G45119 (LOC106676758)


Basic Information

Item Value
gene id G45119
gene name LOC106676758
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 41487332 ~ 41501091 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU60379
AATCTCTGCAAATgacacacactggctgctgatggtccagacagaagagtttgagtttctcagagtgcagactgcagagagcctctgaagctctctgatctctctccaGTAAGAAGGCCTCACACAGGTTCTTTAACACCAGGTTACAAGGTGGTTCATACAAAGATCTTTTCTTACAAACTGGACACTCCTGTGTTGGTTTCTCTGTCCACCAGCTCTGCAGACAGTctttacagaagctgtggctacatGACAGAAGAACAGGATCTCTGAAGACATCATGACAGACCGGACAGCGGAGATCCTCCTCTGATCTGGAAGCCATTTGGTCTCTG
>TU60381
CTGGAATAGAATTGAAAATAAagttagtttgatttaaataatGATTGTCTGCTCAAACATTCAGTTATATTTTTGTGATCAAATCAGCTTCTACAAAGTGTTTTCTGTCTTCCTGGCTCTACACACACTAGTCAAACTAataaaacatcaacaacaatttaaaataaaaacagtattgataaaaaagcaaaaggctaaATGAACCAAAagataaaaaactaaattatataattttacacatgaaaaaaataaaacttgcttTTGACTGCATCACTTGAATTTTTGGGTTGTATTGTAAATCggttggataaaagtgtcagctagatgaattacaaaaaataggtaaacaaaaacaaagaatgtcAAACTAAAACAATAAGTAAAACTAAACATATATCTTAAACGAAAAAACAAggatatttttgtattaatgaGAAATTAGGACAGGTGCAGATTAAGAGGTTACATTCAGCGACTTTTCCCTTTAAGAAATAAACATCAACATGAATATAATCATCCTCTTTATCTCTAACTGCTCTGctccactgtcacacacactttcactggtgATATCTTCAGTGGGACTTCATCCCAAGTGCTAATATACGGAAACATCTTCTCAGTGAAAAGCAATTGAAATATCCTTCTACGGAAAGTTTGTATGGCggtgaaggtgtgtatgtgtgtgttagtatcagCATCAGAGAACGACAGCTCTCCTGTCTTCACGTCCAGAGTCACTCTGATCCTCTGGAGCTTCTTCTGCAGTACGAGAACAGTGGCTGGAGCTTGTGCTGACCGTGCTGAGTATTTACCTTTATGGAACAATATTCTCCGTAATCCAGACTGTatgcctcccttcctctggacaGACTCTGCTAACACTCCCAGTGACCAGCCTGTACTGTCTCCAACCTCGAcatcccagctgtgagtccctgagttaaagccctcagagcccaggacAGAGCATAGATAATCAAACCTCTCTGGGTTATCAGGAAGCTGCTGTCTCTTTCCTAGTCTCACACTGGTCAGATCTTCAGACAGGATAAGGTTGGGTTTAGCAGTGTTTGGATCCAGAACCACAGGAGTGTAGGAGACcatgtccttcatcttgttccagatgttgaagctcaggttgcccaggtgtttggcctcgtctatcagagctcctgagagcagctgtggatcatccagcagggggcgctgctggactctttccactgcagccttgtagttgatcaggaatgagacgtcttcagctctcagctgctcctctgtggctctgactgtgtctgaaagagctgctatctctctgctcagagcctccatcttcttcttcatcctctgactcttctgctcctcttccttccACAGAGCAGCCatcctggcctcctcttcctcttctagaatctggtgaagcttcttaaactgatccttaatctgtgtctctgtgcgttgGGCCTGGACTTTCATGTGTTTTGCTGTTTGATCAAACTTCACTCTAACTTGTTCAAAAACATTTATCTTCTCCTTTAAGGGCTCCAGAGTTTCCTGAAGCTCCTTCCTGTGTTGTCGTGCAGCTTCATCGATGGGTCTGATTCTGTGGTTggagtgtgtttctgaatgCAGACAGATGAGacacactggctgctgatggtccagacagaagagtttgagtttctcagagtgcagactgcagagagcctctgaagctctctgatctctctccaGTAAGAAGGCCTCACACAGGTTCTTCAACACCAGGTTACAAGGCGGTTCATACAAAGATCTTTTCTTACAAACTGGACACTCCTGTGTTGGTTTCTCTGTCCACCAGCTCTGCAGACAGTctttacagaagctgtggctacatGACAGAAGAACAGGATCTCTAAAGACATCATGACAAACCGGACAGCAGAGATCCTCCTCTGATCTGGAAGCC

Function

NR:

description
PREDICTED: cAMP-specific 3',5'-cyclic phosphodiesterase 4B isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU60379 False 335 lncRNA 0.48 2 41487332 41493634
TU60381 True 1951 lncRNA 0.43 2 41491672 41501091

Neighbor

gene id symbol gene type direction distance location
LOC120557132 NA coding upstream 74711 41406543 ~ 41412621 (+)
LOC120556884 NA coding upstream 122318 41362503 ~ 41365014 (+)
LOC120557130 NA coding upstream 126978 41358141 ~ 41360354 (+)
LOC120557311 NA coding upstream 497412 40961708 ~ 40989920 (+)
LOC120557310 NA coding upstream 573078 40872849 ~ 40914254 (+)
LOC120556749 NA coding downstream 124116 41625207 ~ 41628189 (+)
LOC120557138 NA coding downstream 238234 41739325 ~ 41743157 (+)
LOC120556746 LOC106676760 coding downstream 457202 41958293 ~ 41961170 (+)
LOC120556737 NA coding downstream 462273 41963364 ~ 41987577 (+)
LOC120556739 NA coding downstream 490316 41991407 ~ 41998401 (+)
G45095 smpd4 non-coding upstream 100269 41381222 ~ 41387063 (+)
G44758 NA non-coding upstream 181212 41305908 ~ 41306120 (+)
G44757 NA non-coding upstream 181551 41304778 ~ 41305781 (+)
G44751 NA non-coding upstream 410200 41045844 ~ 41077132 (+)
G44633 NA non-coding upstream 461990 40949921 ~ 41025342 (+)
G45174 NA non-coding downstream 201543 41702634 ~ 41703077 (+)
G45193 NA non-coding downstream 354569 41855660 ~ 41858286 (+)
G45190 NA non-coding downstream 411073 41912164 ~ 41915303 (+)
LOC120556755 NA non-coding downstream 438123 41939214 ~ 41957098 (+)
G45229 NA non-coding downstream 666786 42167877 ~ 42170069 (+)
LOC120557312 NA other upstream 555949 40848815 ~ 40931383 (+)
LOC120557687 NA other upstream 818590 40666199 ~ 40668742 (+)
LOC120557674 NA other upstream 939484 40519942 ~ 40547848 (+)
G44690 NA other upstream 980762 40480676 ~ 40506570 (+)
LOC120557139 LOC106956008,LOC103153866,LOC103464266,LOC108411580,LOC102236494 other downstream 249912 41751003 ~ 41768313 (+)
G45186 NA other downstream 368639 41869730 ~ 41880367 (+)
dynlrb1 dynlrb1,LOC106565026 other downstream 395904 41896995 ~ 41902631 (+)
map1lc3a map1lc3a,LOC107551126 other downstream 404438 41905529 ~ 41912117 (+)
G45237 NA other downstream 777194 42278285 ~ 42301895 (+)

Expression


Co-expression Network