XLOC_005097 (eif3c)


Basic Information

Item Value
gene id XLOC_005097
gene name eif3c
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 3944229 ~ 3962372 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009899
CTTTCTGGAAGAAGCCGACTGGGCTTTGACGCACGCTGTAAATTGTGCTAGCAAAATTGCAAATCTGGATCTAAATTCTACACAAACGGAGGACAAACGAGGATTTTACATTTCTAACAAATAACAGTGTTACCTGCCATCTGTTATGTCGCGTTTTTTCGCCACTGGATCCGACAGTGAGTCGGAGGAATCCTCGTCCGCTGATGAGATCACCCCCAAAGCAGCCGGGACTACTCTGAGACAGCAGGCCCTGCTGTTGAGTGATGATGAGGAGGACACCAAAAGAGTGGTTCGCAGCGCCAAGGACAAGAGGTTTGAGGAGCTCACCAACTTGATTAAGACCATCCGCAATGCTATAAAGATCCGAGACATCTCCAAATGTCTGGAGGAGTTTGAGCAGTTGTGTCGAGCGTTCGTCAAGAGCAAAACTATCGTGGATAAAGAGGGCGTGCCCAAGTTTTACATTCGCCTGCTCGCTGATCTGGAGGACTATCTCAACCAGCTATGGGAGGACAAAGAGGGAAAGAAGAAGATGAATAAGAACAATGCTAAAGCTCTGAGCACGCTCCGCCAGAAGATCCGCAAGTACAACAGAGACTTTGAAACTGAGATCGCCAGCTATAAAGAGAATCCTGAGCAGTcagctgatgaagaggaggagaaaGACGATATTGGCAGTGGCTCTTCTgagagtgatgatgatgatgacgacgataTAACCGCCAAGAGCTTTATGAAGAAGAAGCCTCAAGAGGAAGAGAAAAAAGCTCCAGAAGCCAGCAAATTCCTTAAGGGTGCTGCTGATGAAGAGTCTGAGAGTGATGATGATGAGGACAGTGAGGACTGGGCGTCTGATTCAGTGGGCAGCGACAGCGAGAGTGAAGACAATGATGGAACTGCAGCATCACTGGCTGTGGTCTTCCTCAAAAAAGATGTTGGCGAAAAGGCATCTGACCGCAAGAAGGATGACAGGAGGAGGAGACACAAGAAGAAGGAGCGCATCGAGGAGGAGGCCGAGGAGGAGGGAGAAGCGGAGGAAGGAGGATGGGAGAAGGTGAAGGGTGGAGTGCCGCTTGTCAAGGAGAAGCCTAAGATGTTTGCCAAAGGCACAGAGATCAATACGGGTGTGGTGGTTAAGAAACTCAGTGAGATCCTGCAGGCCAGAGGAAAGAAAGGAACTGACAGAGCTGCTCAGATCGAGCTTCTTCACGCTCTGGCTGGCATCGCTGCTGAGAATAACCTCGGAGAAGGCATCCTCGTCAAGATCAAGTTCAACATCATTGCCTCTCTATATGACTACAACCCCAACCTGGCTGCTTTCATGAAGGCTGACATGTGGAAGAAGTGTCTGGACTGCATTGATGAGCTTCTGGACATCctgtttaacaacaacaacatcttcATTGGAGAAAACATCGCAGAAGACAGCGAGAACCTCGCCATCTCTGACCAGCCGTTCCGTGTGCGTGGCTGTATTCTGACTCTGGTGGAGCGGATGGATGAAGAGTTCACCAAAATCATGCAGAACACAGACCCTCACTCTCAGGAGTATGTTGATAACCTGAAGGACGAGGGCCGTGTGTGTGGCATCATCGACCGCCTGCTGCAGTATCTGGAAACTAAAGGCAGCACTGAGGAAGTGTGTCGGGTTTATCTGCGCAGAATCATGCACACATATTACAAGTTCGACTACAAAGCTCACCGCCGCAGCCTCGGCCTACAGGGAGAGACTAAGTCTGAGCAGGATCAGGAGGAGAGTGAAGGAGACGACAGCGCCATCATCATGGACCGTTTGTGTAAGTTCATCTACGCCAAAGATCGCACAGATCGTATCCGTACCTGCGCCATCCTGTGCCACATCTACCATCATGCCCTGCACAGCCGCTGGTACCAGGCCAGAGACCTCATGCTCATGAGCCACTTACAAGACAACATCCAGCACGCTGACCCTCCTGTACAGATCCTCTATAACAGGACCATGGTGCAGCTGGGCATCTGTGCTTTCCGTCAGGGCATGATTAAAGATGCCCACAATGCCCTCTTGGACATCCAGTCGAGCGGCAGAGCCAAGGAACTGCTGGGGCAGGGGCTGCTGATGAGGAACATGCAGGAGAGGAACGCAGAGCAGGAGAAGATCGAGAAGAGGCGGCAGGTGCCATTTCACATGCACATCAATCTAGAGTTGTTGGAGTGTGTGTACCTGGTGTCCGCCATGCTGCTGGAGATTCCGTACATGGCAGCTCACGAGTTTGACGCCCGCCGCAGGATGATCAGCAAACAGTTCCACCACCAGCTAAGAGTGGGCGAGAGACAGCCGCTGCTGGGTCCTCCTGAGAGCATGAGGGAGCATGTAGTGGCTGCTAGCAAGGCCATGAAGATGGGTGACTGGAGGACCTGCCATTCTTTCATCATCAACGAGAAGATGAACAGCAAAGTCTGGGATTTGTTCCCAGAAGCAAAGTGTGTGCGCGAAATGCTCGTCAGGAAGATCCAAGAGGAGTCGCTGCGCACTTACCTTTTCACCTACAGTAGTGTGTACGACTCAATCAGTATGGAGACTCTGTCAGAGATGTTTGAGTTGGAGTTACCCACAGTGCACAGCATTATCAGCAAGATGATCATCAATGAAGAACTGAtgGCGTCTCTGGACCAGCCGACTCAGACTGTGGTGATGCACAGAACAGAGCCTACATCTCTGCAGAACATGGCTCTACAGCTGGCAGAGAAACTGGGCGGCTTGGTGGAGAACAACGAACGCGTCTTTGACCTCAAACAGGGCGTCTATGGAGGATACTTTAACAGAGATCAAAAAGGTGGATACCAACAGAAGCAAGGCTACCAGAGAGGAGATCAGAAAGGCGGTTATCAGCAGAAACAGAACTACCAGCGAGGTGGATACCGGAACCAGAACCAGAGCTCATACTAATCCCAGCGCAGCCTAAATCACGGCTTCATTCCAGGACCAGACTGCAGCTTCCTCTGACTTTGCTCTCCAGACActgactccagatctgttttgtttttttgcagtgctTTAGTTGCAGATGAAACCAAGCTTAATTTTATTGACCCGCTATTATTCGAGTGCTTGGGTTTACATTGTCGAGGATTCTGAGCAGTTTTGGAGGTTATTACGTGGGTTGGAAAGGAAATATCAAGTCATTTGTGATAACAACTGGTCAatcaataaacattattaaatctaAA

Function

symbol description
eif3c Predicted to enable translation initiation factor binding activity. Predicted to contribute to translation initiation factor activity. Predicted to be involved in translational initiation. Predicted to act upstream of or within translation. Predicted to be located in cytoplasm. Predicted to be part of eukaryotic translation initiation factor 3 complex. Orthologous to several human genes including EIF3CL (eukaryotic translation initiation factor 3 subunit C like).

GO:

id name namespace
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0006412 translation biological_process
GO:0006413 translational initiation biological_process
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003723 RNA binding molecular_function
GO:0031369 translation initiation factor binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
ko03012 Translation factors

ZFIN:

id description
ZDB-GENE-030131-6166 Predicted to enable translation initiation factor binding activity. Predicted to contribute to translation initiation factor activity. Predicted to be involved in translational initiation. Predicted to act upstream of or within translation. Predicted to be located in cytoplasm. Predicted to be part of eukaryotic translation initiation factor 3 complex. Orthologous to several human genes including EIF3CL (eukaryotic translation initiation factor 3 subunit C like).

Ensembl:

ensembl_id ENSDARG00000016443

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009899 True 3207 mRNA 0.50 22 3944229 3962372

Neighbor

gene id symbol gene type direction distance location
XLOC_005096 zgc:92040 coding downstream 3461 3926168 ~ 3940768 (-)
XLOC_005095 gdpd3b coding downstream 40218 3893032 ~ 3904011 (-)
XLOC_005094 NA coding downstream 78995 3860464 ~ 3865234 (-)
XLOC_005093 taok2b coding downstream 103565 3789114 ~ 3840664 (-)
XLOC_005092 NA coding downstream 157847 3782621 ~ 3786382 (-)
XLOC_005098 ppp4cb coding upstream 1979 3964351 ~ 3978342 (-)
XLOC_005099 si:ch211-136m16.8 coding upstream 18974 3981346 ~ 3992839 (-)
XLOC_005100 si:ch211-180a12.2 coding upstream 36392 3998764 ~ 4028079 (-)
XLOC_005101 aldoab coding upstream 89808 4052180 ~ 4070058 (-)
XLOC_005102 NA coding upstream 127365 4089737 ~ 4129820 (-)
XLOC_005087 NA non-coding downstream 374148 3569747 ~ 3570081 (-)
XLOC_005086 NA non-coding downstream 400213 3519168 ~ 3544016 (-)
XLOC_005083 NA non-coding downstream 659320 3281756 ~ 3284909 (-)
XLOC_005103 NA non-coding upstream 181222 4143594 ~ 4169699 (-)
XLOC_005105 NA non-coding upstream 227650 4190022 ~ 4194304 (-)
XLOC_005109 NA non-coding upstream 269485 4231857 ~ 4232505 (-)
XLOC_005111 NA non-coding upstream 312538 4274910 ~ 4287034 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G202934 NA non-coding CI01000047 null 4075919 ~ 4086107 (-)
bowfin (Amia calva) AMCG00012327 eif3c,LOC106904143,LOC100304733,LOC102226018,LOC105917567 coding CM030138.1 CM030138.1 16212913 ~ 16226772 (+)
mexican tetra (Astyanax mexicanus) G170109 NA non-coding NC_035915.1 CM008318.1 25741386 ~ 25744194 (+)