sypl2a (LOC103367888)


Basic Information

Item Value
gene id sypl2a
gene name LOC103367888
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 36182592 ~ 36210487 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039796861.1
TATTGTGGTTAGTTTGACAGCGGTTCAGTTGTACAGAGTTTGACAGTAGTCAGTAGTAGTTGTCTCCTGCTTGTCTATCGCCTGCTGAGAGTCCGTAACGTTAGCTGTTGTAACGACGTTCGAATGCAAACGGAGTAACAACGAAACGGACAGCTTTATGAGATAAATACAGACAGCTTTGTAGTTGTTGCACGTCTCAATGGACACTGTTCAGAAATTGGTGTCTGGATTTTCTCTGGACCTGGGACCATTGAAAGAACCTCTTGGATTTATTCGTGTCCTAGAATGGGTCTTCACCATCTTTGCCTTTGCCACCACTGGAGGTTACTCTGGGACATCCCACTTTACAGTCAAATGCCCAGGAGGAACCCCGGAAGAGACACCTGTAGGGCCTGTGTTTGACTACCCATTCAGGTTGCCAGCACACCCGTATGACATACCGACATGCAACGGCACTGATGTCCGTACGAACTACCTGCAAGGCGACTACTCCTCCTCGGCagagttctttgtgtgtgttggtgtgtttggGTTCCTTTATTGCACCGCCACATTGATCCTCTACCTGGGCTACCAGAACGTCTACCGCCAGACCACCCGTGGTCCCATCATAGACCTGGTGCTGACCGCTGCCTTTGCCTTCTTGTGGCTCGTGTCGTCCTCAGCCTGGGGCAAAGGCCTGACTGATGTTAAGTGGGCCACTAACCCCGAGCACCTAGTGGAGTCATGCAAAGACCTCTGTCAGCCAGGAGAGTTTCCTTCCATGGGCCGCCTCAATGCCTCTGTGATATTTGGCTTTTTGAACATGATCCTGTGGGCAGGGAACTGCTGGTTCATCTACAAGGAGACTCCTTTCCACAAGGATCCCAACCCACCAGCCACCATGGAGGAAGGAGGGCCCCCTGAGCCCTAGCCACGTCACTGAGGCTCCTCAAGCATAGCCCCGTGCCCACAGCACAAACGCTCTGTGCCCAACACTGGTCTCTGATGTTAACCtgcagaaatggaaacaaaAGGAAGGCAATTGTCCTAAATACCCGCTATACCTCCCAACACGTCGGAGCTATTTTTCAGTTACGGGTCTTTACGTAGCTCAAGTTAACCTTAGTCCCCAATGACTGAGCAaccctttatttttattttaaatctgcCATCACTGTATGTATTTGGTGTTCAGAACAGCAGGCCTGCAGTGCATTTGCTTCCACATTAGCACACTGTCCTCAGCTGATGTCCGCCCTTCAGGGAGCCACCTAGTGATGAAATTGTGATTTAAGAACCCAGCATCTCTACTGGTCTTCAACCAGagaaaagctggaagttgaAAGCAAACATCCCTCACACCCAGTAAAAGCAAGTGTTTCCATAAGAAACAAAATCCAGAAGCAAACTTTTTAGGTGGGAGCAAATGCACCCCTGGGGTTCAGTCCAGTAAGGGCCTGCTCTTCTTCCAATATGTAATCAGTAAGAGAAAATGCTACAGTACAGATCCCAAGTACTGTATTTCTAAACATGTCAGTCACTTCAATTTCAATAGATGAGTCATAGCATGAGGGGCAAAATATGCTGAATGCTATTTTTCTCCTGTTAAAGCAACAACTGATACCAGAGCCCTGCTCAATAATCGGACTAAGCCAtggtttctcttcttttctcatcTCTGCCACTGAGGCACCAGACCAACTAACCATTAAGTTAACCGCCATGCCGTTTCCCCACCAATGTTCTAatccactgacacacacacttaaatatACTTCATAACCCCATGGGTGTTGCAGTTTCAACACACTTGGAATTTATTGTGCTTAAAAAGAATActaagtaaaaagaaaaaaatcacactaCAATCTACTGCACCTCTGGCAGAGACTTTAATTTTGAACGTGTCATTTTGCGTGATGTTTCAGGTTGGTTGTGACAGGGTTTGCCGCGGCCTTATTTTCAGCCTGTATACAGAACAAGCAGGTTCTCTACATGTTTACTCCAGTATCTGTTGTACATGCCGTTACAGTGGAAGGAACTGATAAATGTCAGGCCAAACCTCAAAATGTTATCATTTACACTACTCCTTAACACTAAGACTCATTCTTGTTTGTGCAATCTTTTGCGAAAGGTGACTTGCAGCGactttatttatatacagttcatttgtatttttatctACATTAATTGGTCCGttgcatatttttaaaaccaatGTTGGGTTTCTGTTTGTATTTCCCAAATAAGTGTCGGTGTGCAGCTTCTCCTTGATTTGTTTTGTAATGTCAGATTTGCTGTTAAATGTGTTTATCCACCGAGTAGCTTTAGACCTGGTCGTGCGATGATAAATAGTTTAACTAACAAAAGTGGCAAACTGTGGTTGCCAGATTTATGTACTCTTTCTCTATTTCTTAATGCCCATAGTTCTGCTCTATATGTAACTTTACAGCCAATGCCGTACATTAGGTTTTGTATTGAATTATTGTCATTGCACTAAGAGGGATCTAAGGATCTCTATGAAGTAACTGTTTTGAGTTATTGGGCCACCTGTGCAGCTGTTTTATTCACCAACTTAGCCTCTGTAGGGAAGAAATGAGAGGCTGCATGAGGCACTGTAAGTAAAGTCATATATTTTCCACATCCTATTGAAATTAAACACAATTCGTAAGATGCTTTATCAATTTTAAAAGATAAATCTTATCTTAACTAGAGCACAGTCATAGGTGGGATGTTTATGTAATTGGACTTCATGTATTTAATGCCTTCGTTtgtgcaaaatgaaacaaaatggtTTATCTGTATTGACAAGTGTAAAACATGAGAGCTGGAACTGCTGGA

Function

NR:

description
synaptophysin-like protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039796861.1 True 2823 mRNA 0.44 6 36182592 36210487

Neighbor

gene id symbol gene type direction distance location
LOC120556919 NA coding upstream 662644 35517738 ~ 35519948 (+)
tp53rk tp53rk coding upstream 709266 35470994 ~ 35473326 (+)
LOC120557477 LOC103375199,LOC104930306,LOC101473264,LOC108251201 coding upstream 730273 35426361 ~ 35452319 (+)
LOC120558245 NA coding upstream 742453 35439977 ~ 35440139 (+)
LOC120556789 LOC104930304,LOC100703713,LOC103370810,LOC102215223 coding upstream 863423 35316477 ~ 35319169 (+)
atxn7l2a atxn7l2,LOC103374593 coding downstream 5598 36216085 ~ 36242866 (+)
LOC120557073 LOC103374592,LOC100706250,LOC102300861,LOC101476702,LOC102207203,LOC102780650 coding downstream 33170 36243657 ~ 36249486 (+)
camk1ga LOC108240302,LOC103373651 coding downstream 91459 36301946 ~ 36327932 (+)
LOC120556721 NA coding downstream 156033 36366520 ~ 36368410 (+)
cadpsa LOC103364890 coding downstream 220918 36431405 ~ 36676255 (+)
G44036 NA non-coding upstream 9026 36170653 ~ 36173566 (+)
G44032 NA non-coding upstream 24775 36157554 ~ 36157817 (+)
G44031 NA non-coding upstream 25104 36156811 ~ 36157488 (+)
G44028 NA non-coding upstream 29760 36152478 ~ 36152832 (+)
G44004 nfasc non-coding upstream 201223 35907077 ~ 35981369 (+)
G44044 NA non-coding downstream 190 36210677 ~ 36210973 (+)
G44067 NA non-coding downstream 75550 36286037 ~ 36287296 (+)
G44092 NA non-coding downstream 166484 36376971 ~ 36379468 (+)
G44159 NA non-coding downstream 372040 36582527 ~ 36582888 (+)
G44153 NA non-coding downstream 467805 36678292 ~ 36679296 (+)
trnac-gca_18 NA other upstream 219982 35962539 ~ 35962610 (+)
G43924 NA other upstream 516551 35664143 ~ 35666041 (+)
LOC120556915 NA other upstream 696357 35463772 ~ 35486235 (+)
G43656 NA other upstream 1515410 34665236 ~ 34667182 (+)
LOC120557806 LOC105901862,LOC101061984,LOC103047442 other upstream 2836786 33340284 ~ 33345806 (+)
fezf2 fezf2 other downstream 492768 36703255 ~ 36711295 (+)
plekha6 plekha6 other downstream 1750219 37960706 ~ 38096072 (+)
LOC120557027 NA other downstream 1955695 38166182 ~ 38174494 (+)
G44436 NA other downstream 2402150 38612637 ~ 38612971 (+)
LOC120557667 LOC102775714,LOC103375741 other downstream 2690085 38900572 ~ 38903056 (+)

Expression


Co-expression Network