LOC120556934 (LOC104941416,LOC101064200)


Basic Information

Item Value
gene id LOC120556934
gene name LOC104941416,LOC101064200
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 15824383 ~ 15833934 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039796824.1
AGCCTGCTGGTGGAGAATGTTAGTAAACTGTTCACTGACAGCCTGGTTAGCTGTCATCATCACGCCTCGCCACCTcttacgttagctagctaactaaatgtcttaatGCGATGAACCGGGAATTTATTGATCATGGCTAACCTACGGATTTCGTTAGCTGCCTTGGTTGTTCAGGTCGTCCTGTACAGAAACTGCGAGGCTCTGTGGTGTAACTGCACCACTGCCCAGTGCGAGAAGACTGGCTACCAGTGTGAGACCGATGGAGCCTGCAAGGCCTCCACTTCCTTAATTGATGGCCAAGAGCAGCACATCCGTATCTGCATCACACGGGACAATCTTGTGCCCCCCGGACAACCGTTCTACTGCCTCAGTGCAGAGGGCTTGCTCAATACCCACTGCTGCTACACAGACTACTGCAACAGCATTGACCTCAAAGTACCCTCAGGTGAGAAAGTCACAACTCAGTCAGGACTCGGGGGAGGCTATGGCCCTGGTGGGACATGGGTGCTGGTGGAACTAGTCGCTGTGATTGCAGGGCCACTGTTCCTGctgtgtctgctgctgctgatgtgtATGTTCCTGTATCAGTACCACCAGCGGGCCTACAGCCACAGGCAGCGATTGGAAGTGGAGGACCCCTCCTGTGACCACCTCTACATGGCCAAAGACAGGACCCTGCAGGACCTTATATACGATCTGTCCTCATCTGGTTCAGGCTCCGGTCTGCCTCTGTTTGTCCAGCGAACCGTGGCGCGAACAATTGTCCTCCAAGAGATCATTGGTAAAGGGCGTTTCGGGGAGGTGTGGCGAGGACGTTGGAGGGGCGGTGATGTGGCGGTGAAGATCTTCTCATCCAGAGAGGAGCGCTCCTGGTTCCGTGAGGCTGAAATCTATCAGACCATTATGCTCCGCCATGAAAACATCCTGGGCTTTATAGCTGCTGACAACAAagACAATGGCACTTGGACCCAGCTGTGGTTGGTGTCGGACTACCATGAGCATGGCTCTCTGTTTGACTACCTGAATCGCTACTCTGTCACTACTGAAGGAATGATCAAACTGGCACTGTCAGCTGCCAGTGGCCTGGCACATCTGCACATGGAGATTCTAGGAACACAAGGAAAGCCAGGTATCGCGCACAGAGACCTGAAGTCCAAGAACATCCTCGTGAAGAAGAACTGCACCTGTGCCATCGCTGACCTGGGCTTGGCTGTCCGTCATGACTCTGCAACAGACACCATCGATATTGCGCCCAATCAGAGGGTGGGCACCAAGAGGTATATGGCTCCAGAGGTTCTGGATGAGACTATCAACATGAGACACTTTGACTCATTCAAATGTGCTGATATCTATGCTTTGGGGCTGGTCTACTGGGAGATTGCATGCCGCTGTAATAGTGGAGGTATCCATGAAGAGTACCAGCTGCCCTACTATGACCTGGTACCTTCTGACCCTTCCATAGAGGAGATGAGAAAGTTGGTGTGTGACCAAAAAATACGACCCAACATCCCCAATTGGTGGCAGAGCTACGAGGCCTTGCGGGTTATGGGCAAAATCATGAGGGAGTGTTGGTATGCTAACGGTGCTGCACGCTTGACGGCCCTGCGCATCAAGAAGACCCTCTCCCAGCTCAGCGTTCAAGAGGACATTAAAGTCTGAGCAGTCAGCAGAGCGCTGAGAAAGAGCACTGAGCAAGAGCCGACTTCAGACTGTAGGACACTGAGAGGAGGTGGCGGGGCCTTCTACAAAGAACGCACAGAGTAAGAGAATATGATGGAGATTCGCACTTTGTAAAATATTACTACATAGACATTCCTGCCAGTTTTGAAGCCACTTGATTTTTGACAAACCCTACCTCGCTTACCCAGCCAAACTACCAAGAACACCTTTCCTGTCCTCAGCTACTGCTGCCCTTGTTGTTCCTTTCTATATTCCGTACTATTGAGGATCCTTGGATTTCCTGTGTACTTGTATGCAATCGATAACAGGATAAGTAATTAACcatttaacattttgaaaatcagttGCTGATATTTCCTCAAAGTCTCTTTGATCACAGTCACTTAATAGTTAACAAACAGTATTTTGCTCTTTTTGTCTTTGAAAGGGGGCAAGCTGGGAGGGTTAGGAATGTTTTTAACTTacttttttctgttatttaaatgACTAGATCTTGTGTGGCTATTGTGCAGGTTTCTCTGTCTCACCTACAGCATACAGGCACATCACAAACTGCTTAGAAATCCTTGAAAGACAATAATCCATCTGGTTCTGCTACAGCTGTGTTGTTGAGTTGTCTGCAGATAACCATGTAAGCATGTACAAAGCAGTTGAGGAAGTTTGTGTAAATGCAGCCCATTTGCTTTCAACAAGGTGTTTTAAGACTTTGAAGTCACTGGAGCGTAAGTGCAACTTGTCAAACATGATTTGGCCTTTGGACCACTTGCCTGGAGCCCTTCCATAAGCTGTTGTAAACCTCAGGTTTTCcttatgtttttgtcagtttagAACCATGTTAACCACGTTATTTACAATGTTAAATACAAATGTAGGATTATTAAGCAAAAATGCATTTCACTTGGACAGTACATGTAGAGCAACCGCTGCCAGGCACTTGATTTTTTTAGCTGACACACTCGCTGGCTTCAGATTGGGACACTTCTTGCAGAAAACACATGTATAATATTTAAATGGTTGTATTCCAATCTGATTGTCTCTCGATAGACCATAACCTGCCATGAGAGTAAACATTGCTCCAGCCCCTCAGATAAACTGGTATACACAACATTCTGATAAACCTTTCGCCCTTTGCAGCAGCCAATACTATTTACACTGTACTTTAAATACAGggcaaaaatgttttatttttaatacactAACTTCAGGAATCTGAATAatagtttgtttttatgttaattttTGTATATTGTCAAAGCATGTCCAATGTTCTTTTCCATTCAGGGTGCATTTTCCCTGGCCAAGTATAACTACTGCACATACAATAGCTTTTTAAGGTGATACttgtgtaaataaatgtatgttGGTACTTAGGTTATGTTTTAGATGGTTAAATCTTTTATATCAGCTTTTTGGTTGGTTGGAAGAAAATTACTTCTGTCTTGACTCTTGCTGTAATATTTGACCTCTGAAGTGACATTACTGGATGTGTCAGACACACTGCTGATGCTGACTTTCTCCTATAGCCCTCTACTACTGCAGAGCAGTATTTAATTCTTAATCAATGTTTTCCCCTCACAACTCCTTTTGTTCACCATACATTACCTCCTTAATGTGCAAATTGTATGTGGATTGTTTCCATCAAGCTACCATTGTCAGAAACCACTgtctacattttatttgttttcaggAAAAAAGCTGCACTTTTGTCTTTAGCTGTAGCCAAATTCAATAGgtactgtctgtgtgtagtcTTTCCCATGCTATTTATATTTGTATGCTGTGagtctatataaaagcctgAAAGGCCACATGTGCACTACTACTGACCTTGCAGCATTAAAACCAAATTGTTGATGAGAACAACAATGAGAATGTTTATACAAATCATGCCAACCAGTTGCAGTACAATTTAACTGGAAACTGTAAAGAGAGTCTGACTTTTTCTTTGAGAGAAGAAATGTTGAAACTAAATACTACTAAAATGTCTCAATGCTGTCTCACAAATGTGTTTGACCAATACTTAAAATCACTTGCTCACTGCACTGTATTGTATTAGTCTAACAGGATGTTTGTAAGAACGAAAAGACTGCCCTTGATGCTGTTGTTTTTGACTGTGGAGCTCTACTGTTTGATAGGTAGTGTAGTGTTAACCATATTTATACACTAAAGGGGCATGCTTGTCAAATTGTATCTGCCTTACAATGTATACAAATGCATAGTGTATTTAAGGTTTTGATACCTTGTTCAAAGTATACTCATGGATAATTAGGAGGGTGTGAGTCAAAGAAATTAGGTATTATTCTACAGTTTGTGACAACTCCCAAGTCTCTGTCAGGTCATGGCAAAGAAACAACAGcatctatgtaaaaaaaaaaaacttcaggaCTTCAATCATGTACCTTCTAATATAGAGTAATAAATGCAATTGTTTTCCAA
>XM_039796825.1
GCCTGCTGGTGGAGAATGTTAGTAAACTGTTCACTGACAGCCTGGTTAGCTGTCATCATCACGCCTCGCCACCTcttacgttagctagctaactaaatgtcttaatGCGATGAACCGGGAATTTATTGATCATGGCTAACCTACGGATTTCGTTAGCTGCCTTGGTTGTTCAGGTCGTCCTGTACAGAAACTGCGAGGCTCTGTGGTGTAACTGCACCACTGCCCAGTGCGAGAAGACTGGCTACCAGTGTGAGACCGATGGAGCCTGCAAGGCCTCCACTTCCTTAATTGATGGCCAAGAGCAGCACATCCGTATCTGCATCACACGGGACAATCTTGTGCCCCCCGGACAACCGTTCTACTGCCTCAGTGCAGAGGGCTTGCTCAATACCCACTGCTGCTACACAGACTACTGCAACAGCATTGACCTCAAAGTACCCTCAGTCACAACTCAGTCAGGACTCGGGGGAGGCTATGGCCCTGGTGGGACATGGGTGCTGGTGGAACTAGTCGCTGTGATTGCAGGGCCACTGTTCCTGctgtgtctgctgctgctgatgtgtATGTTCCTGTATCAGTACCACCAGCGGGCCTACAGCCACAGGCAGCGATTGGAAGTGGAGGACCCCTCCTGTGACCACCTCTACATGGCCAAAGACAGGACCCTGCAGGACCTTATATACGATCTGTCCTCATCTGGTTCAGGCTCCGGTCTGCCTCTGTTTGTCCAGCGAACCGTGGCGCGAACAATTGTCCTCCAAGAGATCATTGGTAAAGGGCGTTTCGGGGAGGTGTGGCGAGGACGTTGGAGGGGCGGTGATGTGGCGGTGAAGATCTTCTCATCCAGAGAGGAGCGCTCCTGGTTCCGTGAGGCTGAAATCTATCAGACCATTATGCTCCGCCATGAAAACATCCTGGGCTTTATAGCTGCTGACAACAAagACAATGGCACTTGGACCCAGCTGTGGTTGGTGTCGGACTACCATGAGCATGGCTCTCTGTTTGACTACCTGAATCGCTACTCTGTCACTACTGAAGGAATGATCAAACTGGCACTGTCAGCTGCCAGTGGCCTGGCACATCTGCACATGGAGATTCTAGGAACACAAGGAAAGCCAGGTATCGCGCACAGAGACCTGAAGTCCAAGAACATCCTCGTGAAGAAGAACTGCACCTGTGCCATCGCTGACCTGGGCTTGGCTGTCCGTCATGACTCTGCAACAGACACCATCGATATTGCGCCCAATCAGAGGGTGGGCACCAAGAGGTATATGGCTCCAGAGGTTCTGGATGAGACTATCAACATGAGACACTTTGACTCATTCAAATGTGCTGATATCTATGCTTTGGGGCTGGTCTACTGGGAGATTGCATGCCGCTGTAATAGTGGAGGTATCCATGAAGAGTACCAGCTGCCCTACTATGACCTGGTACCTTCTGACCCTTCCATAGAGGAGATGAGAAAGTTGGTGTGTGACCAAAAAATACGACCCAACATCCCCAATTGGTGGCAGAGCTACGAGGCCTTGCGGGTTATGGGCAAAATCATGAGGGAGTGTTGGTATGCTAACGGTGCTGCACGCTTGACGGCCCTGCGCATCAAGAAGACCCTCTCCCAGCTCAGCGTTCAAGAGGACATTAAAGTCTGAGCAGTCAGCAGAGCGCTGAGAAAGAGCACTGAGCAAGAGCCGACTTCAGACTGTAGGACACTGAGAGGAGGTGGCGGGGCCTTCTACAAAGAACGCACAGAGTAAGAGAATATGATGGAGATTCGCACTTTGTAAAATATTACTACATAGACATTCCTGCCAGTTTTGAAGCCACTTGATTTTTGACAAACCCTACCTCGCTTACCCAGCCAAACTACCAAGAACACCTTTCCTGTCCTCAGCTACTGCTGCCCTTGTTGTTCCTTTCTATATTCCGTACTATTGAGGATCCTTGGATTTCCTGTGTACTTGTATGCAATCGATAACAGGATAAGTAATTAACcatttaacattttgaaaatcagttGCTGATATTTCCTCAAAGTCTCTTTGATCACAGTCACTTAATAGTTAACAAACAGTATTTTGCTCTTTTTGTCTTTGAAAGGGGGCAAGCTGGGAGGGTTAGGAATGTTTTTAACTTacttttttctgttatttaaatgACTAGATCTTGTGTGGCTATTGTGCAGGTTTCTCTGTCTCACCTACAGCATACAGGCACATCACAAACTGCTTAGAAATCCTTGAAAGACAATAATCCATCTGGTTCTGCTACAGCTGTGTTGTTGAGTTGTCTGCAGATAACCATGTAAGCATGTACAAAGCAGTTGAGGAAGTTTGTGTAAATGCAGCCCATTTGCTTTCAACAAGGTGTTTTAAGACTTTGAAGTCACTGGAGCGTAAGTGCAACTTGTCAAACATGATTTGGCCTTTGGACCACTTGCCTGGAGCCCTTCCATAAGCTGTTGTAAACCTCAGGTTTTCcttatgtttttgtcagtttagAACCATGTTAACCACGTTATTTACAATGTTAAATACAAATGTAGGATTATTAAGCAAAAATGCATTTCACTTGGACAGTACATGTAGAGCAACCGCTGCCAGGCACTTGATTTTTTTAGCTGACACACTCGCTGGCTTCAGATTGGGACACTTCTTGCAGAAAACACATGTATAATATTTAAATGGTTGTATTCCAATCTGATTGTCTCTCGATAGACCATAACCTGCCATGAGAGTAAACATTGCTCCAGCCCCTCAGATAAACTGGTATACACAACATTCTGATAAACCTTTCGCCCTTTGCAGCAGCCAATACTATTTACACTGTACTTTAAATACAGggcaaaaatgttttatttttaatacactAACTTCAGGAATCTGAATAatagtttgtttttatgttaattttTGTATATTGTCAAAGCATGTCCAATGTTCTTTTCCATTCAGGGTGCATTTTCCCTGGCCAAGTATAACTACTGCACATACAATAGCTTTTTAAGGTGATACttgtgtaaataaatgtatgttGGTACTTAGGTTATGTTTTAGATGGTTAAATCTTTTATATCAGCTTTTTGGTTGGTTGGAAGAAAATTACTTCTGTCTTGACTCTTGCTGTAATATTTGACCTCTGAAGTGACATTACTGGATGTGTCAGACACACTGCTGATGCTGACTTTCTCCTATAGCCCTCTACTACTGCAGAGCAGTATTTAATTCTTAATCAATGTTTTCCCCTCACAACTCCTTTTGTTCACCATACATTACCTCCTTAATGTGCAAATTGTATGTGGATTGTTTCCATCAAGCTACCATTGTCAGAAACCACTgtctacattttatttgttttcaggAAAAAAGCTGCACTTTTGTCTTTAGCTGTAGCCAAATTCAATAGgtactgtctgtgtgtagtcTTTCCCATGCTATTTATATTTGTATGCTGTGagtctatataaaagcctgAAAGGCCACATGTGCACTACTACTGACCTTGCAGCATTAAAACCAAATTGTTGATGAGAACAACAATGAGAATGTTTATACAAATCATGCCAACCAGTTGCAGTACAATTTAACTGGAAACTGTAAAGAGAGTCTGACTTTTTCTTTGAGAGAAGAAATGTTGAAACTAAATACTACTAAAATGTCTCAATGCTGTCTCACAAATGTGTTTGACCAATACTTAAAATCACTTGCTCACTGCACTGTATTGTATTAGTCTAACAGGATGTTTGTAAGAACGAAAAGACTGCCCTTGATGCTGTTGTTTTTGACTGTGGAGCTCTACTGTTTGATAGGTAGTGTAGTGTTAACCATATTTATACACTAAAGGGGCATGCTTGTCAAATTGTATCTGCCTTACAATGTATACAAATGCATAGTGTATTTAAGGTTTTGATACCTTGTTCAAAGTATACTCATGGATAATTAGGAGGGTGTGAGTCAAAGAAATTAGGTATTATTCTACAGTTTGTGACAACTCCCAAGTCTCTGTCAGGTCATGGCAAAGAAACAACAGcatctatgtaaaaaaaaaaaacttcaggaCTTCAATCATGTACCTTCTAATATAGAGTAATAAATGCAATTGTTTTCCAA

Function

NR:

description
PREDICTED: activin receptor type-1B-like

GO:

id name namespace
GO:0007178 transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:0006468 protein phosphorylation biological_process
GO:0016020 membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0005024 transforming growth factor beta-activated receptor activity molecular_function

KEGG:

id description
K13567 ACVR1B, ALK4; activin receptor type-1B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039796824.1 True 4116 mRNA 0.44 9 15824383 15833934
XM_039796825.1 False 4106 mRNA 0.44 9 15824384 15833934

Neighbor

gene id symbol gene type direction distance location
ankrd33ab LOC103367911 coding upstream 818 15818623 ~ 15823565 (+)
b4galnt1b b4galnt1,LOC104942127 coding upstream 34478 15772189 ~ 15789905 (+)
tac3b NA coding upstream 82714 15736545 ~ 15741669 (+)
LOC120556777 gpr84,LOC108235641 coding upstream 108888 15713249 ~ 15715495 (+)
LOC120556700 NA coding upstream 113493 15710216 ~ 15710890 (+)
LOC120557571 ikzf4 coding downstream 18063 15851997 ~ 15859771 (+)
arf3b arf3,ARF3,arf3a,LOC102781726,LOC106921537,LOC106954774,LOC104956878 coding downstream 37784 15871718 ~ 15876860 (+)
erbb3a erbb3 coding downstream 45856 15879790 ~ 15899901 (+)
pa2g4a pa2g4,LOC104933448,LOC102793326 coding downstream 69566 15903500 ~ 15913619 (+)
vhl vhl,LOC104941408 coding downstream 108830 15942764 ~ 15945552 (+)
G38885 LOC104942130 non-coding upstream 62068 15760792 ~ 15762315 (+)
G38852 NA non-coding upstream 69324 15673979 ~ 15755059 (+)
G38860 NA non-coding upstream 94983 15727979 ~ 15729400 (+)
G38858 NA non-coding upstream 102199 15718996 ~ 15722184 (+)
G38832 NA non-coding upstream 179984 15644061 ~ 15644399 (+)
G38948 NA non-coding downstream 80605 15914539 ~ 15914901 (+)
LOC120557201 NA non-coding downstream 85451 15919385 ~ 15921622 (+)
G38966 NA non-coding downstream 150690 15984624 ~ 15985096 (+)
G39052 LOC101067125,LOC103386161,LOC103365890 non-coding downstream 361445 16195379 ~ 16195784 (+)
G39076 LOC104930492,LOC103358728,LOC102300171,LOC101465142 non-coding downstream 401080 16235014 ~ 16251725 (+)
G38834 NA other upstream 176532 15645511 ~ 15647851 (+)
calcoco1b LOC104959845,LOC103376572 other upstream 949924 14865059 ~ 14874459 (+)
znf740a LOC107385642,LOC101469799,LOC102214350,LOC102304359,LOC103376569,LOC107082105,LOC100709046 other upstream 967314 14765297 ~ 14857069 (+)
G38517 NA other upstream 1007947 14808352 ~ 14816436 (+)
cdk4 LOC107684003,LOC107701179 other upstream 1067024 14740609 ~ 14757359 (+)
crbn crbn,LOC102793823 other downstream 89387 15923321 ~ 15937097 (+)
ccdc174 ccdc174 other downstream 131468 15965402 ~ 15974237 (+)
eefsec eefsec,LOC102787825 other downstream 215744 16049678 ~ 16060330 (+)
LOC120557902 rab7,rab7a,LOC102230535,LOC106583206,LOC105017191,LOC101061812 other downstream 315191 16149125 ~ 16158362 (+)
G39104 LOC103385912,LOC104930488,LOC103358732,LOC101079922 other downstream 599304 16433238 ~ 16435229 (+)

Expression


Co-expression Network