LOC120556883 (LOC104930311,LOC103370811,LOC104960357,LOC100711115,LOC101474327)


Basic Information

Item Value
gene id LOC120556883
gene name LOC104930311,LOC103370811,LOC104960357,LOC100711115,LOC101474327
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 35275097 ~ 35278434 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039796701.1
cTGTCTTCCTCTCCATCCTCCCTGTCCTCTGATTTCTGTCTCTGCTGCTTTCACTacattctctttctctttccctctggctttaaaccttttttttcttcaattcaCCTGCTGTTTGGCCTGTTCAAGAAGGCTGCCTGGAAACTCAGTATATTtctgctcttttctttttttttatcaccagCCTGTTCACATTTTTCTATGAGGCTCTagcatcagttttttttttaatcacagaaaGAAGATGCCACGTTCCTTTTTGGTGAAGCAGCCGAAGGTTCACGATTTCTCATCTTCTAACTACtaccatcagcagcagcagaactgGGACGACTCTTACACTGTGACACATGCCATCACAGAGTCGGCGACCAACTTGGCGGTGCGTTTGAGTGAAAATGGCTACATCCACGATTACATCATCCCCTCAGTGTTGCAGACCACAAAGGAGCCAGGTCATGAGCAGGACGGGCTCTCCTCAATGCCCCTGTACTCCCCAGGTGGCAGTGGCGGGGAAGAGTTCTCCGACCATGACATGGAGCATCCGGACAGTCCCGTTTCTAGTGGCACAGTCGAGTCAGACAGTAGCAGCCCTGAGTTGGAGGCGTGCGACATCAACACCTTCCTCATCTCTGACGGCCGCTCCCGCCATAGGCCGAACAAGAGGTGTCCACGCAAAGGAGGCAGCCAATCGGACAGCAGTGAGGGTATCGGCTCGGCAGACTGCAGCCCCACCAAAGGGAAATCCAAAGGGCGCCACATGTGCGGCGAGTGTGGCAAGTCTTACGCCACGTCTTCCAATCTgagcagacacaaacagacgcaCCGCAGTCTGGACAGCCAACAGGCAAGGAAGTGTCCCACCTGCCACAAGGTGTACGTGTCCATGCCAGCACTGGCCATGCACATGCTGACCCATGACCTGAAGCACGAGTGCACGGTGTGCGGCAAAGCCTTCAGTCGACCCTGGCTCCTGCAGGGCCACATGAGGTCCCACACTGGGGAGAAACCGTTCGCCTGTGCCCACTGTGGCAAAGCCTTCGCCGACCGCTCCAACTTGCGCGCCCACATGCAGACGCACTCGGCCTTCAAGCACTACTCCTGCAAACGCTGCCACAAAAGCTTTGCACTCAAGTCATACCTGAACAAGCACTACGAGTCGGCCTGCTTCAAAGGGCACCAACCAGAGGACGACAGCAGCTCTGAGGACTGATTGggatatatttatctttttcatttctatttctataCTTTGTAATAGTTCCTACAACAAAGTGAAAAGAAGCTTGCCACTTCTCAGGCTTGTCACATGCATGCATCATAATCCTGCCTTTTGATATAAGCAATAACCTCACTTGAAATTATTCAGGAATTATGTATGAAATTCATAAAAATCTCAGTGTTGATCACAAATATACaatatttatattgttttttatcaATTGAATTGCAATAATTTAGTATTATTTTATATGACACATTTTACCTCACACATAtcttatttgttaaaaaaattatttgtgtatttattaatttattttaactatttatttgcccattttgaagattatttatttattattggttGATGTATTTGTGAATTTAACATGGATTTATTAGAAGCCATGTATTGGATTTGTTGAAAACAAAAGCCAATATATATTCTGACACTATTTCTCTGTCTGATCAATTTGGTGATGACAATAAAActgatgaaaataaataattactaAAG

Function

NR:

description
PREDICTED: transcriptional repressor scratch 2

GO: NA

KEGG:

id description
K09219 SCRT; scratch

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039796701.1 True 1735 mRNA 0.45 2 35275097 35278434

Neighbor

gene id symbol gene type direction distance location
ube2v1 LOC103133159,LOC106912622,LOC102222270,LOC103465507,LOC104930303,LOC106519068 coding upstream 75101 35163484 ~ 35199996 (+)
LOC120557490 NA coding upstream 268969 35004942 ~ 35006128 (+)
LOC120557093 NA coding upstream 904003 34370229 ~ 34371094 (+)
LOC120557827 NA coding upstream 1207755 34047432 ~ 34067342 (+)
znf831 NA coding upstream 1234814 34026311 ~ 34040283 (+)
LOC120556789 LOC104930304,LOC100703713,LOC103370810,LOC102215223 coding downstream 38043 35316477 ~ 35319169 (+)
LOC120557477 LOC103375199,LOC104930306,LOC101473264,LOC108251201 coding downstream 147927 35426361 ~ 35452319 (+)
LOC120558245 NA coding downstream 161543 35439977 ~ 35440139 (+)
tp53rk tp53rk coding downstream 192560 35470994 ~ 35473326 (+)
LOC120556919 NA coding downstream 239304 35517738 ~ 35519948 (+)
G43811 NA non-coding upstream 48449 35226402 ~ 35226648 (+)
LOC120557494 NA non-coding upstream 270329 35003472 ~ 35004768 (+)
G43737 NA non-coding upstream 276360 34996613 ~ 34998737 (+)
G43729 LOC100711384,LOC101475072,LOC102214007,LOC103373511 non-coding upstream 312914 34960653 ~ 34962183 (+)
G43723 NA non-coding upstream 333657 34941191 ~ 34941440 (+)
LOC120556905 NA non-coding downstream 59569 35338003 ~ 35338576 (+)
G43859 NA non-coding downstream 180273 35458707 ~ 35459016 (+)
G43874 NA non-coding downstream 251399 35529833 ~ 35530044 (+)
G43877 NA non-coding downstream 262041 35540475 ~ 35541252 (+)
LOC120556868 NA non-coding downstream 279217 35557651 ~ 35560888 (+)
G43656 NA other upstream 607915 34665236 ~ 34667182 (+)
LOC120557806 LOC105901862,LOC101061984,LOC103047442 other upstream 1929291 33340284 ~ 33345806 (+)
angpt4 LOC103371190,LOC107384963,LOC105920078,LOC106931961 other upstream 1938330 33262195 ~ 33336767 (+)
G43277 NA other upstream 2062779 33187738 ~ 33212318 (+)
LOC120556790 LOC104958239,LOC105940397,LOC103464819,LOC103150142,LOC106923340 other upstream 2233786 33037934 ~ 33041311 (+)
LOC120556915 NA other downstream 185338 35463772 ~ 35486235 (+)
G43924 NA other downstream 385709 35664143 ~ 35666041 (+)
trnac-gca_18 NA other downstream 684105 35962539 ~ 35962610 (+)
fezf2 fezf2 other downstream 1424821 36703255 ~ 36711295 (+)
plekha6 plekha6 other downstream 2682272 37960706 ~ 38096072 (+)

Expression


Co-expression Network