G45095 (smpd4)


Basic Information

Item Value
gene id G45095
gene name smpd4
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 41381222 ~ 41387063 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU60340
TcagacagttaaagaaatggacacaGCGACCCCATATGCTTCTACGGAGACCAGTGGAAGTGAATTAGAAGTACTTTtctggtgatggctgagcgttactgcgcagcctcaaactgagcttgacgatGTAGatgcaacctgtctgaaagctgtaagtcttctggtagctgtgccaagagaaatctcaatcaatccgaatcttgcagagacggagagcgtaggtatatgtaaggagataacataggcacaggctacttattgctaactaaaatgctaattaacataagtaattaaacttaaacagcgaatgtaagtcgaaactgcctgcgagcttctcctgactatacggtaatttctctactgtgcgacagaaagtcgtgtggttatgacccaatcgttagcctatttttataaaagcgtctgctacggagccataatgtgagatagatacaaggtaatggagccttttatacattgtcgtgtttctttagaaataaacaacggacaaatagagtctttaaacgcttcagatgtaaagttggTTGTAATGCTCTTTGAATGGAAATGACTGccctaattatgtatttaatAAGTATGATGTCGAACAATTGTTTGTATTACATgatatttgtaaaataaaagtaaaaaaaaaagaattatttcATTAAACAAAATTGGAAGATTTTGCCTGTTCCACATGATAACATTTGTAGTCCTATTAAGCCACGTGTAGGCAACTGCCTTTTTTTAAGACAAATACAGGTTTCAAAATTCACGAGTGGGGTGTTTACTTACATATTTTATATGAAAGAACTAAGGATGTAACGATACATTCAAGTCAAAATTCAATAAGATTCGCCAAACAATTTTTCTCACGTTGTGACGTCTGAAGTCAAACGAGCGAAATAAAAACTAGCTAATGTCCTGGGCCTTTTAAAAACCGCAGCACaattcatttctttttatatcAACCGGTTTtacttttacacatttatattgCTTTTAACCGTTTCGCGATGCATCGTTTCATCCCTACAAAGAACAAAAATGAACATCTCTTTACTTGTCTTAACCACAAATTTTATGTGAGGCATCTAATGAAAAAACCATTTGAAAAACCCATTGATTTTGAGACGAGAGAagcagaagtgcaaaaaagtgcaaaaactcATTTCCGATCTTTAGGACTCATTCCTGCAGCACTCTATTGTGCATTACAAACAACCAATCACTTCCACCTTTTTCATAGGGGGGCGATGTCTCACCGTGTTTGTCAATTTGAGAGAAGTACCCTTGACTTTGACTGTAACTGACTGCGGTTTACCTCCAGGAGGCCCCAGAGGGGCGGGGGTGAATGAAAAGGTAAAAGTACTTGGTAGGTGTGGCGGGTCCCAGAGCCTGGTGGGGCGTAGGGTTGGCACGGCATGCTGGACATACTGAGGCGGTACTGCAGCAGCGCCAGCTGTTCACCCGTTACCACCTTTACCTGAGGAGACTGCAGCTTCTGGTACATCTCTAAGGagtagtgatggagccagatctccacaaacatcttaggaaaaacacaca

Function

symbol description
smpd4 Predicted to enable sphingomyelin phosphodiesterase D activity and sphingomyelin phosphodiesterase activity. Predicted to be involved in cellular response to tumor necrosis factor; ceramide biosynthetic process; and phospholipid catabolic process. Predicted to be located in endoplasmic reticulum; nuclear envelope; and sarcolemma. Orthologous to human SMPD4 (sphingomyelin phosphodiesterase 4).

NR:

description
PREDICTED: sphingomyelin phosphodiesterase 4 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU60340 True 1569 lncRNA 0.40 2 41381222 41387063

Neighbor

gene id symbol gene type direction distance location
LOC120556884 NA coding upstream 16208 41362503 ~ 41365014 (+)
LOC120557130 NA coding upstream 20868 41358141 ~ 41360354 (+)
LOC120557311 NA coding upstream 391302 40961708 ~ 40989920 (+)
LOC120557310 NA coding upstream 466968 40872849 ~ 40914254 (+)
LOC120556655 NA coding upstream 560125 40807228 ~ 40821097 (+)
LOC120557132 NA coding downstream 19480 41406543 ~ 41412621 (+)
LOC120556749 NA coding downstream 238144 41625207 ~ 41628189 (+)
LOC120557138 NA coding downstream 352262 41739325 ~ 41743157 (+)
LOC120556746 LOC106676760 coding downstream 571230 41958293 ~ 41961170 (+)
LOC120556737 NA coding downstream 576301 41963364 ~ 41987577 (+)
G44758 NA non-coding upstream 75102 41305908 ~ 41306120 (+)
G44757 NA non-coding upstream 75441 41304778 ~ 41305781 (+)
G44751 NA non-coding upstream 304090 41045844 ~ 41077132 (+)
G44633 NA non-coding upstream 355880 40949921 ~ 41025342 (+)
G44731 NA non-coding upstream 513615 40827420 ~ 40867607 (+)
G45119 LOC106676758 non-coding downstream 100269 41487332 ~ 41501091 (+)
G45174 NA non-coding downstream 315571 41702634 ~ 41703077 (+)
G45193 NA non-coding downstream 468597 41855660 ~ 41858286 (+)
G45190 NA non-coding downstream 525101 41912164 ~ 41915303 (+)
LOC120556755 NA non-coding downstream 552151 41939214 ~ 41957098 (+)
LOC120557312 NA other upstream 449839 40848815 ~ 40931383 (+)
LOC120557687 NA other upstream 712480 40666199 ~ 40668742 (+)
LOC120557674 NA other upstream 833374 40519942 ~ 40547848 (+)
G44690 NA other upstream 874652 40480676 ~ 40506570 (+)
LOC120557139 LOC106956008,LOC103153866,LOC103464266,LOC108411580,LOC102236494 other downstream 363940 41751003 ~ 41768313 (+)
G45186 NA other downstream 482667 41869730 ~ 41880367 (+)
dynlrb1 dynlrb1,LOC106565026 other downstream 509932 41896995 ~ 41902631 (+)
map1lc3a map1lc3a,LOC107551126 other downstream 518466 41905529 ~ 41912117 (+)
G45237 NA other downstream 891222 42278285 ~ 42301895 (+)

Expression


Co-expression Network