usp4 (usp4,LOC102796025)


Basic Information

Item Value
gene id usp4
gene name usp4,LOC102796025
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 16566701 ~ 16578215 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039796552.1
GAACGTTTCCCATGAGCAGGCTCAGAAGCTCGCCCAAGTGCGCGGCCTCATCCATTCGCGCGTTCACGATACCGGCAGACTCTCTGCATGATGGCCGAGGGAGGCGGACCCGAGCCGGGTGGCGCGGCAGACTCCGACTCTGAGCCGGTAGCCGCAGAAATGCCAACCCCTTCAACCGAAAATCAAAAACAGACTATTGGGTCACTATTGAAAACAACTCTAAGGAAGGGCGACGAATGGTATCTAATAGACAGCCGGTGGTTCAAACAATGGAAGAAGTATGTTGGATTTGACAGCTGGGACATGTACAATGTTGGAGAACGTAGCCTCTATCCAGGACCAATTGATAACTCTGGGCTGTTCTCAGACCAGGAGACTCAAGCCCTGAAAGAGCACCTTATAGATGAGCTGGACTATGTCCTTGTACCCACTGAGGCATGGAATAAACTTGTGAGCTGGTACGGCTGCCTTGAGGGCCAGAGATCCATTGTCAGGAAGGTTGTTGAGCATGGCATGTTTGTCAAGCACTGTAAGGTGGAGGTCTATTTGCTGGAGCTGAACTTGTGTGAGAACGACAACATGGACAATGTTGTCACGCGTCATTTCAGTAAAGCTGATACTATAGATACTATAGAGAAGGAGATGAGGACGCTGTTCAATATCCCATCAGAGAAGGAGACACGGCTCTGGAACAAATACATGAGCAACACCTACGAACAGCTGAACAAGCCAGACAGCACCGTACAGGATGCTGGTCTCTTCCAGGGGCAGGTGCTTGTTATTGAACGGAAGAATGAGGATGGCACGTGGCCCAGACAAGCTTCCCATCCCAAATCCAGTACAACCCCATCCAGGAATTTCACTACCTCCCCAAAACTCTCCTCCAACTCAACAGCCAGTATCTCTTCAACAGTAACTAACGGAGACAGCAGCTGTAGCCCTGGCTACACACTTAACAACAGCACCTCCTCTGGCAACAGATTGGGGGGCTACAATTCATACAGCTCCTCCTACAACTACAGAGAGTCGCAGTCACAGCCTGGCCTGTGTGGTCTCAGTAATTTGGGCAACACATGCTTCATGAACTCTGCCCTCcagTGCCTGAGCAATGCATCTCCACTCACAGAGTACTTCCTCAATGACCAGTATGAGGCAGAGATTAACCGAGAGAATCCCCTGGGAATGAGGGGCGAGATTGCAGAGGCCTATGCAGATCTAGTAAAGCAGATGTGGCTGAGCCGCAGCAGCTATGTGGCCCCACGTACTTTCAAGACCCAGGTTGGACGTTTTGCCCCCCAGTTTTCAGGCTACCAGCAGCAGGACTCGCAGGAGCTGTTGGCCTTCCTGCTCGACGGGCTCCATGAAGATCTGAACCGCGTCAAAAAGAAGCCTTATCTGGCCCTGAGGGATGCTGAGGGCCGTCCAGACGAGATTGTTGCAAAGGAAGCTTGGACGAACCACCGCTTGCGCAATGACTCGATTATCGTTGATATTTTCCACGGCCTCTTCAAATCCACTTTGGTGTGCCCAGAGTGCTCCAAGGTGTCTGTAACCTTTGACCCATTCTGCTACCTCACACTGCCTCTGCCCATGAAGAAGGACCGTACTATGGAGGTTTTCCTGGTGCGATCAGACCCTGAGTCGAGACCCACACAGTATCGAGTCGTGGTCCCAAAACTGGGTACGGTGACAGACCTGTGCAGCGCCTTGTCCAAACTCTGTGGATTCCCTCCAGAAAATATGGTGGTGGCTGACGTTTACAATCATAGGTTCCATAAAATCTACAGACGGGATGATGGCCTCAACCAAATAATGGAAAAAGATGACATCTTTGTATATGAGGTACAGGAGGAGGACAGTGAGCGGATGAACCTGCCTGTGTATTTCAGGGAGCGCCACTCCAAGCATGTCGGAAGTTCCACGAGCACCATGCTGTTTGGCCAGCCTTTACTCCTCAGCGTGCCCAGACACAACCTCGTAGCAGACATCCTTTACGACAAGATCCTAGAGAAAATTGGGCGCTATGTAAAACAATCCCAGGgccctcataatgaaagcagagcctcagcctcagcctcagcctcagcctcagcctcatcctcatcctcatcctcatcctctgCCTCAGCCTCAGCGACCGTCGCCAGCTGCAGCCAAGCTCCTGAATGTTCCACAGCATCTAGTCTCAGTGCCAGCCTGGGTGGCTGTGGCAGCCCCCTGTCAGACGGGGCCTCGTGCAGTGCCAGCTTCAGTAACGGCAGCAACCACTCAGGGACATGCAACAAAACTAATGGGCTATATGATGGTGAGGAGGAAGCCATGGACCACCAGGGGAGTCCAGAGCCAGAGAATGGCCAGtctgaagaggaggaagaggagacctCTGACTTGGAAAATGGGTCTAAGGGAGCCATGCCCAAGCAGTCTTCGCCAGCCAAACTCTTCACTTTCAGCATAGTCAACTCTTACGGAACAGCTAACATCAGCCCGCTGCCCTGTGATGGAAATGTCCTCAAACTTAATCcgCATTCAACGGTGGCGATTGACTGGGACACAGAGTCAAAGAAACTGTGTTATGATGAACAGGAAGCAGAGGCCTATGAGAAGCATGAGAGCATGCTCCAGCCCCAAAAGAAGAAAGCCACTGTGGCTCTGAGGGAATGCATTGAGCTCTTTACCACCATGGAGACACTTGGAGAACACGATCCATGGTATTGTCCAACATGTAAGAAACACCAACAGGCCACAAAAAAGTTTGACTTGTGGTCGCTGCCTCGAGTTCTGGTAGTTCATCTAAAGCGATTTTCCTACAACCGGTGTTGGAGGGACAAGCTGGACACGGTGGTGGACTTTCCCATCAGGGATCTGAACATGTCCGAGTTTGTGTGTGACCCGAAGGCCGGCCCCTACATATACGACCTTGTTGCCGTGTCAAACCACTACGGAGGAATGGGAGGGGGTCACTACACCGGTTATGGCAAGAATAAAGTGGACGGAAAGTGGTATTACTTTGATGACAGCAGTGTCTCCTCTGCCTCAGAGGACCAGATTGTGACTAAAGCAGCCTATGTGCTGTTCTATCAGCGCAGAGACGAGGAAGCCCCCTCCAAACCTCAGCCTTCGGCCTCGCTGGGAGGAGCCCCAGAAGCAGTCGATGACCACATGGACACAAACTGAGGAGCCCTGACGCGAAGGGAAACGCACTGAAACACATACAGCAAATAGAGACACTCGGACGCACACACAAAGCTCCTTTAGTGACAGAGGACTCCACAGACTTAACATTATTAACCCTACCTTCCCCGTATTTTATTTGGTTTCTGTCTCGTATGTTGTCAACTAGAGCCAACAGCCTTGTCAGAAGAGTGACCTGAGAGACTTCCTCCCTGCAGCGGGTGGCCTACTGATTTCTGATCCTAATTTACTAGTCTGGAACTAAAGAGGAGTCTAAATGGATATAGATCCTCTCACTGGATGAACAGAATGTTAGAAGTGCCCTCAAATGCGTAGATAAACAAATGTTtcagaaatatattaaaaaaaaaaaaaaaaaa

Function

symbol description
usp4 Predicted to enable thiol-dependent deubiquitinase. Acts upstream of or within convergent extension; negative regulation of toll-like receptor signaling pathway; and protein deubiquitination. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Orthologous to human USP4 (ubiquitin specific peptidase 4).

NR:

description
ubiquitin carboxyl-terminal hydrolase 4-like isoform X1

GO:

id name namespace
GO:0016579 protein deubiquitination biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0004221 obsolete ubiquitin thiolesterase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039796552.1 True 3554 mRNA 0.51 22 16566701 16578215

Neighbor

gene id symbol gene type direction distance location
emc3 emc3,LOC101173295,LOC101079695 coding upstream 306 16562865 ~ 16566395 (+)
arpc4 arpc4,LOC103358720,LOC100696600,LOC103385929,LOC107721188 coding upstream 399563 16161960 ~ 16167138 (+)
mustn1a mustn1 coding upstream 525488 16039813 ~ 16041213 (+)
rft1 rft1 coding upstream 527427 16035974 ~ 16039274 (+)
prkcda prkcd,LOC104933455 coding upstream 531739 16016979 ~ 16034962 (+)
fancd2 fancd2 coding downstream 6197 16584412 ~ 16605415 (+)
tex264a tex264,LOC102797020 coding downstream 28236 16606451 ~ 16681516 (+)
grm2a LOC103368479 coding downstream 105593 16683808 ~ 16716227 (+)
parp3 parp3 coding downstream 140065 16718280 ~ 16722817 (+)
gpr61l LOC104930496,LOC103368477,LOC104957521,LOC100694581 coding downstream 145944 16724159 ~ 16730016 (+)
G39134 NA non-coding upstream 10496 16552684 ~ 16556205 (+)
G39113 NA non-coding upstream 56516 16503438 ~ 16510185 (+)
G39076 LOC104930492,LOC103358728,LOC102300171,LOC101465142 non-coding upstream 314976 16235014 ~ 16251725 (+)
G39052 LOC101067125,LOC103386161,LOC103365890 non-coding upstream 370917 16195379 ~ 16195784 (+)
G38966 NA non-coding upstream 581605 15984624 ~ 15985096 (+)
G39143 NA non-coding downstream 870 16579085 ~ 16579722 (+)
G39195 NA non-coding downstream 204196 16782411 ~ 16782618 (+)
G39196 NA non-coding downstream 206533 16784748 ~ 16785065 (+)
G39197 NA non-coding downstream 207616 16785831 ~ 16786051 (+)
G39210 NA non-coding downstream 240531 16818746 ~ 16823256 (+)
G39116 NA other upstream 23121 16517536 ~ 16543580 (+)
G39104 LOC103385912,LOC104930488,LOC103358732,LOC101079922 other upstream 131472 16433238 ~ 16435229 (+)
LOC120557902 rab7,rab7a,LOC102230535,LOC106583206,LOC105017191,LOC101061812 other upstream 408339 16149125 ~ 16158362 (+)
eefsec eefsec,LOC102787825 other upstream 506371 16049678 ~ 16060330 (+)
ccdc174 ccdc174 other upstream 592464 15965402 ~ 15974237 (+)
LOC120556687 LOC103362900,LOC104950925,LOC102306361,LOC100693144,LOC103362894 other downstream 386402 16964617 ~ 17046696 (+)
G39351 NA other downstream 533898 17112113 ~ 17119890 (+)
srsf3b srsf3,LOC104948713,LOC103465186,LOC102226051,LOC103150674 other downstream 614936 17193151 ~ 17198217 (+)
LOC120557637 minos1,LOC103357934 other downstream 793268 17371483 ~ 17377560 (+)
G39581 LOC104949003,LOC103357913 other downstream 1029715 17607930 ~ 17609216 (+)

Expression


Co-expression Network