LOC120557028


Basic Information

Item Value
gene id LOC120557028
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 38342443 ~ 38344251 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039797043.1
AGTAAAGAGGTGAGGTTTGGAGGCTCCTCAGACAAAATGCAGAGAGCATCAGAGCTCTGCGGGACTTCAACATGAGGACACACGAGTCCGCTATTGGCCCCGTCACTGTCAGACTGCAGCACTTCTCCCACATTTAGTTTGGAGGCTTATATCAGTGAAGAGACAACACAAAGTGGCATCCAGACTGCTCAGAGGAGACACCGACCGGGATGGGCTGagtctccacggttctcatgtTGTGTTTAAGTGCACCACCCTGGTGTGTACTTTCCATCagtccagtcagactctctgTGCAACCCCTCTGTGTTGTGTTGAGAAGAAACAGAATCTTGATTAGAAAAATGGCAGAAGTAGCTCCAGCCGCCTCGCCGGCCAAAGCAGCCAAGAAGAAGGTTTCCAAGCCGAAGAAGGCCGGCCCCAGCGTCAGCGAGCTCATCGTTCAGACTGTGGCCGCTTCCAAGGAGCGGAGCGGCGTGTCTGCGGCCGCCCTCAAGAAGGCTCTGGCTGCCGGAGGCTACGATGTGGACAAGAACAAGGCCCGTGTTAAGACCGCCATCAAGAGCCTGGTGGCGAAGGGGACTCTGGTCCAGACCAAGGGGACCGGAGCATCCGGTTCCTTCAAGATGAACAAGAAGGCTGTTGACACCAAGGCTAAGAAGCCGGTCAAGAAAGCCGCTCCTAAAGCCAAGAAGCCCGCAGCGGCCAAGAAGCCCAAAGCAGCGGCAGCTAAGAAGCCAGCAGCCGCGAAGAAGTCCCCGAAGAAGGCCAAGAAACCCGCAGCGGTCAAGAAAGCAGCCAAGAGCCCCAAAAAGGCCACAAAGAGCCCCAAAAAGGCGACCAAGAGCCCCAAGAAAGTGGTCAAAAAGGCCCCTGCAGCCAAGAAAGCCCCCGCTAAGAAGGCTGCCAAGCCCAAAGTGAAGAAGGCAGCACCCAAGAAGAAGTGAGCTGTAGTCAGTCTCATTAAGAAACGGCTCTTTAAGAGCCACCAAATCCTCCTCAaagagctttttcttttttaatcttatTCTGTAATTAACAAGAAACTTTGGGAGCACACTTAATTATATCAGGAGTAATCACTACAAGAAAGTAGTTTACCTTTTAAAACCAACTAGCTCCTAAATTTGTTCTTTTCATATAAATATCACAATTGCTTCAGAATCCCAGAGAAAGCAAAAGGTTTCACACATGACtataaaaataatcgttttaTTGAAATAACTGATAAACCAGTAAGGGAAAATAAaccttaatttaaaattaagaGAAAAACTTCATTATTTATACCAAAACAAGAACACTTTCACTTCTATCCAATGGAAGGAcgttactagaattgttggggctttgtaaagtatagtgtggtctagatctactctgtaaagtgtcttcagATAATGCTTATGATTTGATACACACATTGCTACAAATTTAAGAtaagatttttatttaaaaaagacaggATTATTTGTCATGgaaaattcaaaacattttagttttcattGTAGATTTGTGAGCAAATTTTATCAAATTAAACTGACCTATATTTAAGTGAAGGGGTCTCAACTTATATCATGGATCCGCTTAGTTTTAGGAAGAGTGGTTCTTTaatatggttaaaaaaaagaacaatgtgTGCTTAAATCATGCTATCTCATTTacattcccccctttttttacattatgtTTGGATAGTCATACACATCTCTTGTAGCCTATATCTCGTCCTGTTTCACTGTATGACTTTATGTTGAGCTGTTTCCATTTACTTTACGGTTAATCCTCAGTTACTAAAGATAGTCTCAA

Function

GO: NA

KEGG:

id description
K11275 H1_5; histone H1/5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039797043.1 True 1809 mRNA 0.44 1 38342443 38344251

Neighbor

gene id symbol gene type direction distance location
LOC120557038 si:ch1073-153i20.5,LOC103462478,LOC107386469,LOC103381127,LOC103395676,LOC102204254,LOC101485372 coding upstream 16453 38325543 ~ 38325990 (+)
LOC120557035 LOC103395674,LOC101167724,LOC101068541,LOC105888650,LOC101170117 coding upstream 29956 38311854 ~ 38312487 (+)
LOC120557029 NA coding upstream 33459 38306826 ~ 38308984 (+)
LOC120557049 LOC104935308,LOC104932967 coding upstream 38082 38303664 ~ 38304361 (+)
LOC120557052 NA coding upstream 39669 38301095 ~ 38302774 (+)
LOC120557037 LOC105888650,LOC105896821,LOC103395674,LOC101068541,LOC105891059 coding downstream 2556 38346807 ~ 38347243 (+)
LOC120557646 LOC103371188,LOC100695319,LOC106525027,LOC101482544 coding downstream 21808 38366059 ~ 38409274 (+)
rbpjl rbpjl,LOC100707106 coding downstream 389916 38734167 ~ 38784058 (+)
LOC120557663 NA coding downstream 512916 38857167 ~ 38886428 (+)
LOC120557676 NA coding downstream 553109 38897360 ~ 38913530 (+)
G44387 LOC104935308,LOC107719244,LOC104932967 non-coding upstream 10393 38331380 ~ 38332050 (+)
LOC120557055 NA non-coding upstream 94123 38247303 ~ 38248320 (+)
LOC120557056 samd3,LOC101476819 non-coding upstream 114093 38227579 ~ 38228350 (+)
G44325 LOC104935308,LOC104932967 non-coding upstream 181749 38159937 ~ 38160694 (+)
G44265 NA non-coding upstream 392666 37949515 ~ 37949777 (+)
G44402 NA non-coding downstream 65751 38410002 ~ 38412477 (+)
G44401 NA non-coding downstream 68576 38412827 ~ 38413939 (+)
G44417 NA non-coding downstream 111671 38455922 ~ 38456336 (+)
G44419 NA non-coding downstream 112430 38456681 ~ 38457162 (+)
G44424 NA non-coding downstream 162817 38507068 ~ 38507690 (+)
LOC120557027 NA other upstream 167949 38166182 ~ 38174494 (+)
plekha6 plekha6 other upstream 246371 37960706 ~ 38096072 (+)
fezf2 fezf2 other upstream 1631148 36703255 ~ 36711295 (+)
trnac-gca_18 NA other upstream 2379833 35962539 ~ 35962610 (+)
G43924 NA other upstream 2676402 35664143 ~ 35666041 (+)
G44436 NA other downstream 268386 38612637 ~ 38612971 (+)
LOC120557667 LOC102775714,LOC103375741 other downstream 556321 38900572 ~ 38903056 (+)
LOC120557670 NA other downstream 608867 38953118 ~ 38981733 (+)
LOC120557680 NA other downstream 1402922 39747173 ~ 39774250 (+)
G44581 NA other downstream 1469709 39813960 ~ 39821908 (+)

Expression


Co-expression Network