cfap20dc (LOC104955207,LOC103360140)


Basic Information

Item Value
gene id cfap20dc
gene name LOC104955207,LOC103360140
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 19013192 ~ 19053017 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039796393.1
CTAAAACTGGTTACTTGCTTGTAGTTGTTCTATATCTAGGGATtagatagctagctaggtttGGGGTAACGTTAATGTAAACAGATAGTAAAAACTGGGTTAACTCGTACGACAAATATAATGTTTCGGAATTTTTTTCAGGGTGGATCTGTGGTTGAGATCTTTAGTGGACAAGGAAAAGACCCTGTAGAAAAATGGAAACTTTGCGGAGGTCCGTCATCCATACATAAGgagTACAATAAAGAAGTCAAAGGGTTTGTTTACTGCCTGGAGGGTAGCAGCCAGACAGTCAAGATGCAAATGCCAgagaatgggaaaatgtcactTGGACTTCTTCAAAGATTCTTGGTCCTTCAAGTCAATATTCCCCCATGTAAAGATTTTTCCATTGAGCTTGTGACAACTGATTTAGAGCACCTGAAAAGAAGACTTCACTTATCAACAGTACATAAAGAGTTGTCTGCCACACTTTTGCATGCAAAGATACCTTTTGTAGGATTGAAACGCAGTATTTGGTCTACTTTGTGCATCGACCTTGTGTCATTCACCGGTGAACTGTTCAAGGGGTTTTTGACACTGGATGGCATCACATTGTTTGCTACCTGTAAAGTCCGCAGAATCTTCACCATGAAAACAGAGCCTACAGGAATGTCAGATGATGATGTGTTTCTCCGTGGAGCTGGTCTCATGGACTTGATCCCTCGCAGTTGCCATTTCCCAGCAGACGTAAACCATGTCACTCAGGTGTTGAACATGGAGAATTTTCGGAAGGCAGATACGAGGGctggactgttgagctctgacTGTGTTCCTGATCAGTCTACCACTGCCAGATCAACCAGTTATCGACGATCTAGGCCACAGGGTGTCTTACACACAGCCTCAGGCTTCAGGGTTTCAGGGCCACCCCCTCAAACTGGAAGAAGCAGTGCAGCCTCAGACGGAATGGAAGGAAGTGCACTCTTTATCTCTAATACGGGATCTCCGTCCAGTAGATTGAACCAGAAAATGACTGCAGAAAGTGAGAGCATTGCCAGGCTGAGTGAGAATTTATCACACGGAGAACCTTCCCACATTCTTCTTGAGGGAACACCATGCAGTTTACAGCCCCATCCCCCAAAAGACAGAGTGTTTGACAAGCCGGGATCTAAGAAGCCACGGGTCTACAGTGCTGGAAGAGAGAGGCTACCATTGTCAGCCTCTCCAGATGCTGTACCTGGCCACAGAAAGAGAAGTAAAACCAGGGAGAAGTGCACGCCCCCACCCAGTAGGCAAGAGAGCAAGCAACAACATCTGACCCTAACAGAAAAGACAAAGCACCAAACAGCAGATGAGTGTAGATGCGCTCCCGCCAAGGAAAGTTCAGGAGCTGCTCCCACACCAGCAGAGTCTCTCTCCTGCTCGATCTGTCCAGGTTTGTCTTGTGACCTGCAGGTCTGGAGCAGCTGGGAGAATAATGAAGGGTCAGAGCCCCAGCTCACTCTGCAAGAGGAGGTGTTCACTTTCTTTTCCCAGCCACACTTACCCAAACGAGGGCAAGGCCAGGGTGACCAGGAGAAGATGGAGCTGGGAGATGATCAGGTTCAGAGCAAAAGTGGGAGGCGGTATGAGGCCCAGCCTGAGGATGACTTTATCGGCAGTGAAAGTGATGAGGATAAGAGCTACACCAAGTTCAACCCAGCTACTCCCAGATCTCCCAGTCCAACCTTGGATGGGCAACTTGAAGTCCATCCTGAATCTCATAACATGGACAAAACAACACCAAAGGAGCTCAGTCCAGCTACCACCGGTATGCATTCTCCATCCAGTGGGAGAGCTGAACCAGTTGGGATCGCCCCCACACGCTGCCTCTCACCCAGTGCGACACCCAGCAGACAGGAACACAAGTGTGGCCCACGTGGATCAGAGGTTGTGAACCACGTTCTGGATGAGAACAGCAGTGTATCGCTTTCAAGAAGACTTCTGCAAGAAGTCAAAATAGACTACTCCACACAGCACAAGGTGAACATTCTAAAGGAAGAAGACAACACACTGAAGCCTGTTGACTCCAGCGATAACAACTTACACCTGCTTAGCAGTCTACGAATGCATGCGGATGATGATGACGAGCTTCGAATGCTGGCAAGTCTTAAAAGGGAGCAGGAGGAAGATGAATGTAGAGCCTCGGGCCTCAGTGCATCTCAGATCCACCACTGTAATGTCAGCATCAGCATGAGCAGTGATGATGCATCTACATGGACCCACATCTCCATGCCAGCTAATCAGGGTCACCACTATCAGAAGGAAATGAACCCCCTCCTGCAATCAAACCCCAGGGAGTGGATGGATGTGCTCAGCCCTCCCATTATGCCTCCCAGCCAGCGGAGAAGGTCAGGCAACACATGGAACCATTTGGAAGATCTAATCGGAGGACGGGATGAGTCGGTGaatgaagaggagaaggaggatgaGTATTTGAATCTGCTCTATGATCCATGCCTGAACTGCTATTTCGACCCAAAGACGGGGAAATACTATGAACTAGCTTGACTCAAAGCTTAAGAGAATctaaattaataaatcagaagTTTTTGAATGGCGGGGATGAATGGCGTCATCAATCTTTTTGAGGCCTAGCTTATTGATCAGCAATGAAAACCCCATTCACAAGAATCTTTCCATGTTGCTGCTTTTGTTTCTGAGAAACTAACAGGAGCTTTGTGTCTCCATGAATAGACATGGTAGTGTGTAAGGGAGTGGGACTCAATAAATCAGATACATGCTCTTTGCAAGAAATTGAGTAGTTGCCCATTCAGTAGCACATCTGGTAGAAAGAGTCTTTTCAGAAGTTTTGGCTAGCAAATTAACATGTAAGCCTTTTGAAAGAACATCCTGTAGCTTCTTTTTTACCAAAATGATTTCTGAAATTAAATTTTTGCCTGTATATTAGTATTacagaaaaagttgttttgtTCTTTATCATAATTTGTGAAAAACAGATa
>XM_039796395.1
CTAAAACTGGTTACTTGCTTGTAGTTGTTCTATATCTAGGGATtagatagctagctaggtttGGGGTAACGTTAATGTAAACAGATAGTAAAAACTGGGTTAACTCGTACGACAAATATAATGTTTCGGAATTTTTTTCAGGGTGGATCTGTGGTTGAGATCTTTAGTGGACAAGGAAAAGACCCTGTAGAAAAATGGAAACTTTGCGGAGGTCCGTCATCCATACATAAGgagTACAATAAAGAAGTCAAAGGGTTTGTTTACTGCCTGGAGGGTAGCAGCCAGACAGTCAAGATGCAAATGCCAgagaatgggaaaatgtcactTGGACTTCTTCAAAGATTCTTGGTCCTTCAAGTCAATATTCCCCCATGTAAAGATTTTTCCATTGAGCTTGTGACAACTGATTTAGAGCACCTGAAAAGAAGACTTCACTTATCAACAGTACATAAAGAGTTGTCTGCCACACTTTTGCATGCAAAGATACCTTTTGTAGGATTGAAACGCAGTATTTGGTCTACTTTGTGCATCGACCTTGTGTCATTCACCGGTGAACTGTTCAAGGGGTTTTTGACACTGGATGGCATCACATTGTTTGCTACCTGTAAAGTCCGCAGAATCTTCACCATGAAAACAGAGCCTACAGGAATGTCAGATGATGATGTGTTTCTCCGTGGAGCTGGTCTCATGGACTTGATCCCTCGCAGTTGCCATTTCCCAGCAGACGTAAACCATGTCACTCAGGTGTTGAACATGGAGAATTTTCGGAAGGCAGATACGAGGGctggactgttgagctctgacTGTGTTCCTGATCAGTCTACCACTGCCAGATCAACCAGTTATCGACGATCTAGGCCACAGGGTGTCTTACACACAGCCTCAGGCTTCAGGGTTTCAGGGCCACCCCCTCAAACTGGAAGAAGCAGTGCAGCCTCAGACGGAATGGAAGGAAGTGCACTCTTTATCTCTAATACGGGATCTCCGTCCAGTAGATTGAACCAGAAAATGACTGCAGAAAGTGAGAGCATTGCCAGGCTGAGTGAGAATTTATCACACGGAGAACCTTCCCACATTCTTCTTGAGGGAACACCATGCAGTTTACAGCCCCATCCCCCAAAAGACAGAGTGTTTGACAAGCCGGGATCTAAGAAGCCACGGGTCTACAGTGCTGGAAGAGAGAGGCTACCATTGTCAGCCTCTCCAGATGCTGTACCTGGCCACAGAAAGAGAAGTAAAACCAGGGAGAAGTGCACGCCCCCACCCAGTAGGCAAGAGAGCAAGCAACAACATCTGACCCTAACAGAAAAGACAAAGCACCAAACAGCAGATGAGTGTAGATGCGCTCCCGCCAAGGAAAGTTCAGGAGCTGCTCCCACACCAGCAGAGTCTCTCTCCTGCTCGATCTGTCCAGGTTTGTCTTGTGACCTGCAGGTCTGGAGCAGCTGGGAGAATAATGAAGGGTCAGAGCCCCAGCTCACTCTGCAAGAGGAGGTGTTCACTTTCTTTTCCCAGCCACACTTACCCAAACGAGGGCAAGGCCAGGGTGACCAGGAGAAGATGGAGCTGGGAGATGATCAGGTTCAGAGCAAAAGTGGGAGGCGGTATGAGGCCCAGCCTGAGGATGACTTTATCGGCAGTGAAAGTGATGAGGTGAACATTCTAAAGGAAGAAGACAACACACTGAAGCCTGTTGACTCCAGCGATAACAACTTACACCTGCTTAGCAGTCTACGAATGCATGCGGATGATGATGACGAGCTTCGAATGCTGGCAAGTCTTAAAAGGGAGCAGGAGGAAGATGAATGTAGAGCCTCGGGCCTCAGTGCATCTCAGATCCACCACTGTAATGTCAGCATCAGCATGAGCAGTGATGATGCATCTACATGGACCCACATCTCCATGCCAGCTAATCAGGGTCACCACTATCAGAAGGAAATGAACCCCCTCCTGCAATCAAACCCCAGGGAGTGGATGGATGTGCTCAGCCCTCCCATTATGCCTCCCAGCCAGCGGAGAAGGTCAGGCAACACATGGAACCATTTGGAAGATCTAATCGGAGGACGGGATGAGTCGGTGaatgaagaggagaaggaggatgaGTATTTGAATCTGCTCTATGATCCATGCCTGAACTGCTATTTCGACCCAAAGACGGGGAAATACTATGAACTAGCTTGACTCAAAGCTTAAGAGAATctaaattaataaatcagaagTTTTTGAATGGCGGGGATGAATGGCGTCATCAATCTTTTTGAGGCCTAGCTTATTGATCAGCAATGAAAACCCCATTCACAAGAATCTTTCCATGTTGCTGCTTTTGTTTCTGAGAAACTAACAGGAGCTTTGTGTCTCCATGAATAGACATGGTAGTGTGTAAGGGAGTGGGACTCAATAAATCAGATACATGCTCTTTGCAAGAAATTGAGTAGTTGCCCATTCAGTAGCACATCTGGTAGAAAGAGTCTTTTCAGAAGTTTTGGCTAGCAAATTAACATGTAAGCCTTTTGAAAGAACATCCTGTAGCTTCTTTTTTACCAAAATGATTTCTGAAATTAAATTTTTGCCTGTATATTAGTATTacagaaaaagttgttttgtTCTTTATCATAATTTGTGAAAAACAGATa

Function

NR:

description
uncharacterized protein C3orf67 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039796393.1 True 2981 mRNA 0.46 17 19013192 19053017
XM_039796395.1 False 2633 mRNA 0.46 16 19013192 19053017

Neighbor

gene id symbol gene type direction distance location
cadpsb cadps,LOC102781224 coding upstream 177724 18771566 ~ 18835468 (+)
LOC120557775 LOC100711209 coding upstream 275333 18732099 ~ 18737859 (+)
LOC120557639 LOC101468781,LOC102197536,LOC100705767,LOC102779027 coding upstream 290961 18712940 ~ 18722231 (+)
fkbp5 fkbp5,LOC102778077,LOC101485431 coding upstream 348607 18651305 ~ 18664585 (+)
LOC120556859 NA coding upstream 368075 18639859 ~ 18645117 (+)
si:dkeyp-67f1.2 NA coding downstream 7344 19060361 ~ 19062911 (+)
LOC120556926 fam107a coding downstream 10592 19063609 ~ 19069974 (+)
pbrm1l LOC103360180,LOC102204824,LOC102785351,LOC101477452 coding downstream 43096 19096113 ~ 19109230 (+)
stau1 stau1 coding downstream 56363 19109380 ~ 19123406 (+)
si:dkey-7k24.5 LOC103360585 coding downstream 77260 19130277 ~ 19136486 (+)
G40049 NA non-coding upstream 24508 18988444 ~ 18988684 (+)
G39935 NA non-coding upstream 410092 18601716 ~ 18603100 (+)
G39934 NA non-coding upstream 413963 18599024 ~ 18599229 (+)
G39927 NA non-coding upstream 438981 18573982 ~ 18574211 (+)
G39926 NA non-coding upstream 439283 18573682 ~ 18573909 (+)
G40064 NA non-coding downstream 1111 19054128 ~ 19058578 (+)
G40073 NA non-coding downstream 22723 19075740 ~ 19077037 (+)
G40104 LOC102787023,LOC103360233,LOC102206431,LOC101476705 non-coding downstream 115819 19168836 ~ 19169391 (+)
G40109 NA non-coding downstream 120132 19173149 ~ 19178937 (+)
G40139 NA non-coding downstream 192756 19245773 ~ 19248346 (+)
LOC120557740 acy1 other upstream 786614 18215706 ~ 18226578 (+)
tusc2b LOC104925135,LOC103359746,LOC102226579,LOC103137991 other upstream 818281 18189582 ~ 18194911 (+)
wnk2 wnk2,LOC104946158 other upstream 1083074 17904698 ~ 17930118 (+)
LOC120556838 NA other upstream 1279181 17720441 ~ 17734011 (+)
G39581 LOC104949003,LOC103357913 other upstream 1403976 17607930 ~ 17609216 (+)
oxtrl LOC104920519,LOC103360274,LOC100702815,LOC102207462,LOC102295060 other downstream 243242 19296259 ~ 19314826 (+)
G40164 LOC103360294,LOC104965627,LOC100702547 other downstream 271812 19324829 ~ 19326625 (+)
brk1 brk1,BRK1,LOC106565571 other downstream 371849 19424866 ~ 19426456 (+)
slc38a3b LOC103360384 other downstream 388991 19442008 ~ 19470998 (+)
LOC120557344 LOC104966310 other downstream 564164 19617181 ~ 19632519 (+)

Expression


Co-expression Network