,LOC108411580,LOC102236494 other downstream 975945 41751003 ~ 41768313 (+)
G45186 NA other downstream 1094672 41869730 ~ 41880367 (+)
dynlrb1 dynlrb1,LOC106565026 other downstream 1121937 41896995 ~ 41902631 (+)
map1lc3a map1lc3a,LOC107551126 other downstream 1130471 41905529 ~ 41912117 (+)

Expression


Co-expression Network