smug1 (smug1,LOC102792633)


Basic Information

Item Value
gene id smug1
gene name smug1,LOC102792633
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 14857461 ~ 14861776 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039796979.1
AACAACAACATATGGTGAGATTTAGTGCAGAGACAACCTCTCTGAATATTGACAAGACAAAGGAGATGATTGTCAACTTCAGTAGGGCTGGAgcatctcctcctcccccccattCCACAGGTCGATGGCAAGACAGTGTTTTAAGTTCTTGGGGGTGCTCGTCACAGCCAGAACACCACTCCCTGGGGGGAAAAACACCTGCACTTCATTAGAAGGCTAAAGAGAGTTGGTCTGTGCACATCCATCCTCTACAGatgtaggcctaccataaaGTCCATACTGACCTGCTGCATCACTGTTTGGGATGGAAACTGTTCAGCTGCAGACAGGAAGGCCCTGGCAGCGGGTTGTGAAGACAACCCAGCACATCATCACTGGGACAAGTTTCCTGCCATAAAGACCATTTACACAGAAAGGTGTAAAAGAAAAGCCTGCAGCATCATGAAGGACTCCTCTCAGTCCTTTCCATGtctatttgactttttttttttttaaggagttttAGTAAAAATACTGAGCTTGTTGATTGACTTATAGGTTGGAAACAGGATTTGACATAAAGGTTGATGCTTGACCTTGGAAACACATTTCAGTGTCACTGTAAGGCAAAATccactttgttttctttccGGGGGGCCtgaaataatatgaaaaaacaaaggcTGATAGAAAGTAactgaaataaacaaaactaGTTGGTACAGGAATTGGTGGAATGAAATGGCATCTTGGGCCATGGGTATCCCAAGCTTGTAGATTGTGTAAAAACCATTTGGCTATAAGGCCAAAGAGGTAGGTCATCTAAGGGAAGTGCACAGATCTAAAAGGGTTTCCTTTATCTGTGGAAGGTGctgctgcacatacagtacacgtGTGCATTGCTTACACTAATGTCACACCAGAAGGGTCCATGAGTGAGTCTGCATCTGCTCCGGTCAGCGCAATTTAGTGCCATGTTGTTGGCTCAGGTGTGTCTGggcaaaaaaaatgaatatcctTTTGATTCGCTGTAATGACACAAGTGTTGCTGTAGAGGGCGGCAACCGCTTTGAATGCGGTCAGATGACGAATTAGCAGGAAGGCGCAGAGGAAGAAATGACCACTCACTCTAGTCCGAGTCCTCCCAGTCTGAGTCCTCCTATATAGCTCGTCTACATGAGCTTCCAGCACAGTTTACATTGTCAAAACTTTAGTGAAGCTGTTATAACGTATCGTTGATGCTACGTTTTTATCTGACAAACCGGCACTCGTTTAATACGCTTAGAATCCAAAATGTTAGATGCCAATGCATCTGCGAATGACACGGATACGCTCGCTTGTGGAGATGGGGAGAAGGAACTGCCTTTGTGTGAATCAAAGGAGCAGGGTTTTAAACTGGTACAGGAGGTCAGCATGACCCCCTCCTCCAGGTTTCTGCAGGTTGAACTGGAGCTGAACGCCCACCTCCGTCGGCTCACCTTCAGCGAGCCTGTCCGGTACATTTACAACCCGCTGGAGTACGCCTGGGACACCCACCGCTGCTACGTGGAGAAGTACTGTCAGGGCGGACAAAAGATCCTGTTTTTAGGGATGAATCCGGGACCTTTCGGTATGGCACAGACCGGGGTCCCCTTTGGTGAAGTAAGGTCTGTTGTTGATTGGCTGAAGATCACAGGGGAGGTCGGTCATCCTCAGGACGAGCATCCTAAGCGGCGGATCACCGGACTTGCCTGCACTCAGAAGGAAGTGAGTGGCGCCCGTTTCTGGGGCTTCTTCAGGAAGTTGTGTGGCGAACCAGAACTGTTCTTCCAGCACTGCTTTGTGCACAATCTATGCCCGCTCATTTTCATAGGTGCTAGTGGGAAGAATCTAACCCCCCCTGAGCTGCCTGCAGGTGAACGGGAGGCCCTCTTGGCCCTGTGTGACGTTGCACTGTGCCAGGCGGTGGAAGCATTGGGCGTCTCCATGGTGATCGGGGTTGGAAGGGTGGCAGAGCAGCGGGCGCGGCGAGCTCTATCAGCAGCAGGTGTCAACGTGTGTGTCGAGGGCATCATGCATCCGTCACCCAGAAACCCACTAGCCAATAAGGGCTGGGAGGAAGTAGCCAACGCCAAGCTGGCAGAACTTGGTGTCTTGTCACTGCTGAACAACATGTGAGCTATTCAACCTTCTCTGACACGTGCCTTCAGTTATCAGTAGCAGCATGGATTGCACGGACTCTGACAATGGACCATGGTGTGAGGAGTTTGAGTAAGAGACTACCGTTTCATTCCAATACCCATACTTGCATACTATTTAGTAAGCCAGGAAGAGATTTAGTATGTCCCAAATAGTATGTCAAACGCAGTATGCTAAAAAATGTCCTACTGGATGTCTTAGTGCTATGTTCCAACTGTATGCTAACATCATGCAACAATTCATACTTTGTAAGGGCAGCTGCAGTACatactaaagtaaaaaaaaagtatgcaaTTTGGAATTCAGCTTTAGTGTTTGTCTGTAAACACATCTGTTCAGCAACTGcacattttcttcttctgtaaagatctgtctgtctgttcattTCAAGATGGCTTTTCTTTACAGATCAGTGCGTGTGGAGCACGGCACTAGGCTGTGCAACAAACAATACAAGTGTATTGTGTAAAAAAACGACAACTAATCACTAATGTTACTATAAGGTGCTCTGGGTGTTTCAACTTTAAATTCAGCCTCACCGCAGGCATTACCGCCTGTCCCAATATGTATTAGCTAATGAGGATGCCTATTGGGACACACAATGAACACTAAACATGACAATGAAAATAGATTCCAAAATGCAGTACTGTGAATGCACATACTAGACATTTTAATTTACCTTCAAACGGTATTAATTTACCAAATTGAACAATTGtcattttaactttaaaaaCAAGGCATTTTGCCTTACTACCTGTTTCcaaaaataaattcataaaGGTGCAGTCCATACCTTACTGTCCTACTGTAGCTTTTGCAGTTCAGAAATATTCTGATATGACAAAGTTATTTTGTAAATATGCAGTTGTATTGTTCATGCTGGACAACTGTGcaagatttttcttttgttttctttcaaaaaaaatctttttaaattgtcttttttttgggaTAATGCATTTGATTTCTTTACACACAGATTTTTATCCAATTCTGTGTATTTCTGGGCTCAGCACTCTTGAAAACTTGGTGTTTTAATAAATATAGAgtaatgaaatataaaaatcatTATCTCCCTCTGGTAATTGAACGATGAAGGCTTACTGACAACTAAGCAAGatatttagcatgttagcatggtaATATGCTAAGTAAGGCTTAAGTTGATGGGAAATGAATTAGTTTCAGCGGTATCCTGTCATGAATGAAGTGGAGCCAGGTGAAACACAGGTGAAACAAAAAATGTGTCTTGTCGCagtagaaaaaataaatacaaataatacaattaataatgtctgaattccatttagctggcattgtgcatgctggcttacTGTCACGGCTTCCTGGGACACTGGAATAGAACAGAGCCAATCTTAATGGTATTATTGACaagtgcttttcctactatgacaagccAAAACATGGTTTCTCTGAAAAGGCTAAGACAAAATCAGTGGAGACCTTTGaaagtacagtgccttgcggaagtattcggcccccttgaacttttcgaccttttgccaca

Function

symbol description
smug1 Predicted to enable single-strand selective uracil DNA N-glycosylase activity. Predicted to act upstream of or within base-excision repair. Predicted to be located in nucleus. Orthologous to human SMUG1 (single-strand-selective monofunctional uracil-DNA glycosylase 1).

NR:

description
single-strand selective monofunctional uracil DNA glycosylase

GO: NA

KEGG:

id description
K10800 SMUG1; single-strand selective monofunctional uracil DNA glycosylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039796979.1 True 3685 mRNA 0.44 2 14857461 14861776

Neighbor

gene id symbol gene type direction distance location
LOC120557243 agap2 coding upstream 79566 14757839 ~ 14777895 (+)
LOC120558200 LOC104954920,LOC103376555,LOC104932002,LOC101062422 coding upstream 189007 14652797 ~ 14668454 (+)
timeless timeless coding upstream 207027 14638398 ~ 14650434 (+)
prph prph,LOC103375502 coding upstream 220021 14631878 ~ 14637440 (+)
pmela pmel,LOC103359383,LOC103375503 coding upstream 231135 14619517 ~ 14626326 (+)
LOC120556996 LOC104963001,LOC100707699,LOC101468050,LOC103376574,LOC102797035,LOC102310016,LOC102194854 coding downstream 90546 14952322 ~ 14962342 (+)
faim2b LOC103376611,LOC101076527,LOC100707431,LOC101467547,LOC102195132 coding downstream 103931 14965707 ~ 14969461 (+)
LOC120556827 LOC103376578 coding downstream 157697 15019473 ~ 15118158 (+)
LOC120556705 NA coding downstream 295932 15157708 ~ 15159398 (+)
si:dkey-28n18.9 LOC103376583,LOC102799394,LOC100705573,LOC104955032 coding downstream 297816 15159592 ~ 15165727 (+)
G38495 NA non-coding upstream 142944 14712784 ~ 14714517 (+)
G38496 NA non-coding upstream 145327 14710726 ~ 14712134 (+)
G38449 NA non-coding upstream 166836 14642932 ~ 14690625 (+)
G38441 cdk2 non-coding upstream 247039 14607839 ~ 14610422 (+)
G38331 NA non-coding upstream 362721 14492903 ~ 14494740 (+)
G38526 NA non-coding downstream 1546 14863322 ~ 14864107 (+)
G38538 NA non-coding downstream 53902 14915678 ~ 14976904 (+)
G38670 NA non-coding downstream 388793 15250569 ~ 15250933 (+)
G38738 scn8a,LOC106518053,LOC106572732,LOC103465359,LOC108440919 non-coding downstream 534953 15396729 ~ 15397507 (+)
G38762 NA non-coding downstream 600525 15462301 ~ 15463452 (+)
znf740a LOC107385642,LOC101469799,LOC102214350,LOC102304359,LOC103376569,LOC107082105,LOC100709046 other upstream 392 14765297 ~ 14857069 (+)
G38517 NA other upstream 41025 14808352 ~ 14816436 (+)
cdk4 LOC107684003,LOC107701179 other upstream 100102 14740609 ~ 14757359 (+)
LOC120557952 mettl21b other upstream 519701 14335160 ~ 14337760 (+)
LOC120557956 nrn1,LOC104931831,LOC102785075,LOC100692329,LOC102195708,LOC102307414 other upstream 623924 14227097 ~ 14233537 (+)
calcoco1b LOC104959845,LOC103376572 other downstream 3283 14865059 ~ 14874459 (+)
G38834 NA other downstream 783735 15645511 ~ 15647851 (+)
crbn crbn,LOC102793823 other downstream 1061545 15923321 ~ 15937097 (+)
ccdc174 ccdc174 other downstream 1103626 15965402 ~ 15974237 (+)
eefsec eefsec,LOC102787825 other downstream 1187902 16049678 ~ 16060330 (+)

Expression


Co-expression Network