nicn1 (nicn1,LOC103371623)


Basic Information

Item Value
gene id nicn1
gene name nicn1,LOC103371623
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 43568609 ~ 43579005 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039796385.1
CTCACTGTCGCCTTGGTTACAGGCAGACCTAACAGTGTCTTTAGCATGTCAACATCTGCGACTTGAAGCGTTTCAGTCTTCCTATTCTTTCTGTCGTCGACTTTTACAAACTGTAGCTCCTCTCTGACAAAGCAAGAAGATGAGCGGGAGCGGTGACGACATCCAGCCTGTGAGCTGCACCATCAAACCTCCGGTCTACCTGCACATCGGAGACACCAAAGCAGACGCAGCTCGCTccggtgtttgtgttgtagaCGTCACCCTGCCCTTTGGAAAGCCTGTCAACattgAGGAAATCACCTTTAAGAACTACTACACGGCGTATGTGACGGTGCGTTTGCTGAGGAAGAGTTTGGGGCCGGAGGCCAACGCTAAGTGGTGCACTGCTCTGAGAGACCTGCCGCTGATGGACAACCCCCACACAGAGGGGGGGTCCCAGGACTACTGCTCCATCCACAGGACACAGatgcagGTGGAGGCGGATCATGTGTTGTCTGTGAGACTGATCCTGAGACAGCCGTCGTCCGCCTGGCTCACCTTCGGCCTCGAACACATCCAAATATTCCCTCACACGGAGCCGGACCCAGAGAAGGaggtttctgattggctgtctgatCTGACGCTGGTCGACCAACACCCTGACCTGGAGGGCCTCCCGGACCCCCAGACGGTTTCATCCAGCATCCAGCAGATGTGGGCTCTGACTGAGGTGATGCAGACCAACCAGACTACAGCCTCCATCGGACGGTTTGACGTGGATGGATGCTACGACATCAACCTGCTCTCCCTGACGTAACCTGGCCGCTGACTCCTTACTCTACATGTACATAAAGCTCACTTTATGGAAGATATAATGACAGGAAACTATTCAAACGTATATTTCCTGCTTAAGAGCCATAGACCCAATCCCAATGTTTGTTCACAATAACTTCCGGGTAGAAAACTCCTGCGTCCCGTACAAACAATTTAACACTCCTGTTGTTCTTCGGTCAAATTTGATCCATTTTCAAaacgtttctatatcagaaatttcgGTTTCTTataaccaaattgtcaaaagaaataatgtggatggttccaCACAaccaacgctcttcacaagttgaataa
>XM_039796388.1
CTCACTGTCGCCTTGGTTACAGGCAGACCTAACAGTGTCTTTAGCATGTCAACATCTGCGACTTGAAGCGTTTCAGTCTTCCTATTCTTTCTGTCGTCGACTTTTACAAACTGTAGCTCCTCTCTGACAAAGCAAGATGAGCGGGAGCGGTGACGACATCCAGCCTGTGAGCTGCACCATCAAACCTCCGGTCTACCTGCACATCGGAGACACCAAAGCAGACGCAGCTCGCTccggtgtttgtgttgtagaCGTCACCCTGCCCTTTGGAAAGCCTGTCAACattgAGGAAATCACCTTTAAGAACTACTACACGGCGTATGTGACGGTGCGTTTGCTGAGGAAGAGTTTGGGGCCGGAGGCCAACGCTAAGTGGTGCACTGCTCTGAGAGACCTGCCGCTGATGGACAACCCCCACACAGAGGGGGGGTCCCAGGACTACTGCTCCATCCACAGGACACAGatgcagGTGGAGGCGGATCATGTGTTGTCTGTGAGACTGATCCTGAGACAGCCGTCGTCCGCCTGGCTCACCTTCGGCCTCGAACACATCCAAATATTCCCTCACACGGAGCCGGACCCAGAGAAGGaggtttctgattggctgtctgatCTGACGCTGGTCGACCAACACCCTGACCTGGAGGGCCTCCCGGACCCCCAGACGGTTTCATCCAGCATCCAGCAGATGTGGGCTCTGACTGAGGTGATGCAGACCAACCAGACTACAGCCTCCATCGGACGGTTTGACGTGGATGGATGCTACGACATCAACCTGCTCTCCCTGACGTAACCTGGCCGCTGACTCCTTACTCTACATGTACATAAAGCTCACTTTATGGAAGATATAATGACAGGAAACTATTCAAACGTATATTTCCTGCTTAAGAGCCATAGACCCAATCCCAATGTTTGTTCACAATAACTTCCGGGTAGAAAACTCCTGCGTCCCGTACAAACAATTTAACACTCCTGTTGTTCTTCGGTCAAATTTGATCCATTTTCAAaacgtttctatatcagaaatttcgGTTTCTTataaccaaattgtcaaaagaaataatgtggatggttccaCACAaccaacgctcttcacaagttgaataa

Function

symbol description
nicn1 Predicted to be active in nucleoplasm. Orthologous to human NICN1 (nicolin 1).

NR:

description
nicolin-1

GO: NA

KEGG:

id description
K16607 NICN1; nicolin-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039796385.1 True 1110 mRNA 0.50 7 43568609 43579005
XM_039796388.1 False 1107 mRNA 0.50 7 43568609 43579005

Neighbor

gene id symbol gene type direction distance location
LOC120558241 NA coding upstream 58150 43510346 ~ 43510459 (+)
LOC120557146 NA coding upstream 126085 43412120 ~ 43442524 (+)
manf manf,LOC102787989 coding upstream 917278 42645340 ~ 42651331 (+)
LOC120557750 NA coding upstream 937673 42617221 ~ 42630936 (+)
LOC120557144 NA coding upstream 953027 42602515 ~ 42615582 (+)
LOC120558025 LOC102289652,LOC101467503,LOC103368898 coding downstream 316629 43895634 ~ 44107691 (+)
amigo3 NA coding downstream 637408 44216413 ~ 44220156 (+)
LOC120557212 NA coding downstream 771402 44350407 ~ 44352218 (+)
LOC120557215 mkrn2os coding downstream 903820 44482825 ~ 44486761 (+)
LOC120557218 rbm39,LOC106937047,LOC103363772,LOC103131234 coding downstream 921039 44500044 ~ 44510159 (+)
G45529 NA non-coding upstream 18330 43549120 ~ 43550279 (+)
G45528 NA non-coding upstream 23483 43544789 ~ 43545126 (+)
G45521 NA non-coding upstream 71950 43496416 ~ 43496659 (+)
G45509 NA non-coding upstream 149002 43419209 ~ 43419607 (+)
G45501 NA non-coding upstream 349167 43218942 ~ 43219442 (+)
G45538 NA non-coding downstream 34393 43613398 ~ 43613598 (+)
G45539 NA non-coding downstream 36845 43615850 ~ 43616092 (+)
G45540 NA non-coding downstream 43302 43622307 ~ 43702008 (+)
G45543 NA non-coding downstream 64669 43643674 ~ 43643900 (+)
G45550 NA non-coding downstream 189866 43768871 ~ 43769072 (+)
rbm15b rbm15b,LOC102788268 other upstream 910221 42654788 ~ 42658388 (+)
G45237 NA other upstream 1266714 42278285 ~ 42301895 (+)
map1lc3a map1lc3a,LOC107551126 other upstream 1656492 41905529 ~ 41912117 (+)
dynlrb1 dynlrb1,LOC106565026 other upstream 1665978 41896995 ~ 41902631 (+)
G45186 NA other upstream 1688242 41869730 ~ 41880367 (+)
G45557 NA other downstream 259379 43838384 ~ 43838852 (+)
G45577 NA other downstream 377822 43956827 ~ 43957173 (+)
G45635 NA other downstream 781781 44360786 ~ 44468991 (+)
G45647 NA other downstream 824898 44403903 ~ 44407449 (+)
tsen2 tsen2,LOC102785813 other downstream 909951 44488956 ~ 44499296 (+)

Expression


Co-expression Network