vstm2l (LOC103354992)


Basic Information

Item Value
gene id vstm2l
gene name LOC103354992
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 12127992 ~ 12151687 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039796506.1
tcatcatctcctcCCGCAGAGCCgagtggagcagcagcagcgtctCTCCCCTCCAGCTTCCAGCTTTATGTCTGTGAGGGCTGTTCAGCGCCGGCGGGGATATTTTACCGATGCTCTTCACCTAATGTGACACATTTTATTCAACTGCTTGAAACACCGGCTGAAGCAATGGGAGCCTTTGGAGGGATTTTACAGTACGTGGGACTTTATTTTCAACTTAACGCAGCTCTCAACGTCGGACACGGCGAGGTGGATAATCACGTCTCTGGAAATGCTCTCTTTACAGAGGTGCCACACGACATCACAACACAGAGCGGTGAGGATGTAGAGATGGCTTGTTCCTTCCGTGGGGCAGGCACTCCCTCCTACTCCCTGGAGATCCAGTGGTGGTACATCAAGGACCACAGAGACTGGCAAGAGAAGCCTGCCCAGATCACTAATAATGTTGTACCCCTGGAGAAAACTTCCAAAGATGCCACCAAAATTAGTGTGGTCAAAGTGGCCGGCAGCAACATCTCCCACAAGCTCCGTCTCTCCACTGTCAAACCGTCAGACCAGGGCACGTATGAGTGTCGTGTAATTGACTTCAGTGGCACCGTGGCGCAGCAACACCGCGTTCGCGCCTACCTCCAGGTGGAGCCTCAGAGGAGTCAGGGGTCGGATGGTGTCAAGCTGCAGGAGCCAAGGCAGAGGTCACAGGGGAACCACCAGCACCCCCAGCACCAGACAGAGGGCAGGGAACTGAAGAGGAGATCAGCTGGCAGCACCGCTGACTGTAATGAGAGCTGTATGCTTTAGAGTGGGCAGTCTGCCCATCTGTCTGCATGTTTATGACTTTTCTCTATCTCTAAAGAGGGACTGTCATCAACACACACGTTACCACAGAGTCGAGGCCTCAGACTTCACTGGACCCCTTTGTGTTTCACGGTTTGTTTGTCTATCTTTAATATTGCTGTTTGGATGCCGATGCTGTTTAATGCCAATAAAGGGCATGGTTTTATTGACTTTACATATGATTGTGttctttttgttgctttgttaTTTGTCTCTGTGCTTTTTCCTAGTGCATTGGGTTTATGTTTATCTGACAGTAAGGCTGTAATCACAGAGAgaacctttattttattttgtctgagCAGGACTCTTTCATTGGCTGAGCACCCTGAACTTCTCCTCACAAAGTTACTGTACACGGCAGTGGAGAGTCCAAATTATCATGgatataataaatattaaataggcGATATGGAGACAGAACAGACCATTTACTTTGCAATGTGCCAGTTCTACTGTCTACAAAACGTGCCAAAAGCTGCAGAATCTCAGTGTAAATGCTTTCTAAGGAACAAGAAATAAATTAAGCTTTTTTCATTTATCCGAGAACTTTATAAAGTGAATTGATTTAATCTTTGTTTAAACAGTATCTGTATTTAGCTTTCTAAACCATGACTAGAATGTTtgtcaaaatgaaaatgtatgccTTCATCACATCAAAataagtgtatatatataattatatatattatgtctatTCACACTTAGCACTGTAGACTTTTACtcttgtcattaaaataaagtttactCTGGGCTACTTAACTAATGACTCAAGAAACACAGCTAGGATGTTAATCGCTCTAAATTTTGTCATCATTTTCTCAACCACAATATAACTTTTTGTCTAAAATTTTATGGAGTTTGTGGTCTGAATCACATCCTCCTCTTGACTGTGTTTGTTCTAAGTGCTGCTGTTCTGTTAAAATACATTCATTTGAAATGACTTTGGTCTTTTTTTCAGTGATTCCGGTATACAGTGTTGCACTTTATTACTATTTTACTATACATGTTAGTGAGAGTGTGGGTAAGCCATGTCCTCTGTAAAGGAAATCTGTGGTTTGGTGGCACAAACTCACTGGTTGGTAGATCCGTATGTGTCCTTCATTTGAACTGTGTGGTAAAATCCCGTTTTATGGTGTTTAACTTAATACATGTTGTGAATGGGCAGAAATGACCTTTTATCTACTATAGGATGGTAAAAGGTTAGGTAACTTAGTTTTCTGTAATttagtatttcttttttcactccactacacatcctgtttaaaatgatattaTAGCTGTGTGTTGCAATATCATGTTGCGCAATATTATGTGTGTTAAAATATTATAGCTGTGTGTTGCTATACTGTGCCACATAA

Function

NR:

description
PREDICTED: V-set and transmembrane domain-containing protein 2-like protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039796506.1 True 2195 mRNA 0.42 4 12127992 12151687

Neighbor

gene id symbol gene type direction distance location
LOC120557464 tgif1,LOC103375645,LOC108230274,LOC106534656,LOC107382471 coding downstream 212905 11908096 ~ 11915087 (-)
LOC120557460 LOC104959439 coding downstream 229145 11881185 ~ 11898847 (-)
zgc:123305 LOC103368761,LOC104959439 coding downstream 247486 11868137 ~ 11880506 (-)
trim107 NA coding downstream 260594 11863536 ~ 11867398 (-)
tpra1 tpra1 coding downstream 265157 11855465 ~ 11862835 (-)
LOC120558143 LOC104936998 coding upstream 45656 12197343 ~ 12201057 (-)
LOC120558222 LOC104936998,LOC102790234 coding upstream 71768 12223455 ~ 12227890 (-)
LOC120558156 LOC103354990,LOC100702519,LOC102310094,LOC102789952,LOC102196994 coding upstream 101384 12253071 ~ 12260784 (-)
trnaq-uug NA coding upstream 180340 12332027 ~ 12332098 (-)
LOC120557556 LOC104937806,LOC103354984 coding upstream 288613 12440300 ~ 12446506 (-)
G37794 NA non-coding downstream 15988 12111104 ~ 12112004 (-)
G37679 LOC107098295,LOC108267514 non-coding downstream 154391 11870727 ~ 11973601 (-)
LOC120557710 NA non-coding downstream 347958 11763081 ~ 11780034 (-)
G37670 NA non-coding downstream 377619 11750032 ~ 11750373 (-)
LOC120557711 NA non-coding downstream 384542 11741570 ~ 11743450 (-)
G37812 krt18,LOC103386112,LOC107385534,LOC105931717 non-coding upstream 125184 12276871 ~ 12278670 (-)
G37813 NA non-coding upstream 132081 12283768 ~ 12286834 (-)
G37820 NA non-coding upstream 148546 12300233 ~ 12300493 (-)
G37822 NA non-coding upstream 171499 12323186 ~ 12373498 (-)
G37823 NA non-coding upstream 172792 12324479 ~ 12327427 (-)
G37799 tgm2,LOC103354993,LOC105931743,LOC107088490 other downstream 3540 12123445 ~ 12124452 (-)
dlgap4b LOC103354995,LOC104959427,LOC102311431,LOC102791764,LOC101471735,LOC103464946 other downstream 86992 11915867 ~ 12041000 (-)
LOC120557334 cytl1 other downstream 784839 11340758 ~ 11343153 (-)
G37432 LOC106915059,LOC106958204,LOC102221633,LOC103464975,LOC100700174,LOC101482873,LOC102210230 other downstream 1074907 11051299 ~ 11053085 (-)
LOC120557925 tmem233 other downstream 1139174 10983070 ~ 10988818 (-)
G37805 LOC104936998,LOC103354991 other upstream 64516 12216203 ~ 12217190 (-)
G37861 NA other upstream 341242 12492929 ~ 12496235 (-)
G37876 NA other upstream 431748 12583435 ~ 12584453 (-)
LOC120557659 acap3,LOC103354975,LOC101487998 other upstream 448476 12600163 ~ 12660717 (-)
camk2n1 LOC104938800,LOC101487137,LOC105931744,LOC100700351,LOC104958030 other upstream 545990 12697677 ~ 12700619 (-)

Expression


Co-expression Network