XLOC_005096 (zgc:92040)


Basic Information

Item Value
gene id XLOC_005096
gene name zgc:92040
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 3926168 ~ 3940768 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009898
ATTCATCTGCTGTGTGGTTATCTGCATTGGACACGTCCCACAGGAGCTGCATCTGCTGTGTGTTTGACCATTATTAAGCGTGTCACTGTGTGTGTCAAAACCACATCGCTCTGGTCTGTATGTGTGGCTAAAATACATATAATCACATGAGCTGTGCTGAATAAGCATCGTCAGATTAGATCAGATGGTTCACCAGTTAAAGTTTGATAAAAACATCTTGTTTTAGTCTTCATACCAGCAGTGGAGATGTGTTCTCTCCTCCGGCCTCCAGCGTTGAGTCGTCTCATATGTGTACGGCTCAAAACCATGGCTGCCTCGCAGTTCCCAGCAGCAAAGCGTAGTGGAGAGCTGAATAACCCATCACCGGCTGCGTATCTGCGATTCGAGGACCCTCAGGCGTTCAGAGTGAAGAGTCTGTGGGAGCTGATCCGGGCCCTCGGTGTCTTCAGGCTCTGCTCGTTCCCTGTGCTGGTCAACAACTGCGGAAAGCTGATGTCTTTCTCGAGGAGGGTTTTGGGAAAGCGTTGTTTCTGCATGGTCCTCCGTCCGTCTGTTTACGCTCAGTTTGTGGCTGGAGAAACAGAAGGAGAGATCGCAGACTCCATGCAGAAGATGAGCTCTCTAGGCCTCCATCCAATGCTGGCAGTTCCTATCGAAGAGGACCTGGGGGAGAGCACCGGGGAAAAGCGATATGACGATAACCTGTCGGCCATGCTGGAGTGTGTCTTCATGTCTCACAGTAATGGATGGAGTAACAATCCCATGATGCAGCTGAAGATCACAGCTTTAGTCAGCCCTGAACTGTGTGTTAAGCTGACCTCTCTGCTGAAAACAGAACTGTATGATCTGAACTTGCTTGTCAAAGCCATGGATGGAGAGGAAGTCTTGTTTCCCGGTCTAACTGAGAGTGAAAACACACACCTGCTATTTGGCCTTCGGAGGCTCAACAAAATCGGAGAGGCGAGTGTTAATAAAGTGCGTGTTCTGGTGGATGCAGAGTACACATACATGAATCCCGCGCTGTCACTCATCACGATGGCCATGATGAAGAAATTTAATCAACAAAGTGCCTGGATCTGGAACACCTACCAGTGCTACCTGAAGGAATCGAGAAATCTATTACTTGATGCCGTTCAGACATCCATCAATCAGAGTTTTTGTTTCGGCGTTAAACTCGTCAGAGGAGCTTACATGGACAAAGAAAGAAAACTAGCTGAAAAAGAAGGACGGACAGATCCAATCCACGAATCATGGGAGCATACTAATGACAGCTATAACGGATGTCTAGAGCTCATGTTGAAGCTGATTGCAGAGAAACCAGAGCGATACATGATGATTGTTGCCACTCACAATGAAGAATCAGTCAGACGGGCTGTGACGcaTATGGCAGAGCTTGGACTTCACAGAGATGGAAACTCAGTGTGTTTTGGTCAGCTGTTGGGCATGTGTGACCATGTCTCTCTAACTCTAGCTCAGCATGGTTTCTCAGTGTATAAGTCAGTGCCGTACGGATCGGTGGACGACACGCTGCCGTATCTGGTGCGACGAGCTCAGGAGAACCGCACCGTCCTCCAGGGGATCCGGAAGGAGAGAGATCTGCTCAGACAGGAGCTCCACCGCAGACTCAAAGAAAAGATCAGCAGATCCACAAAGAGAAACTGCGCTGGAAATCAAACTAAGGGGCAAGTGGGAAAAGACTTTTAATGCTTGAGCCTGAATGATCATGTATTTGTCGACAGAACAATGGAGAAATGTCCTGTAAGGTCACTGGAAGATGGAAAACAGCGCCTGCTAGTGGACATTCATTGGGAGGATGGGATTAtctcaaattaacttttttatgcaCAGGTCATCAATGCACATTAACAAGTTTGTCCTTGTAAgttattagtgctgggcaaagattaatcacaaatcatgtaatttcaaaataaaagtttattttgacaTTAGAAATGCTTGtgtattatacagttgaagtcagaattattagcccccttgaattattagccccttgtttattttttccccaatttctgtttaacggagagcagatttttttcagcacatttctaaacataatagttttaataactcttataactgatttattttatctttgccatgatgaccgtaaataatatttgtctagatatttttcaagacacttctatacagcttaatgtgacatttaaaggcttaactaggttaactaggttaactgggcaggttagggtaattaggcaagttattgtataatgatggtttgttttgtagcctatcaggaaaaaatatagcttcaaggggctaataattttgaccttaaaatggattttaaaaaatttaaaactgcttttattctagccgaaataaaacagataagactttctccagaataaaaaatattatcagacatactgtgaaaatttccttgctctgttaaacatcatttggaaaatattttaaaaagaagaaaaaaatttaaagggggctaataattctgacttcaactgtatatagctctagattaaaaacaatattaatgtcACTGTTAGATAACCCATTGGAATGCAGCTTTATTAATAATGaacctttattaataataatatttgagtacTGAAAATAActgagcaccaaatcagcatattagactGCTTTCTGAAGGAGTAactgaagtaatgaagctgaaaattctgcTTTGGATCACAGGAATACATGACGTTTCAAAATATATATCTAATCTGTGGTCATTCATTTAAAGTGGCTTTAATTTTACTTCTCACAACTACTGTAgaagatgaaa

Function

symbol description
zgc:92040 Predicted to enable FAD binding activity and proline dehydrogenase activity. Predicted to be involved in proline catabolic process to glutamate. Predicted to act upstream of or within proline catabolic process. Predicted to be active in mitochondrion. Is expressed in liver; pancreas; pronephric duct; and yolk syncytial layer. Orthologous to human PRODH2 (proline dehydrogenase 2).

GO:

id name namespace
GO:0010133 proline catabolic process to glutamate biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0006560 proline metabolic process biological_process
GO:0006562 proline catabolic process biological_process
GO:0005739 mitochondrion cellular_component
GO:0016491 oxidoreductase activity molecular_function
GO:0071949 FAD binding molecular_function
GO:0004657 proline dehydrogenase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-87 Predicted to enable FAD binding activity and proline dehydrogenase activity. Predicted to be involved in proline catabolic process to glutamate. Predicted to act upstream of or within proline catabolic process. Predicted to be active in mitochondrion. Is expressed in liver; pancreas; pronephric duct; and yolk syncytial layer. Orthologous to human PRODH2 (proline dehydrogenase 2).

Ensembl:

ensembl_id ENSDARG00000021154

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009898 True 2803 mRNA 0.42 11 3926168 3940768

Neighbor

gene id symbol gene type direction distance location
XLOC_005095 gdpd3b coding downstream 22157 3893032 ~ 3904011 (-)
XLOC_005094 NA coding downstream 60934 3860464 ~ 3865234 (-)
XLOC_005093 taok2b coding downstream 85504 3789114 ~ 3840664 (-)
XLOC_005092 NA coding downstream 139786 3782621 ~ 3786382 (-)
XLOC_005091 MAZ coding downstream 147320 3766557 ~ 3778848 (-)
XLOC_005097 eif3c coding upstream 3461 3944229 ~ 3962372 (-)
XLOC_005098 ppp4cb coding upstream 23583 3964351 ~ 3978342 (-)
XLOC_005099 si:ch211-136m16.8 coding upstream 40578 3981346 ~ 3992839 (-)
XLOC_005100 si:ch211-180a12.2 coding upstream 57996 3998764 ~ 4028079 (-)
XLOC_005101 aldoab coding upstream 111412 4052180 ~ 4070058 (-)
XLOC_005087 NA non-coding downstream 356087 3569747 ~ 3570081 (-)
XLOC_005086 NA non-coding downstream 382152 3519168 ~ 3544016 (-)
XLOC_005083 NA non-coding downstream 641259 3281756 ~ 3284909 (-)
XLOC_005102 NA non-coding upstream 148969 4089737 ~ 4129820 (-)
XLOC_005103 NA non-coding upstream 202826 4143594 ~ 4169699 (-)
XLOC_005105 NA non-coding upstream 249254 4190022 ~ 4194304 (-)
XLOC_005109 NA non-coding upstream 291089 4231857 ~ 4232505 (-)
XLOC_005111 NA non-coding upstream 334142 4274910 ~ 4287034 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000047_04096532_04103860 PRODH2 coding CI01000047 null 4096532 ~ 4103877 (+)