LOC120556777 (gpr84,LOC108235641)


Basic Information

Item Value
gene id LOC120556777
gene name gpr84,LOC108235641
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 15713249 ~ 15715495 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039796501.1
CAGAGGATGCACATAAAATGTAACACCAGCAGGAAGCCAGACATTCAGCGCACCTGATCACTGAAGAGAATGACATAGATACACATCAGCAATTAGTAAGACTGGCAGAAATCTTCAGCTTTAAGTTGACAGAATGCTGATGAACTACACCAACCAAACAGAGGATGACCTCTTCTCCTGCTACAGTCCTTCAGTCGTAGGCTACCGGTACTTTGCTGTGCTGTGGGGATGTGCTGTGACCATCACTGGTACGGTGGGGAACCTGATGACCATTCTGGCCTTCGCCTTAGACCCACGTCTGAGGACTCGCTTCAATGTGCTCATCATCAACCTGGCTGTAGCTGATCTCCTGTACTGCACCGTACTGCAGCCCATATCAATTGACTCCTATCTACACCTCAGGTGGcgcagtggtcagctctggtgcAGCATCTTTggcctgctcctcttcctctccaacTCTGTCTCCATTATCACCCTCTGCCTGGTAGCGGTGAGCCGATATCTACTGGTCACAAAGAGGGCTGTGTTTGACCGTGTCTTCTCTGACCGTGGTCTTATCCTACTCCTGATCTCAGCGTGGGCACTGGGCTTTGCCAGCTTTGGCCCTCTCTGGCCTGTTTACGTGTTTGTGCCACAGGTGTGCACATGCAGCTTCCATCGTACCAGGGGTCGTCCTTACAGCACCATCTTGctctttttctacttttttgtgGGTCTGGGCTGTGTTGGTGTATTCTACTTCCTCATTTACAGACGTGTCAGGATTGCAGCTCAAGCTCTGCTCCGCTACAGGTTCAGCCGCCGGTCCTCCAGGAAGAAACCAGCATCTTCAGCACAAGGGACTGATGACAGTGGTGTAGAGAGTGGCACGGCAAAGACATGCAGCTGTGAGGTGAGCAGCCAGATGGATTTAACCCAAAGTATGGATGAGATCACCTGTGAAAAATCCTCCAAATCTGCCCAGACCTCTGCCAAGGCCCTAAATTCATCAGCAACCAATTCTCCCCCTGAAACATTACCTTCAACCACACCTGCTCCGACCACTGCAGCACCCTCTTCCCAATCAGCAACTTCAGGAGATGATGACGAATTTAAGCGTGTGACACGCATGTGTTTCACAGTTTTTCTCTGTTTCGTGTTCTGCTTTGTCCCCTTCATGTTGCTCAACATAGCAGACAAACAAAACCGTGCCCCACAGGTACTGCACAtgttctctgcaaatctcacgtGGCTCAACAGCTGTATCAACCCCATGCTCTATGCTGTCATGAACAGACAGTTTCGACAGGCCTACCATGTGCTGCTCACCAGGGCTGCTGCACCATTCACCTGCCTCTGGACCTGGTGGTCATCACTGAGATCCTAAACTCTTCATCCTAAAGCTTAAACTTGCCTGATGTTCATCCTGATGTAAACCcactataataatattattattgtgaaatacACAGACATAGGCATCTACATTCAGCCACTTTTAACTTTTAAGTTGCTTTTCTGTTACATTTGTGTTTCATTAACATTTCAGACTGCATTTGCAGTTTGCCTTTTCAGTATATTATGTATGTAcaagattacattatgtgtttaTGTCATGTATGGAATAAAGTCTATTTTGTAATATATAA

Function

symbol description
gpr84 Predicted to enable urotensin II receptor activity. Acts upstream of or within response to lipopolysaccharide. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including digestive system; heart; lateral line; macrophage; and ovary. Orthologous to human GPR84 (G protein-coupled receptor 84).

NR:

description
PREDICTED: G-protein coupled receptor 84

GO: NA

KEGG:

id description
K08421 GPR84; G protein-coupled receptor 84

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039796501.1 True 1631 mRNA 0.47 2 15713249 15715495

Neighbor

gene id symbol gene type direction distance location
LOC120556700 NA coding upstream 2359 15710216 ~ 15710890 (+)
LOC120557865 LOC103376609,LOC103465378 coding upstream 4109 15676867 ~ 15709140 (+)
endou endou,LOC102787429 coding upstream 51253 15657531 ~ 15661996 (+)
smarcc2 smarcc2,LOC102786132 coding upstream 69694 15631352 ~ 15643555 (+)
LOC120556683 LOC102785850,LOC100702077,LOC102299981,LOC103376602,LOC102207065,LOC102237428 coding upstream 87204 15606682 ~ 15626045 (+)
tac3b NA coding downstream 21050 15736545 ~ 15741669 (+)
b4galnt1b b4galnt1,LOC104942127 coding downstream 56694 15772189 ~ 15789905 (+)
ankrd33ab LOC103367911 coding downstream 103128 15818623 ~ 15823565 (+)
LOC120556934 LOC104941416,LOC101064200 coding downstream 108888 15824383 ~ 15833934 (+)
LOC120557571 ikzf4 coding downstream 136502 15851997 ~ 15859771 (+)
G38832 NA non-coding upstream 68850 15644061 ~ 15644399 (+)
G38829 NA non-coding upstream 86409 15626311 ~ 15626840 (+)
G38788 espl1 non-coding upstream 169877 15542253 ~ 15543372 (+)
G38762 NA non-coding upstream 249797 15462301 ~ 15463452 (+)
G38738 scn8a,LOC106518053,LOC106572732,LOC103465359,LOC108440919 non-coding upstream 315742 15396729 ~ 15397507 (+)
G38858 NA non-coding downstream 3501 15718996 ~ 15722184 (+)
G38860 NA non-coding downstream 12484 15727979 ~ 15729400 (+)
G38885 LOC104942130 non-coding downstream 45297 15760792 ~ 15762315 (+)
G38948 NA non-coding downstream 199044 15914539 ~ 15914901 (+)
LOC120557201 NA non-coding downstream 203890 15919385 ~ 15921622 (+)
G38834 NA other upstream 65398 15645511 ~ 15647851 (+)
calcoco1b LOC104959845,LOC103376572 other upstream 838790 14865059 ~ 14874459 (+)
znf740a LOC107385642,LOC101469799,LOC102214350,LOC102304359,LOC103376569,LOC107082105,LOC100709046 other upstream 856180 14765297 ~ 14857069 (+)
G38517 NA other upstream 896813 14808352 ~ 14816436 (+)
cdk4 LOC107684003,LOC107701179 other upstream 955890 14740609 ~ 14757359 (+)
crbn crbn,LOC102793823 other downstream 207826 15923321 ~ 15937097 (+)
ccdc174 ccdc174 other downstream 249907 15965402 ~ 15974237 (+)
eefsec eefsec,LOC102787825 other downstream 334183 16049678 ~ 16060330 (+)
LOC120557902 rab7,rab7a,LOC102230535,LOC106583206,LOC105017191,LOC101061812 other downstream 433630 16149125 ~ 16158362 (+)
G39104 LOC103385912,LOC104930488,LOC103358732,LOC101079922 other downstream 717743 16433238 ~ 16435229 (+)

Expression


Co-expression Network