LOC120556996 (LOC104963001,LOC100707699,LOC101468050,LOC103376574,LOC102797035,LOC102310016,LOC102194854)


Basic Information

Item Value
gene id LOC120556996
gene name LOC104963001,LOC100707699,LOC101468050,LOC103376574,LOC102797035,LOC102310016,LOC102194854
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 14952322 ~ 14962342 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039796981.1
TCAGAGAGCgtgacatacagagagagacatccCTGATAGGCCTACATAACGAGAAACAGGCGGTTGACGGGACACACAAAAAGAacgcgaaaaaaaaaaactggtcacatttcTCAGGCACTTGAAAACGTGCGGGTTATTTTAGGACTCGTGTTGCTCATTGATGAGTGGGAGTGTTTAAACTACTTCTACTCCGGTCATGTTTTGATCGTGACTGTACATGGCAAGCAGCTGAACGCGTTGGGACCTCTGTAATTTAGAGAACCGCGCAACAGTGATATTATTTCTCAGCCTGGCATCATAAGGTGTGTAGACGGAGAGCCGAGCTGTCCTCCGTCACTTCACCTCGGAAATAATTTGGATCAATAGATCTGCTCTAATTTCCTTTGAAAAGATATTTCTTATACTTTTTCTTTGCTGTCCGGATTTTCTCAACAACCTCAATGCTCTGCGCACACTGCTGTTTGTCTGAGCTTGTGGATACATTCTTTATGCCTTGGCAGTTGTGGACTCTTTCAACGAAACTGATCGGTAGCGAGAAAAGGCAGTCAGTCCAGCATTAGACGCccacaaaataaactacacGGAACAACCGAACAACATCGACCTACTAGGAAACATGGAACACAGTCCTGGTGGTGGTGTTATCTTGTACGCTGGCTCGTCCGGCAGTGCCAGCCCGAGTCCTGGCAGCCCCTCAAGTGGATACCAGTCCCAGTCGCCCTCCTCCCACTCGCAGCCTTCATCCCCAGAGGGTGTCTTCTTTCAGGAGATTGGGCCCCTGAAGCAGAGAGAGGAACGGAGGGGCGGGACTCCTTCCCCGAAATTGGTCTTCCAGTTTCCTGAGGTGAACACTGCTCCTGTTGCCCAAATTACAACAGTATCATCGGCAACTTACAGCCATCCCACAGTGGCCAAAAGACCTTGTGGTTTCACTGGAACGTTCACTAAGACCGGAGGTATGGTACTTCTGTGTAAGGTGTGCGGGGACATTGCATCTGGGTTCCATTACGGTGTGCATGCCTGTGAAGGCTGCAAGGGTTTCTTCAGACGCAGCATTCAGCAGAATATCCACTACAAGATGTGTGTAAAGAATGAAAACTGTGTCATCATGCGCATGAACCGAAACCGGTGCCAGCACTGCCGCTTTAAGAAGTGTCTCTCCGTGGGCATGTCCAGAGATGCTGTGCGTTTTGGGCGTATTCCCAAACGGGAGAAGCAGAGACTACTGGATGAGATGCAGAGCTACATGAACAGTCTTAATGAATCGGCTTCCATGGAAATGGAGGTGTCCCCTCCTACCGATGCCCCCTGCAGTCCACAGAACCAGACGAATGAAGGTGCGGGCTCCATGTCGCAGTCTTACCGCAGCAACTTAATGAACAGAGATCAGAAACCACTCAAGATGGCTGCCGGCAACGGCAACATCGGAGCTTCCTCTTTCCAGAACAACTCAGTGCAGCAACCTTCCCTGTCGCACTCGGCAACCCAGACCCACCACACGGTTCACGGGGAGCAGGCGAGCTACCACGTCCCCACAAGCTGCCCGGTTTCCTCCACCAACAACGAAAACTCCACTGTCATCGATGACGCCAAGTACACCTTCTCTTCCAATCAGAATCAGTGCCCCGTCAGTGGCCGCCTATCCTCTAAATCCtactcagccaatcagaacagtTACCCAGCCAGTGATTCCCAGAACCAAAGTCCCTGCCCCTGGACGCTAAACGGAGGAGCCAAAGTGCTGGCATGTCCACTCAATTCCTGTCCAGTGGCTCCGGCCAGTCGCTCCAGTCAGGAGGTGTGGGAGTCTTTCTCCCAGTGCTTCACCCCTGCTGTTAAAGAAGTAGTGGAGTTTGCAAAGAGCATCCCGGGCTTCCAGTCTCTCAGCCAGCACGATCAGGTCATGCTGCTCAAGTCCGGCACTTTCCAGGTTCTCATGGTGAGATTCTGCTCACTGTTTGACCCCAAGGAAAGGACGGTGACCTTCCTCAATGGGCAGTCATATTCCCTGGCATCGCTTAGAGCTCTTGGCATGGGCTCCTTACTGGACGCCATGTTTGATTTCAGCGAGAAGCTCGGATATTTGGGTCTGGAGCCAGACGAGATGGCTCTATTCATGGCTGTCGTGCTGGTTTCTGCTGATCGCTCCGGTATAGTGGAGGTTGGAGCAGTGGAGCAACTGCAGGAGAATCTAATAAAAGCTCTGCGCTCTCTCATAACCAGTCGCCGCCCAGATGATAGCACCCTCTTCCCAAAGTTGCTTCTACGTCTGCCGGACCTGCGCACGCTGAACAACCACCACTCTGACAAGCTTTTAGCTTTCCGAATAGATCCTTGAGTTCGAAGAGCTAAAGCTTCCGGAGGTGCTTTGGGAAGCCTCCCTGCTCCCCATGCAAGCCTGGCCTGCCACACACAGTACGCTGGCCTCTGCATGATACTGTGGGAGCTGTGCCAAGTCTGATGCCATGAGAGAGCGAACTTGGGGAGAAAAAATATCAGTGAAGGATGTAGGCACAGCAGAAGGGTGGAGGCTCCTGAACTGAAACCTCTTCCAGTTCCAGgattgcttaaaaaaaacaaacaaaaaaacattaaaaacatagaTTGGGTTCTTCCATGGGTTCTTCGAGTCAACATCAAACCAAGTCATCACCTCTCCCTCGGGGAGTTTGTGCTGAAGaccaaaaagaagagagaactTGTTGTTTGTTCCTAGACTTTGTCCTCCAATCCCAGCTCACAGAGCTAACAAGAGGGAAGCATACTCTTGCCCAGAGAAAAAGGAACATGTACAAACATTCACCAACAATGATTtcttactgtacattcatgcTACAATGTGTAAAGGGCACTTTCCATACATTGACAAGACCTCTTAgataaatatataacatagcaATAGATATGTCTAATACACAGTTTTGGACAGTTTGTGTATGCGCTGTTTAAATTACATAAGCTATTTTCACAACATGTCACCATGTGAGAAATCTTTATGAAAATCACCCATTTGTGATTGAGAAATGTATAACATTTTTAAGAAATGAGAGTAATATGCATTGTATTTGTATGCGGTAATCAGGGCGAAACTATTGGTCATTTTAGACCGTGTCTGATGGGATGTATGTTAAGATGTTTTCTTGTAAATTTTGTATATAACCTTATTCTTGGTCCACATAGTTTGCAGATTATTGGATATGTAAATGAAGTTAGCATTGAATTATTGTATGTATATCACACATAATAGATTGCTTTACAGACTGCCAAGATAAAGCGGCACTTCAACTTGagtataaactttttatttgaagatatataattgaaataaatgtattgtCAACTGAC

Function

NR:

description
PREDICTED: nuclear receptor subfamily 1 group D member 1-like

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0048384 retinoic acid receptor signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039796981.1 True 3348 mRNA 0.48 8 14952322 14962342

Neighbor

gene id symbol gene type direction distance location
smug1 smug1,LOC102792633 coding upstream 90546 14857461 ~ 14861776 (+)
LOC120557243 agap2 coding upstream 174427 14757839 ~ 14777895 (+)
LOC120558200 LOC104954920,LOC103376555,LOC104932002,LOC101062422 coding upstream 283868 14652797 ~ 14668454 (+)
timeless timeless coding upstream 301888 14638398 ~ 14650434 (+)
prph prph,LOC103375502 coding upstream 314882 14631878 ~ 14637440 (+)
faim2b LOC103376611,LOC101076527,LOC100707431,LOC101467547,LOC102195132 coding downstream 3365 14965707 ~ 14969461 (+)
LOC120556827 LOC103376578 coding downstream 57131 15019473 ~ 15118158 (+)
LOC120556705 NA coding downstream 195366 15157708 ~ 15159398 (+)
si:dkey-28n18.9 LOC103376583,LOC102799394,LOC100705573,LOC104955032 coding downstream 197250 15159592 ~ 15165727 (+)
LOC120557981 LOC103376584,LOC104955004,LOC108235576 coding downstream 235165 15197507 ~ 15208019 (+)
G38526 NA non-coding upstream 88215 14863322 ~ 14864107 (+)
G38495 NA non-coding upstream 237805 14712784 ~ 14714517 (+)
G38496 NA non-coding upstream 240188 14710726 ~ 14712134 (+)
G38449 NA non-coding upstream 261697 14642932 ~ 14690625 (+)
G38441 cdk2 non-coding upstream 341900 14607839 ~ 14610422 (+)
G38670 NA non-coding downstream 288227 15250569 ~ 15250933 (+)
G38738 scn8a,LOC106518053,LOC106572732,LOC103465359,LOC108440919 non-coding downstream 434387 15396729 ~ 15397507 (+)
G38762 NA non-coding downstream 499959 15462301 ~ 15463452 (+)
G38788 espl1 non-coding downstream 579911 15542253 ~ 15543372 (+)
G38829 NA non-coding downstream 663969 15626311 ~ 15626840 (+)
calcoco1b LOC104959845,LOC103376572 other upstream 77863 14865059 ~ 14874459 (+)
znf740a LOC107385642,LOC101469799,LOC102214350,LOC102304359,LOC103376569,LOC107082105,LOC100709046 other upstream 95253 14765297 ~ 14857069 (+)
G38517 NA other upstream 135886 14808352 ~ 14816436 (+)
cdk4 LOC107684003,LOC107701179 other upstream 194963 14740609 ~ 14757359 (+)
LOC120557952 mettl21b other upstream 614562 14335160 ~ 14337760 (+)
G38834 NA other downstream 683169 15645511 ~ 15647851 (+)
crbn crbn,LOC102793823 other downstream 960979 15923321 ~ 15937097 (+)
ccdc174 ccdc174 other downstream 1003060 15965402 ~ 15974237 (+)
eefsec eefsec,LOC102787825 other downstream 1087336 16049678 ~ 16060330 (+)
LOC120557902 rab7,rab7a,LOC102230535,LOC106583206,LOC105017191,LOC101061812 other downstream 1186783 16149125 ~ 16158362 (+)

Expression


Co-expression Network