fmoda (LOC104959962,LOC103367868)


Basic Information

Item Value
gene id fmoda
gene name LOC104959962,LOC103367868
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 14112976 ~ 14119447 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039796397.1
TGGAGAGGGGGATGGCAGAAATGAAAGGAGAGCAGGGAGCGGAGGAACATGTTTTTTACAAAGTGTTTCTCAGAGTCCCCTTCAGTCCTGAGCACACTCTGAGAGAGAGCGGGAACAAGGAGGGCAAGCCTCTCTGAtcagTGAAGATTTGTATGACTGTGACCATGCGTGCGGTGACTGTCTTCCTCTTGTCTGCCCTTCTTCCACTCTCTTGCTCCCATGGACAAGACCCCTTCGCCTGGCTGTACGGCCCCCAGAGCCAAAGATTTGGCTCCCTGCAGGCAGACACCACAGGAGGGTGTCCAGATGAGTGTGATTGCCCTCCCTCCTTCCCAGTCGCCATGTACTGTGATGGGCGGGGCCTGACAGCCATGCCAACCATCCCCTCCCGTGTGAAATACTTGTACCTCCAAAACAATGCCATCACAGCTGTGTCCGACTCAGCTCTAGTAAATGCAACCAATCTGGTGTGGCTGATGATGCACCACAACCAGCTGACATCTGACGCCATTGGCAAGAAGgcaTTTATGCAGTTGCAGGGACTAGAGCGTTTATATCTACAACACAACAATTTGACTGGCTTTCCTTCAAACCTCCCTCGCACCCTGCGAGACCTGAGAATCAACCACAACAAGATTGAAAAGGTAACAGCTGCAGACCTAGAGGGAATGGATAATCTCACTATCCTGTATCTCCATGACAACGCTGTCACAGACATGGGAACATCCCTGAAGGCACTGAAATCCCTCACACTGCTGGACATCAGCAGCAACAAGTTGACTAAGGTCCCAGAGGCACTCCCCGAAAATCTGCACCAACTTTACCTGGAGTCCAACTCCATTGATTCTCTACCAGAGGGCTTCTTAGGCCGTTTCACTCAGCTGCAGTATGTCAGGATGGCTCACAATCAGCTAACAGACAAGGGTATCCCTGCCAACACCTTTAATGTGACTGGGCTGGTGGAGCTAGACCTGAGCTACAATAAACTGGAGAGAATCCCCCCTGTGAGCACCACACTGCAGCATCTCTATATGCAAGCCAACCAGATCAAAGAGTTCACTCTGGGTAGTTTCTGCAGCGTCGTGGATGTGACCAACTTCTCTAAGCTCCAGACGCTGCGACTGGATGGGAATGAGATCAGTCGCCAGGACATCCCAACAGAGTCGACCCTCTGCTTGCGCCTGGCTTCCAGCATTGAGGTCTAACTGTGCGTATGACACAATATGTGGCACTCTGCTCACAAACACAGAGCAGTTTACAACATGCATCgaaagtgtgaaataatttGTGTGATGTGCCAAAGCCAAAGCACAGCAGGGGCGACAATATCATTTAATCTCGAAAGCAGGTGGCAGCAGTTCTTACTGATATATCCACAGTTCACATCACAGCGAAAACAACAGTTGTCATATGTGGTTGTTTGCATGACAGCCGTTTTACAGCAATTGGAAAAGCTTTACCAGATATGTCATATTGCACAAGCTACTTTTAGATGTGAACTTCTCTAACAATTGGACGAATGACCAAGTCTGGTTTTATTTGATTAAATACAGGTAATAAGATACAGGAGCCCcatatgatgtttttttgtattgaaaATGATCTTACCATTACCCTCCTTATATGCTGTGAGGATCAATGATCTGTGTAATCAGtgttttttatctgtttttatctaTCTTCCTACAAAGCATGCCTTCCATTGTTTTGTCTGATAAGTTGATGATAAAAATATTATGTATTATGGATGATGTGAATTGTTTAATTTCGAACCATTAGCTGTTGTAGAAGCATGACAATATCTTCATCACTTCTCTGACGTCCATGTCCCAATATTTAGGTGCATTCATTTTTCTTTGTGATAAAAATGCTTTGACTGTTAGTGTCTGTAGAAGATGTTCTTGTTTCTTGAAATCAACTTCCCTCAGAGACATAGCTAGATATCTATGTTCCATGTGAAAAATATAtctacactgtactgtagtGAATCACGCAAAGGGCTTTGTGTGTATGAATTATGATTCTCGAATTACTGTATGCATTACATGGATTTGTCATCTTTCTGACAAAGGATTTATGTTTACCAGCCTATTgcagaataaataaaagttggGATTTTTAAAAAGA

Function

NR:

description
fibromodulin-like

GO: NA

KEGG:

id description
K08121 FMOD; fibromodulin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039796397.1 True 2127 mRNA 0.45 6 14112976 14119447

Neighbor

gene id symbol gene type direction distance location
mapkapk2a mapkapk2,LOC104959968 coding upstream 67754 14006356 ~ 14045222 (+)
dyrk3 dyrk3 coding upstream 124464 13978736 ~ 13988512 (+)
LOC120557195 rassf5,LOC104925239 coding upstream 136610 13964299 ~ 13976366 (+)
LOC120557194 NA coding upstream 157080 13943758 ~ 13955896 (+)
ikbke ikbke coding upstream 171677 13920513 ~ 13941299 (+)
slc6a14 slc6a14,LOC103367878 coding downstream 2168 14121615 ~ 14132772 (+)
lrrn2 LOC104948560,LOC103359348 coding downstream 34684 14154131 ~ 14164411 (+)
rh50 LOC107395613,LOC108235666,LOC106513294,LOC100692870,LOC103359386,LOC101474088,LOC102304555 coding downstream 86722 14206169 ~ 14209691 (+)
LOC120557951 LOC103359350,LOC103386010,LOC102306603,LOC101466691 coding downstream 101575 14221022 ~ 14226084 (+)
LOC120557947 LOC104954762 coding downstream 122979 14242426 ~ 14248447 (+)
G38206 NA non-coding upstream 67417 14045357 ~ 14045559 (+)
G38164 NA non-coding upstream 109789 14002962 ~ 14003187 (+)
G38163 NA non-coding upstream 120797 13991909 ~ 13992179 (+)
G38156 NA non-coding upstream 123135 13911329 ~ 13989841 (+)
LOC120556887 NA non-coding upstream 335826 13775781 ~ 13777150 (+)
G38247 NA non-coding downstream 73656 14193103 ~ 14195417 (+)
G38274 NA non-coding downstream 174486 14293933 ~ 14294157 (+)
G38276 NA non-coding downstream 186313 14305760 ~ 14308441 (+)
G38317 kdm5b,LOC108235655 non-coding downstream 345527 14464974 ~ 14466684 (+)
G38331 NA non-coding downstream 373456 14492903 ~ 14494740 (+)
tfeb tfeb other upstream 584657 13456929 ~ 13528319 (+)
mdm4 mdm4 other upstream 740604 13319684 ~ 13372372 (+)
per3 per3 other upstream 783644 13305415 ~ 13329332 (+)
vamp3 vamp3 other upstream 809361 13296376 ~ 13303615 (+)
spcs1 spcs1 other upstream 904718 13205469 ~ 13208258 (+)
LOC120557956 nrn1,LOC104931831,LOC102785075,LOC100692329,LOC102195708,LOC102307414 other downstream 107650 14227097 ~ 14233537 (+)
LOC120557952 mettl21b other downstream 215713 14335160 ~ 14337760 (+)
cdk4 LOC107684003,LOC107701179 other downstream 621162 14740609 ~ 14757359 (+)
znf740a LOC107385642,LOC101469799,LOC102214350,LOC102304359,LOC103376569,LOC107082105,LOC100709046 other downstream 645850 14765297 ~ 14857069 (+)
G38517 NA other downstream 688905 14808352 ~ 14816436 (+)

Expression


Co-expression Network