si:dkey-183j2.10 (LOC104951540,LOC103362943)


Basic Information

Item Value
gene id si:dkey-183j2.10
gene name LOC104951540,LOC103362943
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 20218566 ~ 20224017 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039796281.1
CAAAAACTTCGCTAGCTGTCTTAAGACATTTGAATCTGAAAAACTTCAGCTCACGCTGCATCACAGTCGAGCTCACTAGGgtctgtctgaaagtgtgacgTGCCAATCCAGCAGCCACATCTTGGTCTCTTGTCAGGATGCAAATCAGGATAATCAGGATGCTGTTTGGCTTTTTTGTATTGTCTGTTGGGGTTTTCCTGAACATTGGAGTGTGCACTGCAGCATCAGTGCAATCAGAGATGAGAATCACAACAATAAAGCAAGAACCATATGCAATGTCCAAAGGCGCACAACTGGAAGGCTTTTGCATGGACCTGCTGTCTGAAGTAGCCAAGAAACTGGGCTTCAATTACAAAGTGCAGCTGGTGAAAGATGCTTCATATGGCAGACAGGATGAGAACGGGAACTGGAATGGGATGATTGGAGAGGTGGTGAGAGGGGAGGCCGACCTTGCGATTGCTCCGCTGACTCTCACTGCAGCTCGGGAGAAAGTGGTGGGGATGACCAAACCATTCATGCAGACAGGAATCAGCATCCTGCTGAGGAAGGACATCTCAGAGGGAACAGGCTTCTTTGAATTCCTTTCCCCCTTTACAGCCGAGACCTGGGTCGGCATACTCATTGCCTATCTGGGGACCGCTGCATGCATCTTTGTAGTTGCCAGACTCAGCCCATGTGAGTGGAGTCAGACCCAGAGTGAGCAGAACAGATTCAGCCTCCTCCACAGTCTGTGGTACACAGCTGGAGCTCTGACTCTACAAGGTGCTGGCCCACACCCCAAAGCTCTTTCAGGACGTGTCATCTGCTGCAGCTGGTGGTTATTTACCATCGTCCTCCTAGCTTGTTATTTCTCCAACCTCAGCTCCTCTAAGACCTCCGAGTCCACTCACCTGACAGTGAAAGGGTTTGAGGACTTAGCCAATCAGGACACGATTGAGTACGGCTGCTTGGCTGGCTCTTCCACCCTTGCCTTCTTCAAGAATTCAAACAATCCAGTGTACCGCAGGATCTATGAACACATGGAGAGAACTAAGAGTTTTGTGTCATCTATGGACGAAGGGGTCCAGCGTGCAAAAGAGGGAAACTTTGCCTTCATTGGAGAGTCTGTTTCTTTGGACTTGGCAGTAGCACGGCATTGTGAGCTGGTCAGAGCACATGAAGTCATTGGAATGAGGGGATACAGCATTGCTGCTAGCCTTGGTTCACCCATCATAAAGAACCTCAGCGTGGCGATCCTACAGCTGAGCGAGGCAGGGGAGCTGGCTTACCTGCGAAGCAAGTGGTGGGCCAGCAGCTGCGTAGCAGACAAGGCCAAGTCTTCAGCTGTGCATCAGCACAGCCTAAAGGGGATGTTTCTGGTTCTTTCCCTTGGCCTGGGGCTGGGAGCACTGCTGGCTGTCCTGGAGCTCACCTCCAAAAGCCGCAGAAGAGCAGCTGAGCAGAAGAAATCCTGTTGCACTGTCCTGACTGAGGAACTGAGTCTGCGCTTGAGGACCAGCAATGCAAACAAACCCCAAGAAAATGTAGACAAAGATAAAGAAAAAGCATAGAAACATCCTACAAATGTGTAGTTTTAACACGTCTGAACATTTTAATTTAGAATTATTTTGGTTTGATAGCTGTTTGATAGAATTTGTTGTAATATTTGACAGAAACATTAACTTAATTGTAGGTTTTGAACTTTCTTACTTGTAGAGATACATCAGAAAAGAAACGGtattacatttcaaaataaaaaagctcgcattttattaaaataatcaattaattgattttcAAGTACGTACGCTacaaattcaatgaaaaagcAAACATAGTTTaagtattataaaaaataattattaaaatggCAACAAACTAACAAATAGCGCTCatgtacttgttttttttttgtttactgttaCTTCTTTCTGACTGCATCACACTGTTTTGTACAGTTGGCAATGGCATCACATGATTTCAACAAAAACTATTTCATGCATAAAAACTGTGTTGTTTGTAAACATAACAGCAGgtctataataataaaaactgtctaattgtg

Function

NR:

description
glutamate receptor U1-like

GO:

id name namespace
GO:0035235 ionotropic glutamate receptor signaling pathway biological_process
GO:0034220 ion transmembrane transport biological_process
GO:0045211 postsynaptic membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005234 extracellularly glutamate-gated ion channel activity molecular_function
GO:0004970 ionotropic glutamate receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039796281.1 True 2044 mRNA 0.45 10 20218566 20224017

Neighbor

gene id symbol gene type direction distance location
mon1bb NA coding upstream 14713 20197989 ~ 20203853 (+)
glyctk glyctk coding upstream 22817 20187655 ~ 20195749 (+)
hemk1 hemk1 coding upstream 50775 20161369 ~ 20167791 (+)
si:ch211-161c3.5 calml6,c5h3orf18,clg5h3orf18,LOC104956351 coding upstream 329834 19877422 ~ 19888732 (+)
rbp7b rbp7,LOC104956357,LOC103362661 coding upstream 367037 19849826 ~ 19851529 (+)
ppcs ppcs coding downstream 277612 20501629 ~ 20504671 (+)
si:dkey-264d12.5 NA coding downstream 300210 20524227 ~ 20546846 (+)
LOC120556874 NA coding downstream 366992 20591009 ~ 20603889 (+)
si:ch73-130a3.4 NA coding downstream 439309 20663326 ~ 20670676 (+)
mmel1 mmel1,LOC102790517 coding downstream 456971 20680988 ~ 20700924 (+)
G40357 NA non-coding upstream 61041 20156854 ~ 20157525 (+)
G40352 NA non-coding upstream 71583 20146735 ~ 20146983 (+)
G40339 NA non-coding upstream 96696 20068278 ~ 20121870 (+)
G40284 NA non-coding upstream 456068 19761173 ~ 19762498 (+)
G40182 NA non-coding upstream 843727 19374630 ~ 19374839 (+)
G40433 NA non-coding downstream 3320 20227337 ~ 20227816 (+)
G40442 NA non-coding downstream 41823 20265840 ~ 20266366 (+)
G40479 NA non-coding downstream 195123 20419140 ~ 20423496 (+)
G40488 NA non-coding downstream 267977 20491994 ~ 20531354 (+)
G40592 NA non-coding downstream 499205 20723222 ~ 20725950 (+)
G40353 rassf1,LOC102778369 other upstream 69876 20148104 ~ 20148690 (+)
abhd14b abhd14b other upstream 295017 19917889 ~ 19923549 (+)
cenps LOC103362653,LOC103137101,LOC103464519 other upstream 359225 19851548 ~ 19859341 (+)
sema3fa LOC103360486,LOC102793610,LOC100701195,LOC102213718,LOC102288772,LOC101468868 other upstream 477177 19687671 ~ 19741389 (+)
LOC120557344 LOC104966310 other upstream 586047 19617181 ~ 19632519 (+)
vgll4b vgll4 other downstream 1071085 21295102 ~ 21343711 (+)
itga7 itga7 other downstream 1726359 21950376 ~ 21992611 (+)
cbfa2t2 cbfa2t2 other downstream 3510931 23734948 ~ 23771932 (+)
znfx1 NA other downstream 3624030 23848047 ~ 23867512 (+)
bloc1s1 bloc1s1,LOC102796612 other downstream 4331508 24555525 ~ 24560318 (+)

Expression


Co-expression Network