LOC120556755


Basic Information

Item Value
gene id LOC120556755
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 41939214 ~ 41957098 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU60491
TCAGCCGCTCCACCGACACGTCTGCTGGGATACTCTGCCTGGAAACACCGCAAACTAATCGGAACCGGCGGCCGACAGAGACGGACGGGTCTCGTAGGATACGAGGGGGTCGATTAGGTGTGACAGTGATGATGGGAGGAGAGCAGAGCCATGAAAGAGAGgctgaggagagagaaaaagagactgaaAAACATCAAGAGTCTGCCAATACTGACAGCTCCggatctgctgctgctgaagAAACCCCAGGAGAGCTGCCCCAGTGCCAGATGGGAAACAGGAAGGTGGACAACATGTGCTTCATGATCTCGTGCACCAACTGGTACTAAAGGGATCCTCGTACAACAGGTTGATGAAACAGAAGATGTTGATGGGACGTCTTGGCCAGACGCTGCATTCATGGAGCCAACGAAAATCCAAAACCAGGCTGTCACTGAAGTCCCATGTGATCAGCGCATTGTTTCGCCATTTTATAGGTCAAAACAAACAGCATATAACATATGTTAGAGGTGGTTGTTGGTAGATTTTGATCACATTAGGTCAGAGTCAGGATAGCTGTGTTCCCCGGTTTTcactctttatgctaagctaagctgacTCGATGCTGGCGGTGGCAtcatatttaccgtacagacGAGACTGTAATGAAACTTCTCAtgtaactcttggcaagaaagcaaataagtgcaTAAGTTCAGCCAAATCAATCATTTTCACAGCAATGACTTAAATAAAGAcgtttgatttttatttattttttattatttgtgtcTCATTACTTTTAAGATAGGATAAGTTACATCTTTATTGATCCCTAGCGGGGACATTTGGTTGTTGCTGCAgtacaacagcaacaacagagaTAAAGACAGATACCTGCATACTGCATTAGTATTTATTGGCTCCAGTTCGATCGGCAGTGATGGAAACAGGACAACCCAGGTAGATAAGCAATTTTTCGGCCCTTTTCTGGCACGCTGCTGTGGCTGTGTCGGTAGGGTCTATCATCACTGCCACAAACTCCGCCCATCTTCGACTAAAACATCAAATTAGTCCGCACGAGTTTGACAGAGGGACTGAATACGTaacagatatttaaaaaacaataaagtaacCACCGTAACATTTTCACTGGCCTCCATGCTGGTTTTCTGTTTACAAAGAGTAGCGTATAATAGTAGGCAGTATGGTAGGGAGCGGGGAAGAAAGGCAGCGGCCTGTGGCGGAAAGTTgagaccgactcaacttttAGAGAAACACAACCAGACGTCACCCTGCGGCGGCCAATCATGTGCGTGTGgatcagacttgtcagtgtGTTTTGAGGCAGTGTGAGTGccgtacaggaaacagaaaacatcactgcctctattgcTGCCACAAGAAGGTTTTAAATCACTATGagagtaaaaaatgaaaaagcaagCACTGGtagtttgtgtaacagctgactgtttcctcaGTCCCTCGGTCTCTTTTCTGGCTCTCTTTCTCGGTGAAATGGAGCGGTCTTCAACTGCAGTCAGAAATCTCAAGGTCTATAAACGATCCGACGGAAACAGtaattatgaaaaataaagtctacttgtgccaCACtagggggttaaagaacacaacaggacgtcacacaaatgggaCGATTAATCGCTGGATTGCTTTTTCTGGTCTGATTGTGTCCCAGAGACACGTAATGCAGTTGGGGGGTGGAGGTTGTGATGTTAGTCTATTTCATCCattgacatgttgacggacccaATAGTAaagcagatttcggtgcctaaTTTCGGTTCTACTGAAATGCCAGCACTgccctctgatgctccgaaacggacgttagaggcaacagaagtgTGAATGGAAGCAGAGATGGTGCATTGGGACACACGCACACTGTCGAGCGAGGGGGGATTTTGATTGAAAGCCTTTCTTGTCCAATATTGTTCCAATTTTATCGATattgttaatgttttaattattttgacttGTGTGTGTTGAGCCGTGTAGACCAGCAAACTCTTTGTAGAAGCTGATTTGATAAAGAAAAGTTATTCAAAAACTGCATGTTTAAGCAGCCAATCAGTGTTGAGATCAAGAAATGTTAAACTA
>XR_005638887.1
ATTATCTCTTTTATAAACGATCTTTGGAGTCAGCCGCTCCACCGACACGTCTGCTGGGATACTCTGCCTGGAAACACCGCAAACTAATCGGAACCGGCGGCCGACAGAGACGGACGGGTCTCGTAGGATACGAGGGGGTCGATTAGGTGTGACAGTGATGATGGGAGGAGAGCAGAGCCATGAAAGAGAGgctgaggagagagaaaaagagactgaaAAACATCAAGAGTCTGCCAATACTGACAGCTCCggatctgctgctgctgaagAAACCCCAGGAGAGCTGCCCCAGTGCCAGATGGGAAACAGGAAGGTGGACAACATGTGCTTCATGATCTCGTGCACCAACTGGTACTAAAGGGATCCTCGTACAACAGGTTGATGAAACAGAAGATGTTGATGGGACGTCTTGGCCAGACGCTGCATTCATGGAGCCAACGAAAATCCAAAACCAGGCTGTCACTGAAGTCCCATGTGATCAGCGCATTGTTTCGCCATTTTATAGGTCAAAACAAACAGCATATAACATATGTTAGAGGTGGTTGTTGGTAGATTTTGATCACATTAGGTCAGAGTCAGGATAGCTGTGTTCCCCGGTTTTcactctttatgctaagctaagctgacTCGATGCTGGCGGTGGCAtcatatttaccgtacagacGAGACTGTAATGAAACTTCTCAtgtaactcttggcaagaaagcaaataagtgcaTAAGTTCAGCCAAATCAATCATTTTCACAGCAATGACTTAAATAAAGAcgtttgatttttattta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU60491 True 2106 lncRNA 0.45 4 41939243 41957098
XR_005638887.1 False 783 lncRNA 0.46 3 41939214 41955671

Neighbor

gene id symbol gene type direction distance location
LOC120557138 NA coding upstream 196057 41739325 ~ 41743157 (+)
LOC120556749 NA coding upstream 311025 41625207 ~ 41628189 (+)
LOC120557132 NA coding upstream 526593 41406543 ~ 41412621 (+)
LOC120556884 NA coding upstream 574200 41362503 ~ 41365014 (+)
LOC120557130 NA coding upstream 578860 41358141 ~ 41360354 (+)
LOC120556746 LOC106676760 coding downstream 1195 41958293 ~ 41961170 (+)
LOC120556737 NA coding downstream 6266 41963364 ~ 41987577 (+)
LOC120556739 NA coding downstream 34309 41991407 ~ 41998401 (+)
LOC120556738 LOC106676760 coding downstream 51354 42008452 ~ 42012332 (+)
LOC120556744 NA coding downstream 55850 42012948 ~ 42014554 (+)
G45190 NA non-coding upstream 23911 41912164 ~ 41915303 (+)
G45193 NA non-coding upstream 80928 41855660 ~ 41858286 (+)
G45174 NA non-coding upstream 236137 41702634 ~ 41703077 (+)
G45119 LOC106676758 non-coding upstream 438123 41487332 ~ 41501091 (+)
G45095 smpd4 non-coding upstream 552151 41381222 ~ 41387063 (+)
G45229 NA non-coding downstream 210779 42167877 ~ 42170069 (+)
G45245 NA non-coding downstream 392156 42349254 ~ 42350755 (+)
G45247 NA non-coding downstream 455107 42412205 ~ 42412427 (+)
G45248 NA non-coding downstream 464510 42421608 ~ 42429476 (+)
G45253 NA non-coding downstream 511137 42468235 ~ 42479826 (+)
map1lc3a map1lc3a,LOC107551126 other upstream 27097 41905529 ~ 41912117 (+)
dynlrb1 dynlrb1,LOC106565026 other upstream 36583 41896995 ~ 41902631 (+)
G45186 NA other upstream 58847 41869730 ~ 41880367 (+)
LOC120557139 LOC106956008,LOC103153866,LOC103464266,LOC108411580,LOC102236494 other upstream 170901 41751003 ~ 41768313 (+)
LOC120557312 NA other upstream 1007831 40848815 ~ 40931383 (+)
G45237 NA other downstream 321187 42278285 ~ 42301895 (+)
rbm15b rbm15b,LOC102788268 other downstream 697690 42654788 ~ 42658388 (+)
G45557 NA other downstream 1881286 43838384 ~ 43838852 (+)
G45577 NA other downstream 1999729 43956827 ~ 43957173 (+)
G45635 NA other downstream 2403688 44360786 ~ 44468991 (+)

Expression


Co-expression Network