rab22a (rab22a)


Basic Information

Item Value
gene id rab22a
gene name rab22a
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 24909084 ~ 24921376 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039796536.1
TGTCACGTGACTTCTCCCCATAGTTCAAGATGGAGACTGCGCGAGCTTCACTGGTTGCTACTGTAGCTAGCTGTTTACAATAATCACAATATGGCAAATGCGACGTACTACGGGACATTTTAACGCTAATAACGAGAGTTATAACTTAACCTGAGATGCGCATTTAGCAGCTTTCGACAACAATGAAGTAAAGTTGTTTGTAAACATACAACACCTAAAGAATATTCAAGATAAAAGGAAACCACTGTCAATGGTCATCAACACGAACTCATTTTGAGTGAGAGGAGATCGATATGGCGCTCAGAGAGTTAAAAGTCTGTCTCCTGGGGGACACTGGCGTTGGGAAGTCGAGTATTGTTTGGAGATTTGTGGAGGACAGCTTTGACCCAAACATCAACCCAACAATTGGGGCATCCTTCATGACCAAGACAGTGCAATACCAAAACGAGCTGCACAAGTTCCTGATCTGGGACACGGCAGGACAAGAGCGGTTTCGTGCTCTGGCACCAATGTACTACAGAGGGTCAGCGGCAGCCATCATTGTTTATGACATTACGAAAGAGGAATCTTTCCAAACACTGAAGAACTGGGTGAAGGAGCTGCGCCAGCATGGTCCTCCTAATATAGTGGTCGCCATCGCTGGCAACAAGTGTGACCTGACAGACTCCAGGGAAGTGCCAGAGAAGGATGCCAAGGACTACGCTGACTCCATCCATGCCATATTTGTAGAAACCAGTGCCAAGAATGCCATTAACATCAACGAGGTGTTTATAGAGATAAGTAAGCGCATTCCCGTTGTCGACGCAGCAGGTGGAACTTCAGGAAAAGCTTTCAAACTCGGACGTCAGGCGTCAGAGTCCCGCAGGACGTGCTGCTGATGATGCCGGTGACTGTGCCCATATGACCTGTGACCTGACCTTTGCTTACCCTGTGTGTGCCCGGCCTGCTTCAGCTTACAGCCACCACACACCCTAAAACACACTGCCGTCTCTGATACCGGGGTGCAGCAATGCCACTTTGATGACGGGGGTGTCATGAAAATTGTTGGCATGAGAAATACTTACTGAGCCTTGACAATTGTCTGCATTAAAACATTGATGTGTAAGTGAAAGACCCCCATATATATTCATGAATTTAGAAACCATTTGTACTTACGTTACATATCTTTCAACCAAAACATGGACTGAAAACGGTTAAATTTCACCAAATTATTTCGATAGCACTGAAGTTTTTGCCTTTTGGGAGGTCTCTCCCCAAACATGTTTAACTTTGTGAAGGATCCATCTATACAGTTAATGTGCGGAATCACTTATTTATCAGAAGAGATGAAAGAGGTTATGTTCAAACAGTCATCAGTGTTTGTACCAATCATTAATCCCAATGTTTGCTTTCTCAAAGGATATTTGGAGAGATGTTGGTTATCAAAATCAAGCAAGACGGATTGTGCACACTACAGTTAAGTTTCATTGTGTGATTGCGGTTTTCATCAAAAAATATTCAAGGCAAAAACACCAAGTGGGTGTTTTGATGTAAATTCACAAAATCACACTGAAATGCGGAAATGAAAGGTGTGTGGGAGCCTACTTCCTTtacattaaaggaatagtttgatgttttggggaaatatgcttttttgtgttcttgcctagggtgaaattacaaTATTGATACCattctcatgtctgtatggtaaatattaGCATAACGACTGGAAACATGGGGAATCATTTAGCcatccaaaggtaacaaaatctgcctaccagcagctctcaagctcactaattaacacgttaTATCTGACAGAGCCAGGTTTTTACCCATTTCAaggttttatgctaagctaagctaaccagctgctggctgttgcCTTATATTTAATAGACAGATATGAGAATGGTATTGCTCTTCTTATCTAACGCTCTGCCAGAAAATGAATAGGTGTATTCCCCAAaacaaactattccttttaatTGTAAACTTTGGCTTCTAAGGATATTTTGATCGTCACTTACGCCACCGAGAAAGATaacaaattgttgtaaaataTTGTCAACGTGATGAGAATGACTGTGCAGTTCACATCTCCCAATGATAGGAATTTAATCAAGGCTTCAAGTTTATTATTATATGATAACAGTTCCAGCTGCTCACATTTGCTCCACACTTCCACTTGTAATTACTGAAAAGGTATTAACTGAATCTTGTGTATGAAGTTTCCTGTAGTGTGTACAGTGGTTTCACAATATTACTTTATCTTTATTTCTCTCTAATCTTATTTTCACTGGCGAGCCTGCCTGTCCTCAACCCTTTACTGCTACTTCAAAACAGTTTtactgattgttttttttgccagatTCTGTAATTGTCCCATAAACATTTTtcatctcttctttttttgcacATAATCAGCAGTGGCTCGCACATGCAATGTTTTACTACGTGGCCTGCAATGAAAACACTGAGATCTGGAAACTAGACTTCGTTAAGAGGAAACTCAGATTTTGGAGCTTAAATCTCCCCTCAGCAGAAGGTTATAAATGCAGAATCAGACGTGGCGCTGTGTCGACATGCTGACCCCTTAATGAACCTTGGTCTCCATTCTGCTCTGAATTACTGTGCGTGCTTTGTTCCAAGGTCTGCCTTCTGATTTTCCTTCCTCCAAACTTCTTTTGCCTCATTCCTTGTATGTccagcttttattttgttttaaacaaatGTAGTACACTATACAGCAGCTTTCACAGAGCTCTATCATCCCCTACTACATTCACTCTGTGATGCTATGTTACAGTAGTTTCATTTATCTCTTATATTGGCCTAATTGAGGTCAGTTGACTCATGAGCCCCCACAGACTTATTAATTCTTTGTAATTTCATGCTTGTCTGTATCTCTTGAGCCCTTTTAGCCCCAAAACCTCTTTTCAAAGTTGCCAAAAGAATATAGATGTGGGCTTAATCAGACTGCATTTCCACATTTATAAATCTGGAGTGTGTGCTCTTCTGTCAGCGCAAGCCACTTTATTTGCCTTTTTAAGCATCTTAAATAGCTGTTATTGATGGGTTGTGTGCAAAGCAGTGCTGCCTTTTTTCAGGATTTTCCTATGGAGTGCAATAGTTATTAtgacaaaggtaaaatgtgacCTAATCTAAGAAAACGGATACAGAGTGAAAATTTTCACACAGCAGAGCACACACTCGTGCAAAAAACATGATCTCATTCCAGCAGTCTCAAACATGATAAGTTTATATTGACCTAATTTTATGCTTATTTGATGACAGTTTTGCTCAGACATAGTTGATCCAATGAGCAGTGTGATGGGACTGACCAAATCTCTTGAAAACCAGAGTGGCATTTTAGGTCAAAGCTTAAACTTAAAGAGAATCCCTGTGGTACTTTGAAAGCTGCACTTTGACTATTTGTATTAATTAATTGGCCCTTATTACTAACTATCAATCTGTCTGCAGTCTGTTCGTATCTGTGTGATATCACTTGATGAAACATTCTTGTACAGGTATCAGACTTCTTAACATCCCTGAATGTTATTTTAGGTTTTGACTGTTTGCTCAGTTATTGCTACGAAAAACCTGGTGCCATATAATGTCAACACCATTTTACTAAACCAAGCTTAATTAaccttttcttattttattgtcAATGTATAATAATGATTTAAATTGCTAATCACGTTAATGCTTAAAAATATTTGAAGTTTGATAATGACACatgttttttccccttatttGGAAACAGGAGGCATTAATAGAAATTGTATGCCAGTTTTTGCTTTGAAAAATACCAATAGTCTTGGGCTGGCCCTGGGAATGTGTTGAATctatattatgtatatttttagtgTAGATACATACCATCCAATTGCACATAAATCAATGACTATGTTCTATTCTAAGCCAGTTGTGTGACCACAATAGAATTGTGCACGGTTTGCAGTAATTCCATCAGCATTGTAGTTACCATATTTAGCTTTTTACTATGTTTCATATTGATTGTAACAAATGCCTGAAAACACTTGTTTGCAGTGTATTTCCAAATGTGTAAAAAGGGAATGGTCAATTTGTTTACTAATAAAAGAttgacaaa

Function

symbol description
rab22a Predicted to enable GTPase activity. Predicted to be involved in endocytosis and intracellular protein transport. Predicted to be active in early endosome. Orthologous to human RAB22A (RAB22A, member RAS oncogene family).

NR:

description
Ras-related protein Rab-22A

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07891 RAB22; Ras-related protein Rab-22

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039796536.1 True 4099 mRNA 0.39 7 24909084 24921376

Neighbor

gene id symbol gene type direction distance location
LOC120556805 bcdin3d,LOC102799648 coding upstream 17670 24888607 ~ 24891414 (+)
cers5 cers5 coding upstream 23055 24866174 ~ 24886029 (+)
LOC120557580 gpd1,LOC102799081 coding upstream 44990 24859261 ~ 24864094 (+)
smarcd1 smarcd1 coding upstream 50627 24827806 ~ 24858457 (+)
asic1b asic1,LOC104953473,LOC102798299 coding upstream 86771 24623492 ~ 24822313 (+)
LOC120557917 vapb,LOC101078863,LOC108231687,LOC103355448 coding downstream 2463 24923839 ~ 24946743 (+)
LOC120558032 NA coding downstream 193542 25114918 ~ 25120366 (+)
capza1a LOC104945687,LOC106582739 coding downstream 402018 25323394 ~ 25329667 (+)
mov10a LOC103356046,LOC100704454,LOC101471942,LOC102210509,LOC102290565 coding downstream 409772 25331148 ~ 25345776 (+)
tafa3a fam19a3,LOC106517667,LOC104918365,LOC102289964,LOC101471348 coding downstream 484104 25405480 ~ 25523601 (+)
G41375 itch,LOC104964281,LOC107681287,LOC101070007,LOC108231686,LOC103355463 non-coding upstream 366931 24540909 ~ 24542153 (+)
G41368 NA non-coding upstream 385477 24521599 ~ 24523607 (+)
LOC120557758 NA non-coding upstream 455065 24452621 ~ 24454019 (+)
G41360 NA non-coding upstream 457515 24436382 ~ 24451569 (+)
G41354 NA non-coding upstream 487201 24419201 ~ 24421883 (+)
G41441 NA non-coding downstream 260 24921636 ~ 24921851 (+)
G41518 NA non-coding downstream 101082 25022458 ~ 25022749 (+)
LOC120557911 NA non-coding downstream 131460 25052836 ~ 25065136 (+)
G41539 NA non-coding downstream 164038 25085414 ~ 25085842 (+)
LOC120558031 NA non-coding downstream 177911 25099287 ~ 25113176 (+)
bloc1s1 bloc1s1,LOC102796612 other upstream 348766 24555525 ~ 24560318 (+)
znfx1 NA other upstream 1041572 23848047 ~ 23867512 (+)
cbfa2t2 cbfa2t2 other upstream 1137152 23734948 ~ 23771932 (+)
itga7 itga7 other upstream 2916473 21950376 ~ 21992611 (+)
vgll4b vgll4 other upstream 3565373 21295102 ~ 21343711 (+)
slc12a5a LOC103355988 other downstream 286780 25208156 ~ 25310553 (+)
slc16a1a slc16a1,LOC102208676,LOC102781600 other downstream 761031 25682407 ~ 25690935 (+)
LOC120558082 kcna10,LOC104941363 other downstream 845716 25767092 ~ 25872919 (+)
LOC120558088 LOC104941431 other downstream 983393 25904769 ~ 25907738 (+)
G41825 NA other downstream 1347226 26268602 ~ 26273315 (+)

Expression


Co-expression Network