trnt1 (trnt1)


Basic Information

Item Value
gene id trnt1
gene name trnt1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 6529451 ~ 6537424 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039796837.1
AACCTCACACTATTGGTCAGCAAACGCACTTTACCGAAACACTTCCTGCAATGCTTTATGGCAGAGAAATATCAATGAGAAATATAGATAACGGCGTTGTctggtaaacaaacaaaaaaaacttctaTTTAAGTTGCAGATGTGGAGCAGGATATTGAGTCCTCGTGTGATTGGTAGAACAGGTTTCTGTTGGAGGAGTCTTTTCACCATGCAGCTGAAGACCAGTGAGTTCCAGTCTCTGTTCACTGATGGGCTGAGTGGATTAGCAGaggtGTTTGAGAAGCAGCAGCATGAGCTGAGGATAGCTGGAGGTGCCGTACGAGACCTGCTGTCTGGGAAGCGGCCTGAAGATGTGGACTTTGCCACCACAGCCACTCCAGAGGAGATGAAGCGAATGTTCCAAACAGCTGGCATCCGGATGATCAACAATAAAGGAGAGAAGCATGGGACCATAACAGCAAGACTACACAATGAGAACTTTGAGGTGACCACGTTGCGAGTGGATGTTCAGACAGATGGACGTCATGCAGAGGTGGAATTCACCACTGACTGGCAGAAAGACGCTGAGCGGAGAGACCTCACCATcaattccatgtttttagGGCTTGATGGCACATTATATGACTATTTCAAAGGATACGAAGACCTGCAGAACCGAAAAGTTCGGTTTGTTGGCAGTGCTGAACAAAGAATCCAAGAGGACTACTTGAGGATACTGCGTTATTTCAGGTTCTACGGCAGGGTGGCCCTGGCGCCAGATGACCATGAGCCTGAGACGCTGGTTGCTATTAGGGAAAATGGTCGTGGACTTGCAGCTATATCGGGAGAACGGATTTGTGTGGAACTAAAGAAGATGGTTGTTGGTAACCATGCTGATCATCTGCTGGAGCTGATGTACAGTCTGGAACTGGCCCAGTACATAGGTTTACCTCCAGATGGCGATGTTGAGGAGATGAAGCGAGTATGGCAGAACGCCAAAGACCACTCTCCCAAACCTATGACCATCCTGGCTGCTCTCTTCCGCCGCCCAGAGGAGGTGGAAAAGATGGACCTCCGGCTGAAGGTGTCCAGGGAGGAGAAGACTTTGGCTCTGTTCTTGGTCAAATACAGACGGGAGCTCCGCAAGAGCGAAGATGACCCTGACAGCCTTAAACCCTTCACTGACTTCATCATCGACAGTCGGGAGCTGGATTCCCAGAGTAAAGTGTGTGAGCTATTGAAGTATCAAGGTGAGGAGAAACTGCTGGCGGAGCTCTGCAGGTGGTCCATCCCTCGCTTCCCCGTCAGTGGTCACGACCTGAGGAGGATGGGGGTCACGTCGGGCAAGGAGATAGGTGCCACCTTACAGGAGCTCCGCGACATCTGGAAGAAAAGTCGCTATCAGATGGACAAAGATGAACTCCTAAGTTACGTAAAGTCTTAAATGAGGAGAAAAGTGGATGGGTTTTTGTGTCGGACAATAATGATCTGGACACTTACCGCTGTAATCGTGTTGCTCACAGGTATTGATTGAGCAGACTGCTGCACATTGTTGAGAAAGGACATTACAAGAACTGAAACATGCATGGCCACTGATGACTGCAATTTCATATTAAATTAGCCCAATACCACTTTTGTTCTCCTGCATCACCAGGGGTTAAAGTGGGATCTGGCAGAACAAATGTTACACTTTAAAGTTTCTTACTGCTTTTAAAGTCTCTATCCACTACTCGGTACTTAAAGAAAACTCACTTTTAAAGCTGTTAAACCTGTTACTCCCATTATTTCCTTATTCCAAAACAGTGGTGATGAAAATCAGGAGCAATTGAGTTTTCATCAAAACAACATTTTGACTGACTATTAACTGCATCCCAAATTAATCAGAGCACCCAAGGCCAAATTGCATCCCAAGGTACCATTTGACCGGTTGCTGAAAAGCatttaaaggctgttttatctAACAGTCACTCCACATAAAACACACTGGGGCTACATTCACTCCAGCTAACTCGGTGTCACAGCTGCGACCATATAAGAGAATGTACTACTAGACAATGACTGCTGATCATATGTGTTATTACAGAGCTCTATGAAATTCCTTAGATAAACAGCTGTTCTACCGATTCTCAGTTGCTATAGTAAATTATAAATTTCATCGTTAAAACCATAATGGAAAGCAGCAGTATGGTTTTGATTGTTTTAGTTTTCTCCTCGGTTTAACTGCAGTATTTCTTTGCCATGTTTTCTGAACAGAAAATGCTCTATAAAAAGGTTCTACTTTT
>XM_039796838.1
GTCTGATGAAACCTCACACTATTGGTCAGCAAACGCACTTTACCGAAACACTTCCTGCAATGCTTTATGGCAGAGAAATATCAATGAGAAATATAGATAACGGCGTTGTctgATGTGGAGCAGGATATTGAGTCCTCGTGTGATTGGTAGAACAGGTTTCTGTTGGAGGAGTCTTTTCACCATGCAGCTGAAGACCAGTGAGTTCCAGTCTCTGTTCACTGATGGGCTGAGTGGATTAGCAGaggtGTTTGAGAAGCAGCAGCATGAGCTGAGGATAGCTGGAGGTGCCGTACGAGACCTGCTGTCTGGGAAGCGGCCTGAAGATGTGGACTTTGCCACCACAGCCACTCCAGAGGAGATGAAGCGAATGTTCCAAACAGCTGGCATCCGGATGATCAACAATAAAGGAGAGAAGCATGGGACCATAACAGCAAGACTACACAATGAGAACTTTGAGGTGACCACGTTGCGAGTGGATGTTCAGACAGATGGACGTCATGCAGAGGTGGAATTCACCACTGACTGGCAGAAAGACGCTGAGCGGAGAGACCTCACCATcaattccatgtttttagGGCTTGATGGCACATTATATGACTATTTCAAAGGATACGAAGACCTGCAGAACCGAAAAGTTCGGTTTGTTGGCAGTGCTGAACAAAGAATCCAAGAGGACTACTTGAGGATACTGCGTTATTTCAGGTTCTACGGCAGGGTGGCCCTGGCGCCAGATGACCATGAGCCTGAGACGCTGGTTGCTATTAGGGAAAATGGTCGTGGACTTGCAGCTATATCGGGAGAACGGATTTGTGTGGAACTAAAGAAGATGGTTGTTGGTAACCATGCTGATCATCTGCTGGAGCTGATGTACAGTCTGGAACTGGCCCAGTACATAGGTTTACCTCCAGATGGCGATGTTGAGGAGATGAAGCGAGTATGGCAGAACGCCAAAGACCACTCTCCCAAACCTATGACCATCCTGGCTGCTCTCTTCCGCCGCCCAGAGGAGGTGGAAAAGATGGACCTCCGGCTGAAGGTGTCCAGGGAGGAGAAGACTTTGGCTCTGTTCTTGGTCAAATACAGACGGGAGCTCCGCAAGAGCGAAGATGACCCTGACAGCCTTAAACCCTTCACTGACTTCATCATCGACAGTCGGGAGCTGGATTCCCAGAGTAAAGTGTGTGAGCTATTGAAGTATCAAGGTGAGGAGAAACTGCTGGCGGAGCTCTGCAGGTGGTCCATCCCTCGCTTCCCCGTCAGTGGTCACGACCTGAGGAGGATGGGGGTCACGTCGGGCAAGGAGATAGGTGCCACCTTACAGGAGCTCCGCGACATCTGGAAGAAAAGTCGCTATCAGATGGACAAAGATGAACTCCTAAGTTACGTAAAGTCTTAAATGAGGAGAAAAGTGGATGGGTTTTTGTGTCGGACAATAATGATCTGGACACTTACCGCTGTAATCGTGTTGCTCACAGGTATTGATTGAGCAGACTGCTGCACATTGTTGAGAAAGGACATTACAAGAACTGAAACATGCATGGCCACTGATGACTGCAATTTCATATTAAATTAGCCCAATACCACTTTTGTTCTCCTGCATCACCAGGGGTTAAAGTGGGATCTGGCAGAACAAATGTTACACTTTAAAGTTTCTTACTGCTTTTAAAGTCTCTATCCACTACTCGGTACTTAAAGAAAACTCACTTTTAAAGCTGTTAAACCTGTTACTCCCATTATTTCCTTATTCCAAAACAGTGGTGATGAAAATCAGGAGCAATTGAGTTTTCATCAAAACAACATTTTGACTGACTATTAACTGCATCCCAAATTAATCAGAGCACCCAAGGCCAAATTGCATCCCAAGGTACCATTTGACCGGTTGCTGAAAAGCatttaaaggctgttttatctAACAGTCACTCCACATAAAACACACTGGGGCTACATTCACTCCAGCTAACTCGGTGTCACAGCTGCGACCATATAAGAGAATGTACTACTAGACAATGACTGCTGATCATATGTGTTATTACAGAGCTCTATGAAATTCCTTAGATAAACAGCTGTTCTACCGATTCTCAGTTGCTATAGTAAATTATAAATTTCATCGTTAAAACCATAATGGAAAGCAGCAGTATGGTTTTGATTGTTTTAGTTTTCTCCTCGGTTTAACTGCAGTATTTCTTTGCCATGTTTTCTGAACAGAAAATGCTCTATAAAAAGGTTCTACTTTT

Function

symbol description
trnt1 Predicted to enable RNA binding activity and nucleotidyltransferase activity. Acts upstream of or within several processes, including tRNA processing; thigmotaxis; and visual behavior. Is expressed in brain; heart; pectoral fin; retina; and trunk. Used to study sideroblastic anemia with B-cell immunodeficiency, periodic fevers, and developmental delay. Human ortholog(s) of this gene implicated in sideroblastic anemia with B-cell immunodeficiency, periodic fevers, and developmental delay. Orthologous to human TRNT1 (tRNA nucleotidyl transferase 1).

NR:

description
CCA tRNA nucleotidyltransferase 1, mitochondrial isoform X1

GO:

id name namespace
GO:0042780 tRNA 3'-end processing biological_process
GO:0009022 tRNA nucleotidyltransferase activity molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039796837.1 True 2261 mRNA 0.45 8 6529460 6537424
XM_039796838.1 False 2234 mRNA 0.46 8 6529451 6537424

Neighbor

gene id symbol gene type direction distance location
LOC120556937 LOC103355436 coding upstream 8290 6466816 ~ 6521161 (+)
eevs LOC104922196,LOC103355445,LOC104966975,LOC105934428 coding upstream 102857 6414966 ~ 6426594 (+)
LOC120557997 eif4e3,LOC103355441 coding upstream 396812 6118632 ~ 6132639 (+)
shq1 shq1 coding upstream 515497 5957271 ~ 6013954 (+)
pdzrn3b pdzrn3 coding upstream 624288 5793732 ~ 5905163 (+)
si:dkey-178o16.4 LOC103355435,LOC104921970,LOC104952562 coding downstream 117 6537541 ~ 6541431 (+)
lrrn1 lrrn1 coding downstream 67946 6605370 ~ 6619215 (+)
itpr1b LOC102304252,LOC102203222,LOC100692694,LOC103355429 coding downstream 110891 6648315 ~ 6753630 (+)
bhlhe40 bhlhe40,LOC104959416 coding downstream 219520 6756944 ~ 6760482 (+)
LOC120556653 naaa coding downstream 229588 6767012 ~ 6770275 (+)
G36231 mitfa,mitf-a,LOC100534525 non-coding upstream 96342 6429507 ~ 6433109 (+)
G36201 gpr27,LOC103355443,LOC102784210 non-coding upstream 415138 6111677 ~ 6114313 (+)
G36175 NA non-coding upstream 473225 6055244 ~ 6056226 (+)
G36170 NA non-coding upstream 508328 6020853 ~ 6021123 (+)
G36145 NA non-coding upstream 834505 5694393 ~ 5694946 (+)
G36288 NA non-coding downstream 6043 6543467 ~ 6544074 (+)
G36299 NA non-coding downstream 36722 6574146 ~ 6574347 (+)
LOC120556885 NA non-coding downstream 41556 6578980 ~ 6581303 (+)
G36353 NA non-coding downstream 235312 6772736 ~ 6773170 (+)
G36368 NA non-coding downstream 410655 6948079 ~ 6951049 (+)
foxp1b foxp1 other upstream 223308 6139463 ~ 6306143 (+)
prok2 prok2,LOC103355444 other upstream 422299 6104613 ~ 6107152 (+)
rybpb rybp other upstream 474235 6035072 ~ 6055216 (+)
G36156 LOC103374102 other upstream 605051 5920924 ~ 5924400 (+)
cdk5rap1 cdk5rap1 other upstream 1595287 4911699 ~ 4934164 (+)
setmar LOC100698471 other downstream 97856 6635280 ~ 6638523 (+)
si:dkey-245f22.3 NA other downstream 645775 7183199 ~ 7187214 (+)
G36458 LOC100304472,LOC107385856 other downstream 672572 7209996 ~ 7272368 (+)
hcfc1a hcfc1,LOC102799381,LOC102206223 other downstream 751483 7288907 ~ 7306343 (+)
G36744 NA other downstream 1690338 8227762 ~ 8228720 (+)

Expression


Co-expression Network