endou (endou,LOC102787429)


Basic Information

Item Value
gene id endou
gene name endou,LOC102787429
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 15657531 ~ 15661996 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039796730.1
AGTCAGTTCACCTTGTTTTCAGGTTGCAGCTGAGCCAAGATGAAGGCCATTGCTGTCTTTGCACTTTGGGTGACCCTTTTCCACCAGGGATACAGCAACACCCTGGACTCATGTCAGGGTCGGTGTGGTTATGGGACGGACAATAGTTTCTCCTGTCAGTGTAACCCGTCCTGTGAGCGCTACAGAGACTGTTGTTCTGACTACACTGAAATATGTAAAGGTGACGGAGGAGGTGGAGGTAGCGTGATCACTGATGCTGAGATCAAGGCTCTCTCTGAGACACTCTACGCTCTGGATTCAAACAAGGCTTCAGACTCAGAGTTGGTCATTGACCCTCAGGCTCTGGTGCCAGACTCTCAGACGAGCTCCAAAGACGATCTTGCCTCTGCACCCTTGTTCCAATACCTGAATGAGGAGGCTCTGTTCTCTAGACCCACCTACGCTGCTCTCCTGGCTTTGCTGGACAACTATGACAGGATGACTGGACAGACAGAGGACTTCAGTCCTGAGCAGCTGGCTGAGCAGGACGTCTTTCTCAAGGAGACCATGTCCAACACTGAGCTGGGCAGAGAGCTGTTTGCTTTTCTCTACACCAAAGGCATCTATGCATCAGAGGAAGAGTTCATTCAGGACCTGAAGATGATGTGGTTTGGTCTGTACTCCCGCAACAAAAACAAGATGGACTCCAGCGGCTTTGAACACATCTTCGCAGGAGAGATCAAGGGAGGAAAGGTGTCTGGTTTCCACAACTGGATTCGCTTTTATCTTCTCGAGAAAAAAGGACAGCTGAACTACTACAGCCACAGCTTCAATGGGCCTTGGGCTACCTACCCTGATGTCATGGGGATGCAGTTCATGTGGGAGGGCTACTACAAGCAGGTCGGTTCTTCAGTGATTGGCTGCAGCCCTGAATTTGACTTTGCCTTATACAGCCTCTGCTACATCACTCGCCCTGGAAAACAGTGTCGTCTGAGCCTGGGAGGGAAGGCGCTCATTATCCAAACGTACACGTGGGATAACTCTTTCTATGGTGATGGGAAGAAGTACATTGGCTCTGCCTTCCCTGCAACCCCATAAGAACTGAAGCTGCCATCTGCTAAATTATAAGCAACTCACGGAGGAGTCTGCTTGTGTTTCATTACACTCATGAATTTAATAATTATATTCCCAACAGGAGCACTTCTCTTAGTGAGAGGTATTCATACATTTAATTAAACTTGTCTGtttcaaagtttaaaaaatatgtgGTGATATAAAACCGCTTATTTTCATTCCCAAAATGTTTCTATAAAGCAGGAATAAAAGGAAAAATGAA

Function

symbol description
endou Predicted to enable RNA binding activity and endoribonuclease activity. Predicted to be located in extracellular region. Orthologous to human ENDOU (endonuclease, poly(U) specific).

NR:

description
PREDICTED: poly(U)-specific endoribonuclease

GO:

id name namespace
GO:0006898 receptor-mediated endocytosis biological_process
GO:0006955 immune response biological_process
GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic biological_process
GO:0005576 extracellular region cellular_component
GO:0004521 endoribonuclease activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0030247 polysaccharide binding molecular_function
GO:0005044 scavenger receptor activity molecular_function

KEGG:

id description
K14648 ENDOU, PP11; poly(U)-specific endoribonuclease

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039796730.1 True 1315 mRNA 0.47 8 15657531 15661996

Neighbor

gene id symbol gene type direction distance location
smarcc2 smarcc2,LOC102786132 coding upstream 13976 15631352 ~ 15643555 (+)
LOC120556683 LOC102785850,LOC100702077,LOC102299981,LOC103376602,LOC102207065,LOC102237428 coding upstream 31486 15606682 ~ 15626045 (+)
LOC120556642 mettl7a,LOC102782606,LOC101484749,LOC103385978,LOC103147640 coding upstream 200567 15455607 ~ 15456964 (+)
LOC120556644 NA coding upstream 202041 15453193 ~ 15455490 (+)
si:dkey-195m11.8 LOC103376590 coding upstream 281919 15359663 ~ 15375612 (+)
LOC120557865 LOC103376609,LOC103465378 coding downstream 14871 15676867 ~ 15709140 (+)
LOC120556700 NA coding downstream 48220 15710216 ~ 15710890 (+)
LOC120556777 gpr84,LOC108235641 coding downstream 51253 15713249 ~ 15715495 (+)
tac3b NA coding downstream 74549 15736545 ~ 15741669 (+)
b4galnt1b b4galnt1,LOC104942127 coding downstream 110193 15772189 ~ 15789905 (+)
G38832 NA non-coding upstream 13132 15644061 ~ 15644399 (+)
G38829 NA non-coding upstream 30691 15626311 ~ 15626840 (+)
G38788 espl1 non-coding upstream 114159 15542253 ~ 15543372 (+)
G38762 NA non-coding upstream 194079 15462301 ~ 15463452 (+)
G38738 scn8a,LOC106518053,LOC106572732,LOC103465359,LOC108440919 non-coding upstream 260024 15396729 ~ 15397507 (+)
G38852 NA non-coding downstream 11983 15673979 ~ 15755059 (+)
G38858 NA non-coding downstream 57000 15718996 ~ 15722184 (+)
G38860 NA non-coding downstream 65983 15727979 ~ 15729400 (+)
G38885 LOC104942130 non-coding downstream 98796 15760792 ~ 15762315 (+)
G38948 NA non-coding downstream 252543 15914539 ~ 15914901 (+)
G38834 NA other upstream 9680 15645511 ~ 15647851 (+)
calcoco1b LOC104959845,LOC103376572 other upstream 783072 14865059 ~ 14874459 (+)
znf740a LOC107385642,LOC101469799,LOC102214350,LOC102304359,LOC103376569,LOC107082105,LOC100709046 other upstream 800462 14765297 ~ 14857069 (+)
G38517 NA other upstream 841095 14808352 ~ 14816436 (+)
cdk4 LOC107684003,LOC107701179 other upstream 900172 14740609 ~ 14757359 (+)
crbn crbn,LOC102793823 other downstream 261325 15923321 ~ 15937097 (+)
ccdc174 ccdc174 other downstream 303406 15965402 ~ 15974237 (+)
eefsec eefsec,LOC102787825 other downstream 387682 16049678 ~ 16060330 (+)
LOC120557902 rab7,rab7a,LOC102230535,LOC106583206,LOC105017191,LOC101061812 other downstream 487129 16149125 ~ 16158362 (+)
G39104 LOC103385912,LOC104930488,LOC103358732,LOC101079922 other downstream 771242 16433238 ~ 16435229 (+)

Expression


Co-expression Network