map1lc3a (map1lc3a,LOC107551126)


Basic Information

Item Value
gene id map1lc3a
gene name map1lc3a,LOC107551126
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 41905529 ~ 41912117 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU60467
CGCGGAGCTGTTTGGCTTCAGACTGAAAAACCAGAGGCGGCCGAAGACGTTCAAACAGACAAAACCCCTTCCAGTTTCTTTGTCACCGAGTCGCGTTGTTACGCAGTTATACTGCACATTCATTAGGttgtaactgtgtaataactCTGACAGAGATGCCGTCCGACAGACCCTTCAAACAAAGGAGGACATTTGCCGACCGGTGCAAAGAGGTCCAGCAGATCCGCGATCAGCACCCCAACAAGATCCCCGTGATCATCGAGAGATATAAGGGAGAAAAGCAGCTGCCTGTTCTGGACAAAACCAAGTTCCTGGTTCCTGACCACGTCAACATGAGCGAGCTGGTCAAGATCATCAgGCGTCGGCTGCAGCTGAACCCGACGCAGGCCTTCTTCCTGCTGGTCAACCAGCACAGCATGGTGTCCGTGTCCACGCCCATCTCTGAGATCTACGAGCAGGAGAGGGACGAGGACGGCTTCCTCTACATGGTCTACGCCTCGCAGGAGACCTTCGGCTG
>TU60468
CGGAGAAGTTGAATGGTGAACGTCCCCTTTAAATCCAGCGGATGACGTCAGCGCCTCGGTTTACTTGCTTTGTTTGTCCGCGGAGCTGTTTGGCTTCAGACTGAAAAACCAGAGGCGGCCGAAGACGTTCAAACAGACAAAACCCCTTCCAGTTTCTTTGTCACCGAGTCGCGTTGTTACGCAGTTATACTGCACATTCATTAGGttgtaactgtgtaataactCTGACAGAGATGCCGTCCGACAGACCCTTCAAACAAAGGAGGACATTTGCCGACCGGTGCAAAGAGGTCCAGCAGATCCGCGATCAGCACCCCAACAAGATCCCCGTGATCATCGAGAGATATAAGGGAGAAAAGCAGCTGCCTGTTCTGGACAAAACCAAGTTCCTGGTTCCTGACCACGTCAACATGAGCGAGCTGGTCAAGATCATCAgGCGTCGGCTGCAGCTGAACCCGACGCAGGCCTTCTTCCTGCTGGTCAACCAGCACAGCATGGTGTCCGTGTCCACGCCCATCTCTGAGATCTACGAGCAGGAGAGGGACGAGGACGGCTTCCTCTACATGGTCTACGCCTCGCAGGAGACCTTCGGCTG
>XM_039796471.1
TTGTTTGTCCGCGGAGCTGTTTGGCTTCAGACTGAAAAACCAGAGGCGGCCGAAGACGTTCAAACAGACAAAACCCCTTCCAGTTTCTTTGTCACCGAGTCGCGTTGTTACGCAGTTATACTGCACATTCATTAGGttgtaactgtgtaataactCTGACAGAGATGCCGTCCGACAGACCCTTCAAACAAAGGAGGACATTTGCCGACCGGTGCAAAGAGGTCCAGCAGATCCGCGATCAGCACCCCAACAAGATCCCCGTGATCATCGAGAGATATAAGGGAGAAAAGCAGCTGCCTGTTCTGGACAAAACCAAGTTCCTGGTTCCTGACCACGTCAACATGAGCGAGCTGGTCAAGATCATCAgGCGTCGGCTGCAGCTGAACCCGACGCAGGCCTTCTTCCTGCTGGTCAACCAGCACAGCATGGTGTCCGTGTCCACGCCCATCTCTGAGATCTACGAGCAGGAGAGGGACGAGGACGGCTTCCTCTACATGGTCTACGCCTCGCAGGAGACCTTCGGCTGctaggggggggggtggggggagtggGGACAT

Function

symbol description
map1lc3a Predicted to enable microtubule binding activity; phosphatidylethanolamine binding activity; and ubiquitin protein ligase binding activity. Predicted to be involved in autophagy of mitochondrion; cellular response to nitrogen starvation; and macroautophagy. Predicted to act upstream of or within autophagy. Predicted to be located in membrane. Predicted to be active in autophagosome membrane and cytosol. Is expressed in forerunner cell group; nervous system; neural tube; and tail bud. Human ortholog(s) of this gene implicated in glioblastoma. Orthologous to human MAP1LC3A (microtubule associated protein 1 light chain 3 alpha).

NR:

description
microtubule-associated proteins 1A/1B light chain 3A

GO:

id name namespace
GO:0006914 autophagy biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU60467 False 517 TUCP 0.54 4 41905607 41912086
TU60468 True 595 TUCP 0.53 4 41905529 41912086
XM_039796471.1 False 557 mRNA 0.55 4 41905598 41912117

Neighbor

gene id symbol gene type direction distance location
LOC120557138 NA coding upstream 162372 41739325 ~ 41743157 (+)
LOC120556749 NA coding upstream 277340 41625207 ~ 41628189 (+)
LOC120557132 NA coding upstream 492908 41406543 ~ 41412621 (+)
LOC120556884 NA coding upstream 540515 41362503 ~ 41365014 (+)
LOC120557130 NA coding upstream 545175 41358141 ~ 41360354 (+)
LOC120556746 LOC106676760 coding downstream 46176 41958293 ~ 41961170 (+)
LOC120556737 NA coding downstream 51247 41963364 ~ 41987577 (+)
LOC120556739 NA coding downstream 79290 41991407 ~ 41998401 (+)
LOC120556738 LOC106676760 coding downstream 96335 42008452 ~ 42012332 (+)
LOC120556744 NA coding downstream 100831 42012948 ~ 42014554 (+)
G45193 NA non-coding upstream 47243 41855660 ~ 41858286 (+)
G45174 NA non-coding upstream 202452 41702634 ~ 41703077 (+)
G45119 LOC106676758 non-coding upstream 404438 41487332 ~ 41501091 (+)
G45095 smpd4 non-coding upstream 518466 41381222 ~ 41387063 (+)
G44758 NA non-coding upstream 599409 41305908 ~ 41306120 (+)
G45190 NA non-coding downstream 47 41912164 ~ 41915303 (+)
LOC120556755 NA non-coding downstream 27097 41939214 ~ 41957098 (+)
G45229 NA non-coding downstream 255760 42167877 ~ 42170069 (+)
G45245 NA non-coding downstream 437137 42349254 ~ 42350755 (+)
G45247 NA non-coding downstream 500088 42412205 ~ 42412427 (+)
dynlrb1 dynlrb1,LOC106565026 other upstream 2898 41896995 ~ 41902631 (+)
G45186 NA other upstream 25162 41869730 ~ 41880367 (+)
LOC120557139 LOC106956008,LOC103153866,LOC103464266,LOC108411580,LOC102236494 other upstream 137216 41751003 ~ 41768313 (+)
LOC120557312 NA other upstream 974146 40848815 ~ 40931383 (+)
LOC120557687 NA other upstream 1236787 40666199 ~ 40668742 (+)
G45237 NA other downstream 366168 42278285 ~ 42301895 (+)
rbm15b rbm15b,LOC102788268 other downstream 742671 42654788 ~ 42658388 (+)
G45557 NA other downstream 1926267 43838384 ~ 43838852 (+)
G45577 NA other downstream 2044710 43956827 ~ 43957173 (+)
G45635 NA other downstream 2448669 44360786 ~ 44468991 (+)

Expression


Co-expression Network