rplp0 (rplp0,LOC102776933)


Basic Information

Item Value
gene id rplp0
gene name rplp0,LOC102776933
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 11149713 ~ 11152286 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039796696.1
AGGTGATTGACACATCATCCATCCAATGGGTGTGCAGCTGACGCCCATGACTCCATTGTGATTGGTCATTGTTTGGTATATATCCTTCTCGCGGCCATTCCTATTCCTCTTTCTTTCACGCGACCCTCTTGTGTCCGATATTACCTTGTCTTTAAACCAGCTGTTAAGCGATCCTTGGAAGCACTGCAAAGATGCCCAGGGAAGACAGGGCCACGTGGAAGTCCAACTATTTTATGAAAATCATCCAACTTCTGGATGACTTTCCAAAATGCTTCATTGTGGGTGCAGACAATGTGGGATCTAAGCAGATGCAGACCATCCGTCTGTCTCTGCGTGGCAAGGCCGTGGTGCTGATGGGCAAAAACACCATGATGCGCAAAGCCATTCGTGGCCACCTGGAGAACAATCCTGCCTTGGAGAAGCTACTGCCTCACATTAAAGGAAATGTGGGCTTTGTCTTCACCAAGGAGGATCTGGCTGAGATCAGAGACCTGCTGCTGGCAAACAAGGTACCTGCAGCTGCCCGTGCTGGTGCCATCGCCCCTTGTGATGTGGTTGTGCCAGCCCAGAACACTGGTCTGGGTCCTGAGAAGACCTCTTTCTTCCAGGCTCTGGGTATCACCACAAAGATCTCCAGGGGAACCATTGAAATCTTGAGTGATGTCGGTTTGATCAAGACTGGGGACAAGGTTGGTGCCAGCGAGGCCACACTCCTCAACATGCTGAACATCTCACCCTTTTCCTACGGACTCAACATCCAGCAGGTGTATGACAATGGCAGCGTTTACAGTCCTGAGGTGCTTGACATCACAGAGGCTTGTCTGCATGCCAGGTTCCTGGAGGGTGTGAGGAACATCGCTAGTGTGTGTCTGGAGATTGGCTACCCCACTTTGGCCTCTGTCCCCCACACAATCATCAATGGCTACAAGAGAGTACTGGCTGTTGCTGTGGAGACGGACTACTCCTTCCCCCTGGCAGATAAGGTCAAGGCCTTCCTGGCTGACCCATCTGCTTTTGTAGCTGTTGCAGCACCTGCAGCAGCTGCTGAGACTGCTGCAGCACCAGCTGCTAAGGAGGAGGTCAAGGAGGAGTCTGAGGAATCGGATGATGACATGGGCTTCGGTCTGTTCGACTAATTAAAAATACAGCGAACAAACCAGATATGAGTCAAATAACATCATGATTCAATAAAGTCTCTTAGATCCATCTA
>XM_039796697.1
ATATTACCTTGTCTTTAAACCAGCTGTTAAGCGATCCTTGGAAGCACTGCAAAGATGCCCAGGGAAGACAGGGCCACGTGGAAGTCCAACTATTTTATGAAAATCATCGTAAGTAGGACTTGGCTTATCAACTTCTGGATGACTTTCCAAAATGCTTCATTGTGGGTGCAGACAATGTGGGATCTAAGCAGATGCAGACCATCCGTCTGTCTCTGCGTGGCAAGGCCGTGGTGCTGATGGGCAAAAACACCATGATGCGCAAAGCCATTCGTGGCCACCTGGAGAACAATCCTGCCTTGGAGAAGCTACTGCCTCACATTAAAGGAAATGTGGGCTTTGTCTTCACCAAGGAGGATCTGGCTGAGATCAGAGACCTGCTGCTGGCAAACAAGGTACCTGCAGCTGCCCGTGCTGGTGCCATCGCCCCTTGTGATGTGGTTGTGCCAGCCCAGAACACTGGTCTGGGTCCTGAGAAGACCTCTTTCTTCCAGGCTCTGGGTATCACCACAAAGATCTCCAGGGGAACCATTGAAATCTTGAGTGATGTCGGTTTGATCAAGACTGGGGACAAGGTTGGTGCCAGCGAGGCCACACTCCTCAACATGCTGAACATCTCACCCTTTTCCTACGGACTCAACATCCAGCAGGTGTATGACAATGGCAGCGTTTACAGTCCTGAGGTGCTTGACATCACAGAGGCTTGTCTGCATGCCAGGTTCCTGGAGGGTGTGAGGAACATCGCTAGTGTGTGTCTGGAGATTGGCTACCCCACTTTGGCCTCTGTCCCCCACACAATCATCAATGGCTACAAGAGAGTACTGGCTGTTGCTGTGGAGACGGACTACTCCTTCCCCCTGGCAGATAAGGTCAAGGCCTTCCTGGCTGACCCATCTGCTTTTGTAGCTGTTGCAGCACCTGCAGCAGCTGCTGAGACTGCTGCAGCACCAGCTGCTAAGGAGGAGGTCAAGGAGGAGTCTGAGGAATCGGATGATGACATGGGCTTCGGTCTGTTCGACTAATTAAAAATACAGCGAACAAACCAGATATGAGTCAAATAACATCATGATTCAATAAAGTCTCTTAGATCCATCTA

Function

symbol description
rplp0 Predicted to enable large ribosomal subunit rRNA binding activity. Predicted to be a structural constituent of ribosome. Acts upstream of or within chordate embryonic development. Predicted to be located in cytoplasm; nucleus; and ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in several structures, including brain; digestive system; eye; otic vesicle; and ovary. Orthologous to several human genes including RPLP0 (ribosomal protein lateral stalk subunit P0).

NR:

description
PREDICTED: 60S acidic ribosomal protein P0-like

GO:

id name namespace
GO:0006414 translational elongation biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02941 RP-LP0, RPLP0; large subunit ribosomal protein LP0

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039796696.1 True 1210 mRNA 0.51 8 11149713 11152286
XM_039796697.1 False 1093 mRNA 0.51 7 11150149 11152286

Neighbor

gene id symbol gene type direction distance location
LOC120556879 pxn,LOC107385500,LOC103366908 coding upstream 2271 11115242 ~ 11147442 (+)
myl2a LOC104927948,LOC103386220,LOC103366907,LOC100699907 coding upstream 46052 11100133 ~ 11103661 (+)
cita LOC100706533 coding upstream 51663 11054190 ~ 11098050 (+)
LOC120557557 LOC106915059,LOC102221633,LOC106958204,LOC103464975,LOC100700174,LOC102210230,LOC102299123 coding upstream 96510 11051110 ~ 11053203 (+)
LOC120556651 NA coding upstream 98897 11028795 ~ 11050816 (+)
LOC120556881 LOC106956972,LOC106927802,LOC104927944,LOC102076673,LOC103366911 coding downstream 1264 11153550 ~ 11156414 (+)
r3hcc1 LOC104945372 coding downstream 4422 11156708 ~ 11167806 (+)
aggf1 aggf1 coding downstream 67103 11219389 ~ 11226582 (+)
LOC120558172 LOC104927939,LOC104961953,LOC100699369,LOC102798792,LOC103359250 coding downstream 84421 11236707 ~ 11243365 (+)
LOC120558115 NA coding downstream 111224 11263510 ~ 11266070 (+)
G37383 fam219a non-coding upstream 206087 10936683 ~ 10943626 (+)
LOC120557560 NA non-coding upstream 220326 10928477 ~ 10929387 (+)
G37370 kiaa1161,LOC103376128 non-coding upstream 233914 10910297 ~ 10915799 (+)
G37367 NA non-coding upstream 352289 10796979 ~ 10797424 (+)
G37363 NA non-coding upstream 488389 10660866 ~ 10661324 (+)
G37521 NA non-coding downstream 192454 11344740 ~ 11345059 (+)
G37522 NA non-coding downstream 194800 11347086 ~ 11347671 (+)
G37523 NA non-coding downstream 196850 11349136 ~ 11349368 (+)
G37524 evc2 non-coding downstream 197264 11349550 ~ 11349773 (+)
G37526 NA non-coding downstream 201990 11354276 ~ 11354743 (+)
G37397 LOC102299939,LOC103353648,LOC103366902,LOC102208776,LOC100700987,LOC104921056 other upstream 136804 10997230 ~ 11012909 (+)
glrx glrx other upstream 753526 10387908 ~ 10396187 (+)
G37197 NA other upstream 839717 10305187 ~ 10309996 (+)
prickle2b prickle2 other upstream 1293057 9760233 ~ 9856656 (+)
G36744 NA other upstream 2920993 8227762 ~ 8228720 (+)
G37525 evc2 other downstream 199792 11352078 ~ 11352387 (+)
LOC120557336 LOC103359259,LOC100704408,LOC101476502,LOC102796717,LOC102216118 other downstream 232898 11385184 ~ 11394398 (+)
G37597 NA other downstream 627892 11780178 ~ 11805394 (+)
G37714 NA other downstream 1100780 12253066 ~ 12254974 (+)
LOC120557851 krt18,LOC105931717,LOC101469154 other downstream 1122474 12274760 ~ 12278624 (+)

Expression


Co-expression Network