LOC120556810 (nxph4,LOC103359783)


Basic Information

Item Value
gene id LOC120556810
gene name nxph4,LOC103359783
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 22860054 ~ 22906187 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039796538.1
CCAGTCAGTATCCCAAAAACACAAGAAGCGCTGGCGATCTTCAATGAAATCCCCTCTTTGCTTCCGCCCTCCAAACTGACTTGGTCTCCGCGCAAACTTCCAGCAAACGTCCAGCATGAGCGGAAACAAACACCATGGATGTGCCACATGAGGCGGACCAGACCCACTGAAGCCACCCCTCAAAGTTTGCCTGTAGAGACCCCCGTGACACTGACTAAACAAGCAGACAACTTTACGCGTTTTTCTGCTTTCCTAATACTTTTTACTTGTCGCTTGATTGTTGGGATTGCTTGGATTCCGCGGTGTTTCTTTTATATGTTCAGCCGCGGAGACGTGTAGTTTTTCGGGGTGGTCCGCTACAAGGAAGGTGACATGCAGGTTCTCGGTTGGACCATAGTTCTCCTGTGCCAGTGGATCCTACGGAAGgtCCAAGGGTTGGAGAAGCAGGTGGAGTTCTCAGACCTGGGCCCAGTGGGGTCTGTGATGAAGACTCTTCCATATGGCATGGGTGGAGGCACAGTGGGAGGAACAACAGGGGGGGTTGTTAAGCCTCCATACCAAACACGTATCTTCTCCACTTCCATCGACCAGACACCCATGAAATCCAAGCCACCCACCTACAGTTTCTTCAACCCATACGACTCGGCCCGGAACCAGTCCCTGCTCCTTGACCAGACAGGATACCGCTCTAAGCGCAAACCCTCACTAAAGACAGCCATGAAGACCAAGAAGATCTTCGGCTGGGGAGACTTCTACTTCAACGTCAAGACCCTTAAATTCAGCTTGTTGGTGACAGGGAAGATTGTGGACCACATCAATGGGACGTTCACCGTTTACTTCCGCCACAACTCATCCAGCCTGGGGAACGTGTCGGTCAGTATCGTGCCGCCGACCAAAGTGGTGGAGTTTGAGGtcctccagcagcagcatctGCACCCTCACACTCAGCAGGACGTCCAGATCCAGGAGACCCAGCAGTCCACCATCGACCCTAAAGAGACAAAGACCTTTAACTGTCGGGTGGAGTATGAGAAAACCAACAGATCCAAGAAGCCCAAACCCTGCCTGTATGATCCTTCTCAGACCTGCTTCACAGAGCACACCCAGTCTCACGCTGCCTGGCTCTGTGCCAAGCCCTTCAAGGTGATCTGCATCTTCATCTCTTTCTTCAGCATTGATTACAAGCTGGTTCAAAAAGTGTGTCCGGACTACAACTTCCAAAGTGAGCACCCTTACTTGGGATAAGTAAGTGAGACTAAACtgcaaagagagaaaagaaaaagacaatgttaatgatgacaatgatgaatataatgataatgatggAAATCATAGTCATATTGATTACGATGAAGAAGCAGGGGACAGTTTTTTGCCTCTTAAACCGCTGTGAATGGGGTTTTAAATCAAGTATAATCAGAGGTATGGATGGTTAGGATATGGCTGAGTTCTCTGAATATTTTCCAACTTTGTATTTGTTAACTTCTGttttattagctttttttttctgtaaataatGTACTCAACCTCAGCACACTTATTGTTTTTTAGAGATTTGTTTATCAGTGTTATTACTTTTTGCAGTTGGAGCATTTTGTTGAAAACAGCTGGAATCAGTATTATGCCCTCCGAGTACCAAGGGAGCCTCTGAGTCGGCTGTGCTGTGCCATCACTGTATGGCGGACGTAATGTTATGGTAGACTGACTGTTAATCATCCTCTCAGCTCCACGTTTCCCTGGATATAAGAAAGTTATATGTATGAGAAATGCTATGCTGGATATgcatacaatatactgtatgaataAGCACATTAAAATCTCTTAAACTGTC

Function

symbol description
nxph4 Predicted to enable signaling receptor binding activity. Predicted to be located in extracellular region.

NR:

description
PREDICTED: neurexophilin-2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039796538.1 True 1831 mRNA 0.47 2 22860054 22906187

Neighbor

gene id symbol gene type direction distance location
LOC120557968 stac3 coding upstream 90022 22761471 ~ 22770032 (+)
LOC120557262 r3hdm2 coding upstream 106541 22676522 ~ 22753513 (+)
arhgap9 arhgap9 coding upstream 305452 22507327 ~ 22554602 (+)
ddit3 ddit3 coding upstream 372486 22483196 ~ 22487568 (+)
dctn2 dctn2 coding upstream 382789 22461491 ~ 22477265 (+)
shmt2 LOC103359782,LOC102307393 coding downstream 3249 22909436 ~ 22935567 (+)
LOC120556778 arhgap40 coding downstream 200631 23106818 ~ 23126652 (+)
slc32a1 slc32a1,LOC102787607,LOC100693191 coding downstream 242888 23149075 ~ 23153670 (+)
LOC120557748 LOC103355891,LOC100710082 coding downstream 276262 23182449 ~ 23213859 (+)
ipo9 ipo9 coding downstream 328140 23234327 ~ 23254218 (+)
LOC120556826 NA non-coding upstream 35898 22776241 ~ 22824156 (+)
G41041 gli1 non-coding upstream 263539 22595427 ~ 22596515 (+)
G41040 NA non-coding upstream 266971 22591672 ~ 22593083 (+)
G41021 NA non-coding upstream 305209 22554617 ~ 22554845 (+)
G40948 NA non-coding upstream 434933 22389178 ~ 22425121 (+)
G41092 LOC104950336 non-coding downstream 51941 22958128 ~ 22964132 (+)
G41099 ppp1r16b non-coding downstream 105295 23011482 ~ 23018265 (+)
G41112 NA non-coding downstream 253099 23159286 ~ 23161818 (+)
G41114 LOC104933616,LOC107385352,LOC103355892,LOC103464385 non-coding downstream 257342 23163529 ~ 23172306 (+)
G41118 NA non-coding downstream 307971 23214158 ~ 23215795 (+)
itga7 itga7 other upstream 867443 21950376 ~ 21992611 (+)
vgll4b vgll4 other upstream 1516343 21295102 ~ 21343711 (+)
G40353 rassf1,LOC102778369 other upstream 2711364 20148104 ~ 20148690 (+)
abhd14b abhd14b other upstream 2936505 19917889 ~ 19923549 (+)
cenps LOC103362653,LOC103137101,LOC103464519 other upstream 3000713 19851548 ~ 19859341 (+)
cbfa2t2 cbfa2t2 other downstream 828761 23734948 ~ 23771932 (+)
znfx1 NA other downstream 941860 23848047 ~ 23867512 (+)
bloc1s1 bloc1s1,LOC102796612 other downstream 1649338 24555525 ~ 24560318 (+)
slc12a5a LOC103355988 other downstream 2301969 25208156 ~ 25310553 (+)
slc16a1a slc16a1,LOC102208676,LOC102781600 other downstream 2776220 25682407 ~ 25690935 (+)

Expression


Co-expression Network