LOC120557139 (LOC106956008,LOC103153866,LOC103464266,LOC108411580,LOC102236494)


Basic Information

Item Value
gene id LOC120557139
gene name LOC106956008,LOC103153866,LOC103464266,LOC108411580,LOC102236494
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 41751003 ~ 41768313 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU60455
CATCTTCTCTCTcacccctgtttttttttatcctgccctcactgtttttttcccatttctCGCCCTCCAGCTCTGCAATGTGAAAGAGACGCCCCAGCACACGGAGGAAGAAGTCGGGGCCTTCACCAAACTCATTGAGGCCATGGGCTTCACCGGACCTCTCAAATACAACAAATGGAAAATCAAGATTGCTGCCTTGCGCATGTACACATGCTGCGTGGAGAGAGTCAATTATGACGAGTTCTTTGACAaGTGCTCCCTCCCTGACACACTCAACTCTTGGTTCTTGGTAGCACAGCTACATGTGTGGATGTGTTTGGTGCGGATGCGTCAGGAGGGCCGAGAAGGGAAGTACATGTGTCGTTACATCGTCCACTCCATGTGGGAGGATGTGGAGCAGAGGAGCAAAATTATGgggATTGATGCCAgccataggaaggaaggaatgaaagCCATGACGGAGACGCGTTTTGCCGTAGCGATATTTGGATACGGTAGGggaatCCTGTCTGACGACTGCGTGCTGGCAGCAGCTCTGTGGAGAAACCTGTTCAATTGCCAGTGTGATGACCCCAAACAGCTGGAGCTCATGGTGGAATACGTACGCAAACAGATGCAGTTCATCGACGCCCTGGACGGGAAGGACCTGATGCTGACCGGCGAGGTCAAGTTGCGCCC
>TU60456
gtgtgtttttttttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtgtgtgtgtgtgtggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtagggaatCCTGTCTGACGACTGCGTGCTGGCAGCAGCTCTGTGGAGAAACCTGTTCAATTGCCAGTGTGATGACCCCAAACAGCTGGAGCTCATGGTGGAATACGTACGCAAACAGATGCAGTTCATCGACGCCCTGGACGGGAAGGACCTGATGCTGACCGGCGAGGTCAAGTTGCGCCC
>XM_039797172.1
ttttcccatttctCGCCCTCCAGCTCTGCAATGTGAAAGAGACGCCCCAGCACACGGAGGAAGAAGTCGGGGCCTTCACCAAACTCATTGAGGCCATGGGCTTCACCGGACCTCTCAAATACAACAAATGGAAAATCAAGATTGCTGCCTTGCGCATGTACACATGCTGCGTGGAGAGAGTCAATTATGACGAGTTCTTTGACAaGTGCTCCCTCCCTGACACACTCAACTCTTGGTTCTTGGTAGCACAGCTACATGTGTGGATGTGTTTGGTGCGGATGCGTCAGGAGGGCCGAGAAGGGAAGTACATGTGTCGTTACATCGTCCACTCCATGTGGGAGGATGTGGAGCAGAGGAGCAAAATTATGgggATTGATGCCAgccataggaaggaaggaatgaaagCCATGACGGAGACGCGTTTTGCCGTAGCGATATTTGGATACGGTAGGggaatCCTGTCTGACGACTGCGTGCTGGCAGCAGCTCTGTGGAGAAACCTGTTCAATTGCCAGTGTGATGACCCCAAACAGCTGGAGCTCATGGTGGAATACGTACGCAAACAGATGCAGTTCATCGACGCCCTGGACGGGAAGGACCTGATGCTGACCGGCGAGGTCAAGTTGCGCCCGGTGGAGGAGAACGCGCAGAGCATCCTGAAGGTGGCGACGCCACAACGACAACCGTTTGAGATCAGTGTTCCACCACCTTCATTTGAATGA

Function

NR:

description
PREDICTED: ubiquinol-cytochrome-c reductase complex assembly factor 1

GO: NA

KEGG:

id description
K17662 CBP3, UQCC; cytochrome b pre-mRNA-processing protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
TU60455 False 678 TUCP 0.52 7 41751003 41763651
TU60456 False 355 lncRNA 0.53 3 41758703 41763651
XM_039797172.1 True 722 mRNA 0.53 9 41751050 41768313

Neighbor

gene id symbol gene type direction distance location
LOC120557138 NA coding upstream 7846 41739325 ~ 41743157 (+)
LOC120556749 NA coding upstream 122814 41625207 ~ 41628189 (+)
LOC120557132 NA coding upstream 338382 41406543 ~ 41412621 (+)
LOC120556884 NA coding upstream 385989 41362503 ~ 41365014 (+)
LOC120557130 NA coding upstream 390649 41358141 ~ 41360354 (+)
LOC120556746 LOC106676760 coding downstream 189980 41958293 ~ 41961170 (+)
LOC120556737 NA coding downstream 195051 41963364 ~ 41987577 (+)
LOC120556739 NA coding downstream 223094 41991407 ~ 41998401 (+)
LOC120556738 LOC106676760 coding downstream 240139 42008452 ~ 42012332 (+)
LOC120556744 NA coding downstream 244635 42012948 ~ 42014554 (+)
G45174 NA non-coding upstream 47926 41702634 ~ 41703077 (+)
G45119 LOC106676758 non-coding upstream 249912 41487332 ~ 41501091 (+)
G45095 smpd4 non-coding upstream 363940 41381222 ~ 41387063 (+)
G44758 NA non-coding upstream 444883 41305908 ~ 41306120 (+)
G44757 NA non-coding upstream 445222 41304778 ~ 41305781 (+)
G45193 NA non-coding downstream 87347 41855660 ~ 41858286 (+)
G45190 NA non-coding downstream 143851 41912164 ~ 41915303 (+)
LOC120556755 NA non-coding downstream 170901 41939214 ~ 41957098 (+)
G45229 NA non-coding downstream 399564 42167877 ~ 42170069 (+)
G45245 NA non-coding downstream 580941 42349254 ~ 42350755 (+)
LOC120557312 NA other upstream 819620 40848815 ~ 40931383 (+)
LOC120557687 NA other upstream 1082261 40666199 ~ 40668742 (+)
LOC120557674 NA other upstream 1203155 40519942 ~ 40547848 (+)
G44690 NA other upstream 1244433 40480676 ~ 40506570 (+)
LOC120557692 NA other upstream 1244947 40504194 ~ 40506056 (+)
G45186 NA other downstream 101417 41869730 ~ 41880367 (+)
dynlrb1 dynlrb1,LOC106565026 other downstream 128682 41896995 ~ 41902631 (+)
map1lc3a map1lc3a,LOC107551126 other downstream 137216 41905529 ~ 41912117 (+)
G45237 NA other downstream 509972 42278285 ~ 42301895 (+)
rbm15b rbm15b,LOC102788268 other downstream 886475 42654788 ~ 42658388 (+)

Expression


Co-expression Network