emc3 (emc3,LOC101173295,LOC101079695)


Basic Information

Item Value
gene id emc3
gene name emc3,LOC101173295,LOC101079695
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 16562865 ~ 16566395 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039796553.1
CATCGGCGCGGGGTGGCGCTGCAGTCCCAGTGAGATGCGGATGAGCTGCAGAAGGAGAAATCTGCTCTCATCCTCCCTGGAGTCATCACTACAGCGCGATGACCGCGACAGTGGATGCAAACTGTTAAATGTTGTTTGATTTAATAAACTACCTCACATAGCGTATGATTTGGGTCTATCGTAGTtggaaaaaaacactgcaaGTGGTTGCCACTGCGCTAAGACGACTCGCCAGCTTCAGCCAACTGTGACGGGCATCAGGGAagaagttaagctaacgttaccaggCTGTATGGCTGAGCCGGAGCTTCTGCTGGACTCCAATATTCGACTTTGGGTGGTGTTACCCATTGTCTTCATCACCTTTCTTGTCGGGGTGATTCGGCATTATGTATCCATTCTTCTTCAAAGTGACAAGAAGTTGACGTTAGAACAGGTTTCTGACAGCCAGGTTCTTATTCGGAGCAGAATCCTCAGAGAAAATGGAAAATACATTCCCAAACAGTCTTTTTTGATGAGGAAGTTCTACTTCAATAATCAAGAAGATGGATTTTTCAAGAAGACCAAAAGAAAGGTCGTTCCACCCTCTCCAATGACAGATCCCAGCATGCTGACAGACATGATGAAAGGAAATGTCACCAATGTGCTTCCCATGATCCTCATTGGAGGCTGGATCAACTGGACCTTTTCAGGATTTGTAACAACTAAGGTTCCCTTCCCTCTTACTCTGCGCTTCAAGCCCATGCTTCAGCAAGGAATAGAGCTGCTCTCACTGGATGCCTCCTGGGTGAGTTCGGCGTCATGGTATTTCCTGAATGTGTTTGGACTACGAAGCATGTACTCATTAATTCTAGGCCAAGATAATGGTGCTGATCAGTCAAGGATCATGCAGGAGCAGATGAGTGGTGCTGCCATGGCCATGCCTGCAGATACAAATAAAGCTTTCAAGGCTGAGTGGGAGGCACTGGAACTGACAGACCATCAGTGGGCGCTGGAGAGCGTAGAGGAGGATCTGATGAGCAGAGAGCTGGACCTCGATGGCATGTTTAGCAAGGAGCTGCCAAGTGGTATCTTCTGATGGCCTGGTCACTTCTACTTGGAACCTTCAATTAGAATTTTGATCATTGCAGGGATTTGTTTTTGGTTGAAGCAACAGAGATTGGACAAATTTCTTCATGTTATGCAAAGTTTACATTCACTTATTTGTCGTCCTTGTCTTTTTACAGTGAATGTTACATTTCCTTTCCTGCCCATAAAATATCTGAAATTACTTAAATTACACTGGTTCTGCTGCTGTCTCATGCATATTAGAaatcattactttatttcaCCTTTTGAGACAAGGAGATGTTTGGGAGAAATTGAGTGGCTTTTAGCTTATTGGAATGCATTAGCTTGTAACCGTATGCCATTAGTTAAAAGAATGTGAACTTCTAGTGCTAGTGCTTCTTTTTTCTTATGTCATACACAGCTAGATTAGCTGTCTCAATTTTATGTATCCTCATGTTTAAACAATAGGACACTATCATTTTACAAGTCTGAATTATGTTTAATTATACTTTAACACTCTTTAATGACTCTTTTGTTAGATCAAATATAGATCAGCTGTCCTGTCTCAGCTGCCTAAAGTTGATCGATTAGCTGTTGGCAGGAATGTTTGTGTGATTGAGATATTGTGTTTTTGAAGTATGTAGACGGTTCATTTTGTAATGTAATTCTTCTGTGTTTTGTACAGCATAAATCCTGTTTTGACAATA

Function

symbol description
emc3 Predicted to contribute to membrane insertase activity. Acts upstream of or within photoreceptor cell maintenance and retina development in camera-type eye. Located in Golgi apparatus and trans-Golgi network transport vesicle. Is expressed in several structures, including brain; digestive system; eye; immature eye; and yolk syncytial layer. Orthologous to human EMC3 (ER membrane protein complex subunit 3).

NR:

description
ER membrane protein complex subunit 3

GO:

id name namespace
GO:0045494 photoreceptor cell maintenance biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0030140 trans-Golgi network transport vesicle cellular_component
GO:0016020 membrane cellular_component

KEGG:

id description
K23564 EMC3, TMEM111; ER membrane protein complex subunit 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039796553.1 True 1757 mRNA 0.42 9 16562865 16566395

Neighbor

gene id symbol gene type direction distance location
arpc4 arpc4,LOC103358720,LOC100696600,LOC103385929,LOC107721188 coding upstream 395727 16161960 ~ 16167138 (+)
mustn1a mustn1 coding upstream 521652 16039813 ~ 16041213 (+)
rft1 rft1 coding upstream 523591 16035974 ~ 16039274 (+)
prkcda prkcd,LOC104933455 coding upstream 527903 16016979 ~ 16034962 (+)
LOC120558102 LOC104943766 coding upstream 551359 15991734 ~ 16011506 (+)
usp4 usp4,LOC102796025 coding downstream 306 16566701 ~ 16578215 (+)
fancd2 fancd2 coding downstream 18017 16584412 ~ 16605415 (+)
tex264a tex264,LOC102797020 coding downstream 40056 16606451 ~ 16681516 (+)
grm2a LOC103368479 coding downstream 117413 16683808 ~ 16716227 (+)
parp3 parp3 coding downstream 151885 16718280 ~ 16722817 (+)
G39134 NA non-coding upstream 6660 16552684 ~ 16556205 (+)
G39113 NA non-coding upstream 52680 16503438 ~ 16510185 (+)
G39076 LOC104930492,LOC103358728,LOC102300171,LOC101465142 non-coding upstream 311140 16235014 ~ 16251725 (+)
G39052 LOC101067125,LOC103386161,LOC103365890 non-coding upstream 367081 16195379 ~ 16195784 (+)
G38966 NA non-coding upstream 577769 15984624 ~ 15985096 (+)
G39143 NA non-coding downstream 12690 16579085 ~ 16579722 (+)
G39195 NA non-coding downstream 216016 16782411 ~ 16782618 (+)
G39196 NA non-coding downstream 218353 16784748 ~ 16785065 (+)
G39197 NA non-coding downstream 219436 16785831 ~ 16786051 (+)
G39210 NA non-coding downstream 252351 16818746 ~ 16823256 (+)
G39116 NA other upstream 19285 16517536 ~ 16543580 (+)
G39104 LOC103385912,LOC104930488,LOC103358732,LOC101079922 other upstream 127636 16433238 ~ 16435229 (+)
LOC120557902 rab7,rab7a,LOC102230535,LOC106583206,LOC105017191,LOC101061812 other upstream 404503 16149125 ~ 16158362 (+)
eefsec eefsec,LOC102787825 other upstream 502535 16049678 ~ 16060330 (+)
ccdc174 ccdc174 other upstream 588628 15965402 ~ 15974237 (+)
LOC120556687 LOC103362900,LOC104950925,LOC102306361,LOC100693144,LOC103362894 other downstream 398222 16964617 ~ 17046696 (+)
G39351 NA other downstream 545718 17112113 ~ 17119890 (+)
srsf3b srsf3,LOC104948713,LOC103465186,LOC102226051,LOC103150674 other downstream 626756 17193151 ~ 17198217 (+)
LOC120557637 minos1,LOC103357934 other downstream 805088 17371483 ~ 17377560 (+)
G39581 LOC104949003,LOC103357913 other downstream 1041535 17607930 ~ 17609216 (+)

Expression


Co-expression Network