optc (LOC104947866)


Basic Information

Item Value
gene id optc
gene name LOC104947866
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 4472164 ~ 4479342 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039796621.1
ATAATGATGCATTGTCCACAGGCTGCTCTGAAGCCGAGTGAACAACAGGGGCCCGCCGGGACTCTGGGACCAGTCTGAGAGCGCCCAGGGGATGAAGCAGCAAATAATAGCAACAGGATTAGAAAAACTGAAGGTTGTGGAGTCTGCAGGAGCATACAGCGGAAACAAAGCACAGGCTGTCCCCGTGTTTGAGTTGAGGATGTCTCTGCAGTCTCTGATGATGGCCCTTGCCATGGTCCTGGTCTTCCTGGGCCCCCACGCTAGCATGGCAGCCCCTCCAGGTGAGCCAGATGATGAGGCTTTTGACCTCGAAAACTACGACCTGAACAGTGAAATGGACTGGGAGAACCTGGACACCAACATTTATGGAGACAGTTATGATTACGACGACTTGGACCAAGAgATTGAGGTGGGCACGGTGGCACCAGAAACCCCTCCACCAGCCAACCAGCCCACAGCTGAACACTACGAGGAGGAGTTGACCCTGCCCACCCTGCCTCCAGCTCCCGTCACCCTGGACTTCAAGGGACCAGGTCTCTTTGGCCCTGACACCGGCCTGGGTATGCCTACCtgcctactgtgtgtgtgtattggtggTAGTGTGTACTGTGATGACATGGGCCTGGATCAGATCCCACCCCTGCCCAAAGAAACCACGCATTTGTATGGCCGCTTCAACAAGATCCGACATGTCAAGAACACAGACTTTATCAACCTCAATAAACTCCAGTCCATTGATCTAACAGGGAACCAGATCTCAGGGATGGATGAGGATGTGTTTCGCTCTCTGCCGCAGCTCAAGGAGTTACTGCTGGCTGACAACAACCTGCAGGTCATGCCTGAACTGCCAGTCACCATGAAATTCATTGATCTACGTAACAACAGGTTGATCAGTCGTGGGGTACATCCCGAAGGATTCAAgGATATGAGCCAGCTGGAATTCCTCTATCTGTCCAACAATAACCTGGATTACATTCCTACACCTCTACCACTGGGCTTGAGAGTGTTACACCTTCAGAATAACAACATTCAGTCTCTGCACGAGGACACCTTTTGTAACAGTCATGATCTCAACTTCATCCGCCGTAACCTGGAGGATATCCGTCTGGATGGCAACCCGCTGAACATCAACCTGTTTGCCCAGGCCTACGTCTGCCTGCCACGCCTGCCTGTAGGGAGTCACTGACAGTTGCAACATTAGAAAAACCAAATCAATGCATCTACATTAACACAAGTTAAatggtgttgtgtgttttgacaacccgttctcactcctaactcgtaaaatacggacgcttgggcaGTGCCTCTCAGCACCAGATACAACGCAAAAAGCCCCCTTCAACATGTGTATGGagcgcaccgggcagagcagctgctgcgctttaaaggtcccatgctatgaaaatttcactttatgaggttttttaa
>XM_039796622.1
TATAATGATGCATTGTCCACAGGCTGCTCTGAAGCCGAGTGAACAACAGGGGCCCGCCGGGACTCTGGGACCAGTCTGAGAGCGCCCAGGGGATGAAGCAGCAAATAATAGCAACAGGATTAGAAAAACTGAAGGTTGTGGAGTCTGCAGGAGCATACAGCGGAAACAAAGCAGCTGTCCCCGTGTTTGAGTTGAGGATGTCTCTGCAGTCTCTGATGATGGCCCTTGCCATGGTCCTGGTCTTCCTGGGCCCCCACGCTAGCATGGCAGCCCCTCCAGGTGAGCCAGATGATGAGGCTTTTGACCTCGAAAACTACGACCTGAACAGTGAAATGGACTGGGAGAACCTGGACACCAACATTTATGGAGACAGTTATGATTACGACGACTTGGACCAAGAgATTGAGGTGGGCACGGTGGCACCAGAAACCCCTCCACCAGCCAACCAGCCCACAGCTGAACACTACGAGGAGGAGTTGACCCTGCCCACCCTGCCTCCAGCTCCCGTCACCCTGGACTTCAAGGGACCAGGTCTCTTTGGCCCTGACACCGGCCTGGGTATGCCTACCtgcctactgtgtgtgtgtattggtggTAGTGTGTACTGTGATGACATGGGCCTGGATCAGATCCCACCCCTGCCCAAAGAAACCACGCATTTGTATGGCCGCTTCAACAAGATCCGACATGTCAAGAACACAGACTTTATCAACCTCAATAAACTCCAGTCCATTGATCTAACAGGGAACCAGATCTCAGGGATGGATGAGGATGTGTTTCGCTCTCTGCCGCAGCTCAAGGAGTTACTGCTGGCTGACAACAACCTGCAGGTCATGCCTGAACTGCCAGTCACCATGAAATTCATTGATCTACGTAACAACAGGTTGATCAGTCGTGGGGTACATCCCGAAGGATTCAAgGATATGAGCCAGCTGGAATTCCTCTATCTGTCCAACAATAACCTGGATTACATTCCTACACCTCTACCACTGGGCTTGAGAGTGTTACACCTTCAGAATAACAACATTCAGTCTCTGCACGAGGACACCTTTTGTAACAGTCATGATCTCAACTTCATCCGCCGTAACCTGGAGGATATCCGTCTGGATGGCAACCCGCTGAACATCAACCTGTTTGCCCAGGCCTACGTCTGCCTGCCACGCCTGCCTGTAGGGAGTCACTGACAGTTGCAACATTAGAAAAACCAAATCAATGCATCTACATTAACACAAGTTAAatggtgttgtgtgttttgacaacccgttctcactcctaactcgtaaaatacggacgcttgggcaGTGCCTCTCAGCACCAGATACAACGCAAAAAGCCCCCTTCAACATGTGTATGGagcgcaccgggcagagcagctgctgcgctttaaaggtcccatgctatgaaaatttcactttatgaggttttttaa

Function

NR:

description
epiphycan-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039796621.1 True 1431 mRNA 0.51 7 4472165 4479342
XM_039796622.1 False 1429 mRNA 0.51 7 4472164 4479342

Neighbor

gene id symbol gene type direction distance location
LOC120558135 cacna1s,LOC103386795,LOC101064508 coding upstream 4450 4426793 ~ 4467714 (+)
elf3 elf3 coding upstream 85756 4377318 ~ 4386408 (+)
fbln2 NA coding upstream 110521 4272942 ~ 4361643 (+)
hdac11 hdac11 coding upstream 229664 4215524 ~ 4242500 (+)
cfap92 NA coding upstream 558944 3894305 ~ 3913220 (+)
LOC120556802 NA coding downstream 8260 4487602 ~ 4488595 (+)
LOC120556803 NA coding downstream 13251 4492593 ~ 4493168 (+)
LOC120556767 NA coding downstream 17462 4496804 ~ 4497837 (+)
LOC120556766 LOC104935308,LOC104932967 coding downstream 19243 4498585 ~ 4499094 (+)
LOC120558177 LOC100698470,LOC102194894,LOC101473847,LOC102310675,LOC102787480,LOC104957620 coding downstream 31201 4510543 ~ 4523824 (+)
G35834 NA non-coding upstream 101943 4369919 ~ 4370221 (+)
G35833 NA non-coding upstream 103114 4368691 ~ 4369050 (+)
G35739 NA non-coding upstream 642223 3772611 ~ 3829941 (+)
G35741 NA non-coding upstream 680191 3790004 ~ 3791973 (+)
G35737 NA non-coding upstream 703776 3767852 ~ 3768388 (+)
G35925 LOC104957620,LOC100698470,LOC102194894,LOC101473847,LOC102310675,LOC102787480 non-coding downstream 126118 4605460 ~ 4610060 (+)
G35941 NA non-coding downstream 131196 4610538 ~ 4613004 (+)
G35942 NA non-coding downstream 136551 4615893 ~ 4617397 (+)
G35958 NA non-coding downstream 211713 4691055 ~ 4694565 (+)
G36022 NA non-coding downstream 320629 4799971 ~ 4800984 (+)
G35791 LOC101072424,LOC104921976 other upstream 522036 3948834 ~ 3950128 (+)
epha8 epha8,LOC102791453 other upstream 882552 3453600 ~ 3589612 (+)
G35618 NA other upstream 1113344 3244231 ~ 3358820 (+)
G35578 NA other upstream 1455039 2930924 ~ 3017125 (+)
G35534 NA other upstream 1724392 2747220 ~ 2747772 (+)
G35921 NA other downstream 8193 4487535 ~ 4585475 (+)
LOC120557928 NA other downstream 50491 4529833 ~ 4532862 (+)
cdk5rap1 cdk5rap1 other downstream 432357 4911699 ~ 4934164 (+)
G36156 LOC103374102 other downstream 1441582 5920924 ~ 5924400 (+)
rybpb rybp other downstream 1555730 6035072 ~ 6055216 (+)

Expression


Co-expression Network