LOC120556778 (arhgap40)


Basic Information

Item Value
gene id LOC120556778
gene name arhgap40
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 23106818 ~ 23126652 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039796502.1
GGGGGGCTGTTGTGACTTGAAGCTCATGTATGGATTAAGCTACTTTGCTACTATTAGGTTAATCTTGATATTGGTGCTGAGCAAGGTTGTTAAAACAGATTTCTTCTGTCACTCCACACTTTGGTTTTACTtttttagtttccatgcttttattgtgttttttttagggaCTTTTGTTTAGGATTTTCTGTATCATAGGACAGACCCTACATGCTGTGACATGGTTTGACAAGAAACACTTTCTCAAGACTGTGTTGTATTCTCTGCAAGCTAGGAGGCTTGCAACGGAATTCAGCCACGAGGATTTAACAGTTTTGCTTCATGCGAGCCGCTTTTTCAAGTGGATTATCGTGTTTCTTGTTGGGGTTACTTTGTGTTGTTTTACACAGTGCTGAGTATGAACGTAAgacaatagtttgacattttggccaTTCTTCTCTCAGACTGGATGGTTTCCTGTTGATTCTCTGTATTCGTTTGGGGCCCATTAAACAAGAAACAATCACAACACCCTGACATTTTCAGTAGTCCCCGTTTTCAATTGTCTATTTAGAGAAGTAGCATGGacaatgtgttttgttttgtggctAAGCTTTATAACTTGTTGGCATGGTGAGGAGTATTATTACCAGGTTTAAAAATAAGACAATGCTGCTTTTCCTCTTGATTCTCAAGGCGAACAAGGAagatttcttcttctccttttacTCTTTAGAATTTGTCCTCTGAGGGTATTCTGTGGAGATGTTGCTGGCATACTttgttttaggtcattttagtTATTGGTCAGGCTCAACACTCGTATGCCAAACTGTAGAGGTTGAAGTAGCTGGTTAGGCTCTTCCTTGTAGGCGACACATCTTTGTTGAGATGAAATAGTGAAAATAGTAAATTAGAAGGTTTCACTAAAATGACCCGAGTGTCAAAACCACTAGAACCTTTTTCTCCTAATCTCACCAGGCATCTGATTctgtctgtttacatattcagcTGATACATTGGCTGTCATCAGCATGACAAGAAAGAATGAAAAAGTGATGACGAGTCAGTGATTTTGTGAGGAGTTACGGTGCTGCTCACAGACAATGTTGACAGACCTGTTGCACTTGAGGAATTTAAGACACGTTCTCTTGCTCTACCTTGTTCTCATAGAGATGAGATCACATCTACACTCTATTTATGTCAAAAGTTACGAGGGCTCAGGTATGAGGTTGAACTATGATGTTACAATAAGTCACTATCTTCTGCTAAGGCATGGTTTAATGTAACATTCCACTTTATTAGCTGTCACACCGCAAGTACTGTATGTGCCGTTTAATTTGAGATTTCCTGTTTGCAATGCAAGATCAACCACAGAGTTTGAAAAGGAAGAAAACCTCTTCATCCATTTGATTAACTTAAGCAAATAGCTGATGACATGCCTCATCTTTTCAACACAGAAACCTTGATTAATAAGATCAAGTGAAGTTGTGTAGCTTTCACTAAAAGGCCAATAAAGTTTACGTCCCGGACCTTTACCTGGACTAGGTAAAGCTAATTGTCACGTTACAGCCCAAAGTGTTTGAACTAGtttaaaacaaatgtcaaacattCTTGTTTAAACCAGCTTTGATGGCCATCAGGCATGCATGCAGGGCGTGTCACCTCAGGGTGGCTTGGGAGCGAACAGGTGTGAAtaatgtgttgatgtgtgtcgTCACTCCGTCCTGCATTCCAGCTCCACACCACACAGCCACTCAGTGATGTCTTTACAACAACACTTCCTGTCAGCGCACAGAGAAACCGAGAAACCAGAGCAGTGAACAGATTTACACCGCACTCACATGGTGTCCCACCAACAGGACTGGATATAGCTTTGTGGCGGATTGTAATTCCTGGATTCCTTTAGCATTGTGGAtatgggaggaggagaggaggtatTGGTGAGCAGGAACGGGTCCACCATGCAGTTTCCACGCACCAGTTTGAACCGTTTCAGGCTCCGTCCTTCCCAAAGCCCAGTGGGGAGAAGGCGCATAAAACCATCCTCCCTACAGAAAAAAGCCAGAAATCCCAGCCCCACCGAGATGAGCGTGGAGCCCTGGGCCAGCCCGCAGGACCAGGCAGCCGCTGAGCACGCACACAGCACGCACACGCCATCCTCCCAGGATCAGGAGCAGCACCCCGACAAACTCTGCCTGGACTCGTTCTGGAGTGAGGTGGAGACCATCCGACAGGGGAGTGGCTACACAGACCTTGACAGCACCAAGAGGGACTCCAGACAGTCAGAAGAAGGCGAACAGGAGGAGCAGTGGTTGGCCGATGCTGGTTTATCGACGCTCATCAGCGAGGACAGCGAGGATGTAGACAACACGGTGCTGCTGTTAACTCTGACCCGGACCCAGGCCGAGGCCGTCCAGCGGCGACTGGATTCCTACACGCTGTCGCTCCGCAAGAGGAACAAACCCGCACCGCGTGACGTTCGTGACATCTTCCACTCCCCCATCACTCAGACACTTCTGCCTGAGTCCCAGCATAGTGAAGAGCCTGCCCAAAACAGCATGGCATCAGTTGCCAAAACACCACTATCAGCTATGACAGCGGAGCATCGACGAGGCACTCCCAAAGAGGAAGTCTTCATCACCGACGTGGCTTACTGCGAACAGGCTGTCATCTTCCTTAAACAGGccaaactgccacagaacaaaAGCCAACGCAGAAAAGAGGATGGCACCCTGCCTCGGGTGGTCTGCCCTAAGTGCCGTCTGGGAGTGACTCGTATTCAGGATCTCTCCCACAGCGACATGAAGAAGGTGCGTCAGCTGGCTCTCATCGACATGACGGCGCTGTGCGACCTCTTAGAGCTGGAGGTTAAAAGGCACAAAACCAGCAAGAGGAAAATCCCAGAGAGCACGCTCTACGGGGTGCCGCTGGCGACGCTGCTGGAGAACGATCAGAAAATAAAACCCAACACCTCGACTCCTCTCTTCATGCAGGCGctgtTGTCATTTTTGGAGAAGAAAGGTGTCGATTCGGAGGGGATCCTGCGGGTTCCAGGATCTCAGTCCAGAATCAAGCATCTGCAGCAGAACTTGGAGAGCAACTTCTACTCAGGGCAGGTCAGCTGGGACGAGGTGAGTCCGAATGATGCCGCCGCGCTGCTCAAGAAGTTCATCCGGGAACTGCCCGCTCCTCTGCTCACCGCCGAGTACCTCAACACCTTCAGCGCCGCCCTCCTCGAGTTCCTCAGTAAGGTGGTTTCCAGGGAGAAGAGAAACAGGATGAACCTGTGGGCCGTAGCAACCATCATGGCTCCCAACCTCTTCCTCCATAAGGCCGTCCCCAGCAGACTGACTGAGGGGGCAGAGAAAGGGCATGCGGAGAAGGCAGCTGACGTCATGAGGCTCCTCATCCGCTACCAGGACCTGCTCTGGACGATCCCTAATTTCCTGATGAGCCAGGTGCGTAAGCTGAATGAGAACAGTAACCGGCGCTACCAGTTCTACGATCGCCGCATCAAGAACTTGCTGAGGAAGATCCACACAGACAGCCGTGAAAAACCTGATAAAAACACCTCAGATCCGTGCCGTACTGTGAAGATCCAGGTCGGGGATCTGGTGAGCGGCACAATGGAGTTCCCGCTCAACGTCAACTCCCGAGCCTCAGACCTGCTCGCCCAGTTTCAACACCAGTCCCTCCGCAGCCCCGACAATGGAAAGGGCAAAATGCGAAGAAACGGCTCTGTGGCGTATCCGGACTGCGCCCTGTATGAAGTGGGAGGGAATATTGGTGAACACTGCCTGGATCCCGACGCACACCTTCTGGATTTGTACAACACTAACACTGGAGGAGAGTGGGTCATCAAGCTGAAACCCAACGCCAGCAGAGGGCTGTGAAGGGTGGGCGAACAGTTTGGCAAACAGCTCGCCGGAGAAGGACAAAGGCATAGCataaaaaaaaggatcaaatCCATGCAGCCCTATCTTCTTGTATTTTTCATCCTTGGATCAACAAGGGAGAAGGAGACAGATGGAGGGAACAGAAACCAATAGATAGAGAATCTGCCAGGAGCAGAGCCTAAAAACTGGCTATAGTCAGATGAACACACTTtgccctctttctctttccctctctctctctctctctctctcactctctctatatcttccttctctttttttccctttgctCCATCATACCTCTCCTGCGTTGCCGCGGGGATGCAATGCTGCAAGTAGAAAGCCGCTGACGTGACTCATTACTTCAGACAGAAAACCTGCTGCatagaaaagagaggagagagagagagagagagagagagcagcttgGCAGTTTGGTTTGCCATCTTTTCTCTCAAGCAATCATCTCCAACCATGAGTGAGCAGATGGGGATGCAGAGCACCTCTGGTTATAGAGAGCAGAGGTCCCGCCTCCTGCTCAGGCCAGCCAGACAATGTGTTTTCATATCCTGGGTTTCATTCAGTCTTTTGCAAAAAGCTGAAACATGATTCAGGAGCTTTATGACAATATTCTTGGCTAAATTGGTGTCTTATAATGCACtggttttatataaaaaaaaaaaacatttattctgAGATTCATCAATTAACTTGGAAACGGCATTGTCACCACGAGGTCCATTCTGCTACTAAATGGACATACATTCTCTAGGAGAGATTTACCTGAGGAAAGCAGGTTTCTGGAAGCCCCCTAGCATAAATCAAGTTTCTCGTTTACATGACATGAAATCAGTTTACTGGAAAAGTCGACTGTAACTTAGACACTCAAGTGACCATTTAGCTTATGATATTTACAGAAAAACATATGTCCTGCCTTTTTAATTACTGATGATTAAAAACCAGGGAgagaaaaaatattgaaaactGAAAGCTAGTGGAACAGAAGCTAACCTGGAAATGGAGCGGGACTTCAGCTCTTTGTAAGCATACAGTTACCAACTGATCAATCAGTTAATCAACCGGCTGATCCCTCTAATCTGTCTCTCTGCTAACCGTTTTTCCAGCTCAGACATTTTGATCACAAAGTAAACAAAGACGGAGGGTTTTTCTCTGTATCGACTCCGTTCGTCTGTGCCATTCAAAGAGGGAAAGAGACCCAGATGAACCGATATCTTCTTATCTGTGAAACCTTGCGATCTCCTGGGccttataaaaaaaatccatggaCTTCCAAGGACCCCTGATTTGTACAGAACAGTGCTCAAagagacttttctttttttgataccAAGGGATTCAACCTCAAGGACAGTTATTGCACCTCTAAAGGGAATTGTTAAGGACACACAGTGAAGCTGGTCTTCAGTTCTCATTTTTAAACACATGAAAGTGCCAAAAGTACTGAAGTGACTCTTGGGGTATACTGggattattgttgttatttatCTGAATGTAATGCCATTGTTGCTTCTGTATTTGATGAGTATAATGTAGGCTAGAGAGACTTTAGGATAATGTGGAGTTGCTGCACTCAGTGTAACAGTATATTGTGTTAAGTCACCCATACTCAATGTGGGAATTTGTAGTGTTCCTGTACATATTTCTTCATATTTTCTTTACACCCTAaacagtacagtaacataaatgtgtaaatattcATGCATACACTCTGCTGTGAAGAGGCACTGAAATCACTGCAGTAGGACTGTTTTGATTGTGTTGCTACTCGAGGTATTCCAAACACACGCAAGCAGCAAATGAATGTGTTTAACATTTTGCGGCGATCGTTAGATGTGAATCATTTACTCCTCGCAGTCGGAGCCATGTTGGTACGCCGCAGCCATTTTGTGGGAAGTGTCTCCCACACTCCACTCAATAGATGGAGTAATGACAGTCGGCCCGGCACCAACATCTATCAACACCCTCCGCTCCATCTCTGTCACATCCCAATAATGGACCATAATGGCGGTGTGGTGCATGCATCAGAAACACGCTGAGGAATCACATTTCTTTCATAAAGGAGAAggtaataaatgtctgttataAATTCTGCTGCCCTGAACCTGATgacagcagctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgcgtgtgtgtgtgcgtgtgcgtgtgtgcgtgcatgtgtgtgatgaGCTTCATTACACAAGTCCAATTGGCCTGTCCCAGGGTCCCAGTTCAGTGCCTCAGCACAGAGCGAGCCGATGAAACTGCCTTCTGCTGACAATCAGGAGAACTAGGTCACCTCTGAAGCAGCCCCCCAGAGGCCAAGCAGTGTGAGTCCAAACACCCCTAGGAGCCCAGCACATGGACAAGTattgtgtaaacacacacacacaccacgatGTGGAGTCACCAAAACAGGGGGCACAAGTTCACACACTACatcatttttctgttgtttgtgtttgtacgTTATGaatgagtttgtgtgtgagagaaaaagaagacgCGTCCTTTGGGCTGGATAGCTCTGAAACAGTGTTATCTATATGATCACCCAGGGAGACTAAATGATAGACGGTTACAGGAACGTTTGTTGTGATCAAAGTGTGGTTGTGGACCTCTTATTGTCTTCATCAACGTCCAGCTTTTATTGTGGTGAAGATTTTAGACGTCAGTCAGCAGACGTCAGAATGTATATTTATGCCCTTTACACAAGTCATTGTTTTTAATACTTCTGTGAAAATAGTATTTGCTGTAGAAAGAAaaactttagaaaaatgtttttgtcaataaaTGTGAATCTAATGTGCTAAA

Function

symbol description
arhgap40 Predicted to enable GTPase activator activity. Predicted to be involved in regulation of actin filament polymerization and regulation of small GTPase mediated signal transduction. Predicted to be located in cytosol. Predicted to be active in cytoplasm.

NR:

description
PREDICTED: rho GTPase-activating protein 40 isoform X1

GO: NA

KEGG:

id description
K20639 ARHGAP18_28_40; Rho GTPase-activating protein 18/28/40

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039796502.1 True 6722 mRNA 0.46 14 23106818 23126652

Neighbor

gene id symbol gene type direction distance location
shmt2 LOC103359782,LOC102307393 coding upstream 171251 22909436 ~ 22935567 (+)
LOC120556810 nxph4,LOC103359783 coding upstream 200631 22860054 ~ 22906187 (+)
LOC120557968 stac3 coding upstream 336786 22761471 ~ 22770032 (+)
LOC120557262 r3hdm2 coding upstream 353305 22676522 ~ 22753513 (+)
arhgap9 arhgap9 coding upstream 552216 22507327 ~ 22554602 (+)
slc32a1 slc32a1,LOC102787607,LOC100693191 coding downstream 22423 23149075 ~ 23153670 (+)
LOC120557748 LOC103355891,LOC100710082 coding downstream 55797 23182449 ~ 23213859 (+)
ipo9 ipo9 coding downstream 107675 23234327 ~ 23254218 (+)
shisa4 shisa4,LOC102788956 coding downstream 129866 23256518 ~ 23265863 (+)
lmod1b lmod1 coding downstream 140197 23266849 ~ 23271555 (+)
G41099 ppp1r16b non-coding upstream 88553 23011482 ~ 23018265 (+)
G41092 LOC104950336 non-coding upstream 142686 22958128 ~ 22964132 (+)
LOC120556826 NA non-coding upstream 282662 22776241 ~ 22824156 (+)
G41041 gli1 non-coding upstream 510303 22595427 ~ 22596515 (+)
G41040 NA non-coding upstream 513735 22591672 ~ 22593083 (+)
G41112 NA non-coding downstream 32634 23159286 ~ 23161818 (+)
G41114 LOC104933616,LOC107385352,LOC103355892,LOC103464385 non-coding downstream 36877 23163529 ~ 23172306 (+)
G41118 NA non-coding downstream 87506 23214158 ~ 23215795 (+)
LOC120557222 NA non-coding downstream 105520 23232172 ~ 23232958 (+)
G41126 NA non-coding downstream 128290 23254942 ~ 23255527 (+)
itga7 itga7 other upstream 1114207 21950376 ~ 21992611 (+)
vgll4b vgll4 other upstream 1763107 21295102 ~ 21343711 (+)
G40353 rassf1,LOC102778369 other upstream 2958128 20148104 ~ 20148690 (+)
abhd14b abhd14b other upstream 3183269 19917889 ~ 19923549 (+)
cenps LOC103362653,LOC103137101,LOC103464519 other upstream 3247477 19851548 ~ 19859341 (+)
cbfa2t2 cbfa2t2 other downstream 608296 23734948 ~ 23771932 (+)
znfx1 NA other downstream 721395 23848047 ~ 23867512 (+)
bloc1s1 bloc1s1,LOC102796612 other downstream 1428873 24555525 ~ 24560318 (+)
slc12a5a LOC103355988 other downstream 2081504 25208156 ~ 25310553 (+)
slc16a1a slc16a1,LOC102208676,LOC102781600 other downstream 2555755 25682407 ~ 25690935 (+)

Expression


Co-expression Network