tgfa (tgfa,LOC102305789,LOC107385163)


Basic Information

Item Value
gene id tgfa
gene name tgfa,LOC102305789,LOC107385163
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 18593164 ~ 18598375 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039796637.1
CCTCTGACAGGATTACACGAGTTTCCTCAATTGAACACAGCGAAGTTAGACGCTTGGACATCCTGCTGCAGACTCTCGTGCTTTTGGCTGAAAAGAAGAAACTCGACCACAGTTACTTTTCTACCCCAGTCGATCAAATGTGACAGGTCTGCGCTGTGATCACAGGATTACGTGTTTTCTGTGCTGTTggtcgctgctgctgctgctgcaacactaaaGACTAATGTGTGCACACGCCCGCACTTCAGAGAAGCTGCCCGTGAACTCAGCCTACTTTAGTTTAGACCACAAGTCGTCATGATGACTCGGATTTTCTGGGATACAATTTTTCTCATCAGCGGTTCCCTCTTTACGATTGGAGCAGGACCGAGCAATTTGACAATTATTGAAGCCAGCGTATCCAACGACACAAACTTCACTGCTGCTCCGATCGCCTCAACAAGCAGCTCTGCAACAATCAGCAGCAGAAGCACAACTACCACAACTATTGCACCTACTACAGCAACAAACATCCCTCCAGTTAAAAGTTCCCTCTTTACATTTGGAGCAGAACCGAGCAATTCGACAATTATTGAAGCCAGCATTTCCATCGCTACAAACTTCACCGTTGCTCCAAACACCTCAACAAGCAGCTCTGCAGCAACCAGCAGCAGAAGCAAAACTACCACAACTATTGTACCTACTACAGCAATTAACATCCCTCCAGTTAAAAAGTTTGTGGCAGCGGCTGTTCGGTCTCATTTTGATGACTGTCCAGACTCCCACCGCCATTTCTGCTTCCACGGCACATGCCGCTTCCTGATCTTAGAAGAGACGCCTGCGTGTGTGTGTCATCCAGGCTTCATTGGGATGCGGTGTGAGCATGCAGACCTGCTTGCTGTAGTGGCAACTAATCACAGACAACAGACCGTCGCCACAGTGCTGGTGTTGTGTGTGATTGGGTGTGTTCTCATCATGTTGTTGTGTACGCTTTTACATTGCTGGTGGAGGCAGGACTGTCGCAGGCGGAGCCACGCACATCACTATGTCCCAGAGAAGCACGGAGCATCCTGCCATCCTTCTGAGAGTGgtactttatttatgttttacacaGTAAGGTATAAAGGCTAG

Function

symbol description
tgfa Predicted to enable epidermal growth factor receptor binding activity and growth factor activity. Predicted to be involved in several processes, including epidermal growth factor receptor signaling pathway; positive regulation of epidermal growth factor-activated receptor activity; and positive regulation of mitotic nuclear division. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular space. Is expressed in diencephalon; midbrain; retina; and third ventricle. Human ortholog(s) of this gene implicated in gastroenteritis and pancreatic cancer. Orthologous to human TGFA (transforming growth factor alpha).

NR:

description
protransforming growth factor alpha isoform X2

GO: NA

KEGG:

id description
K08774 TGFA; transforming growth factor, alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039796637.1 True 1110 mRNA 0.48 6 18593164 18598375

Neighbor

gene id symbol gene type direction distance location
patz1 patz1 coding upstream 13301 18565901 ~ 18579863 (+)
eif4enif1 eif4enif1 coding upstream 28529 18549976 ~ 18564635 (+)
c4h1orf74 LOC104948860 coding upstream 69124 18523155 ~ 18524040 (+)
tomm6 NA coding upstream 70078 18521759 ~ 18523086 (+)
tspo tspo coding upstream 75453 18515298 ~ 18517711 (+)
trub2 trub2,LOC102777509 coding downstream 13248 18611623 ~ 18615957 (+)
LOC120556859 NA coding downstream 41484 18639859 ~ 18645117 (+)
fkbp5 fkbp5,LOC102778077,LOC101485431 coding downstream 52930 18651305 ~ 18664585 (+)
LOC120557639 LOC101468781,LOC102197536,LOC100705767,LOC102779027 coding downstream 114565 18712940 ~ 18722231 (+)
LOC120557775 LOC100711209 coding downstream 133724 18732099 ~ 18737859 (+)
G39927 NA non-coding upstream 18953 18573982 ~ 18574211 (+)
G39926 NA non-coding upstream 19255 18573682 ~ 18573909 (+)
G39925 NA non-coding upstream 22181 18570591 ~ 18570983 (+)
LOC120557393 NA non-coding upstream 45972 18544155 ~ 18547192 (+)
G39861 NA non-coding upstream 140664 18448847 ~ 18452500 (+)
G39934 NA non-coding downstream 649 18599024 ~ 18599229 (+)
G39935 NA non-coding downstream 3341 18601716 ~ 18603100 (+)
G40049 NA non-coding downstream 390069 18988444 ~ 18988684 (+)
G40064 NA non-coding downstream 455753 19054128 ~ 19058578 (+)
G40073 NA non-coding downstream 477365 19075740 ~ 19077037 (+)
LOC120557740 acy1 other upstream 366586 18215706 ~ 18226578 (+)
tusc2b LOC104925135,LOC103359746,LOC102226579,LOC103137991 other upstream 398253 18189582 ~ 18194911 (+)
wnk2 wnk2,LOC104946158 other upstream 663046 17904698 ~ 17930118 (+)
LOC120556838 NA other upstream 859153 17720441 ~ 17734011 (+)
G39581 LOC104949003,LOC103357913 other upstream 983948 17607930 ~ 17609216 (+)
oxtrl LOC104920519,LOC103360274,LOC100702815,LOC102207462,LOC102295060 other downstream 697884 19296259 ~ 19314826 (+)
G40164 LOC103360294,LOC104965627,LOC100702547 other downstream 726454 19324829 ~ 19326625 (+)
brk1 brk1,BRK1,LOC106565571 other downstream 826491 19424866 ~ 19426456 (+)
slc38a3b LOC103360384 other downstream 843633 19442008 ~ 19470998 (+)
LOC120557344 LOC104966310 other downstream 1018806 19617181 ~ 19632519 (+)

Expression


Co-expression Network