LOC120556884


Basic Information

Item Value
gene id LOC120556884
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 41362503 ~ 41365014 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039796702.1
CTGGACCTGTAGCTGATTGTTTACTGTATATGGAGATGATATTCAGCTGTTTCCTTCAGACACAACCTCTCTCTGTCGGAGGATAGAAAACAGCAGATGATTACATTTCTAATTCTTCAGATTTGCATCGTGTCAGAGTTCTGCTCTTCTCCTTCAGACTTTGCGCAGTTTAGCttttacatttctacatttaatCCTTTTTACTGAATGAGACTGAAGGAAAGAAGTTCTTCTGTTTTTGGATCTTTGCACCTGAAGCTTTTCTGCAGCAACTCTTCGACAACCATGAAGATCTCCATCATTGCCGGTGTGCTGCTGCTTTCTGCTGCCGTGATCTCTCTGGATTTTGTGAGAGAAGAAAAAACTCTGGCTGCAAAGTTTATAAATCAGCATATCAACGAGGAGATGAACAGTAACAACTGCACCAAGGTGATTAATGACAGAGGAATCACGGACTACAACGGCAACTGTAAGCCGATGAATACCTTCATCGGGGCGCCTATCGGAACCGTCAGAGGCATCTGTGGGACTGGAGgacagaaatactttaataaaaagaaacctGGCATTCGCAATCTCAGAAAAAGCCGAGCACCCTTTAACATTGTTGTCTGCAGACTGAAGGATGCTACTGTCGCTCCTTGTGAGTACGAAGGTGCAGCTTATAACAGGCACATTGTAGTCGCATGCGATGTTAAAGGAGATCCTGTTCACTTTGATAGGTTTCTGTCTTATTAACCAGCTGATGAATCAGTGGACCTTGGGTCTCTTGTTGAATAAAACCCAGCTGACAGTTTA

Function

GO:

id name namespace
GO:0042742 defense response to bacterium biological_process
GO:0004540 ribonuclease activity molecular_function

KEGG:

id description
K01168 RNASE1_2; pancreatic ribonuclease

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039796702.1 True 798 mRNA 0.43 2 41362503 41365014

Neighbor

gene id symbol gene type direction distance location
LOC120557130 NA coding upstream 2149 41358141 ~ 41360354 (+)
LOC120557311 NA coding upstream 372583 40961708 ~ 40989920 (+)
LOC120557310 NA coding upstream 448249 40872849 ~ 40914254 (+)
LOC120556655 NA coding upstream 541406 40807228 ~ 40821097 (+)
LOC120557677 NA coding upstream 564454 40738891 ~ 40798049 (+)
LOC120557132 NA coding downstream 41529 41406543 ~ 41412621 (+)
LOC120556749 NA coding downstream 260193 41625207 ~ 41628189 (+)
LOC120557138 NA coding downstream 374311 41739325 ~ 41743157 (+)
LOC120556746 LOC106676760 coding downstream 593279 41958293 ~ 41961170 (+)
LOC120556737 NA coding downstream 598350 41963364 ~ 41987577 (+)
G44758 NA non-coding upstream 56383 41305908 ~ 41306120 (+)
G44757 NA non-coding upstream 56722 41304778 ~ 41305781 (+)
G44751 NA non-coding upstream 285371 41045844 ~ 41077132 (+)
G44633 NA non-coding upstream 337161 40949921 ~ 41025342 (+)
G44731 NA non-coding upstream 494896 40827420 ~ 40867607 (+)
G45095 smpd4 non-coding downstream 16208 41381222 ~ 41387063 (+)
G45119 LOC106676758 non-coding downstream 122318 41487332 ~ 41501091 (+)
G45174 NA non-coding downstream 337620 41702634 ~ 41703077 (+)
G45193 NA non-coding downstream 490646 41855660 ~ 41858286 (+)
G45190 NA non-coding downstream 547150 41912164 ~ 41915303 (+)
LOC120557312 NA other upstream 431120 40848815 ~ 40931383 (+)
LOC120557687 NA other upstream 693761 40666199 ~ 40668742 (+)
LOC120557674 NA other upstream 814655 40519942 ~ 40547848 (+)
G44690 NA other upstream 855933 40480676 ~ 40506570 (+)
LOC120557139 LOC106956008,LOC103153866,LOC103464266,LOC108411580,LOC102236494 other downstream 385989 41751003 ~ 41768313 (+)
G45186 NA other downstream 504716 41869730 ~ 41880367 (+)
dynlrb1 dynlrb1,LOC106565026 other downstream 531981 41896995 ~ 41902631 (+)
map1lc3a map1lc3a,LOC107551126 other downstream 540515 41905529 ~ 41912117 (+)
G45237 NA other downstream 913271 42278285 ~ 42301895 (+)

Expression


Co-expression Network