LOC120557035 (LOC103395674,LOC101167724,LOC101068541,LOC105888650,LOC101170117)


Basic Information

Item Value
gene id LOC120557035
gene name LOC103395674,LOC101167724,LOC101068541,LOC105888650,LOC101170117
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 38311854 ~ 38312487 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039797051.1
GCTGTTCACTCCGAGCACTATTCCTTCTTGAACTGTGAGCACAGAGAAGACTGCGAAACAGAAATGGCAAGAACCAAGCAGACCGCTCGTAAATCTACCGGAGGTAAAGCCCCCAGGAAGCAGCTGGCCACCAAGGCTGCCCGTAAGAGCGCCCCGGCCACCGGCGGCGTGAAGAAGCCTCACCGTTACAGGCCCGGTACCGTGGCTCTGAGAGAGATCCGTCGCTACCAGAAATCTACCGAGCTGCTGATCCGCAAGCTGCCCTTCCAGCGCCTGGTCCGAGAAATCGCTCAGGACTTCAAGACCGACCTGCGCTTCCAGAGCTCCGCCGTCATGGCTCTGCAGGAGGCCAGCGAGGCTTACCTGGTCGGTCTGTTCGAGGACACCAACCTGTGCGCCATCCACGCCAAGAGGGTCACCATCATGCCCAAAGACATCCAGCTGGCCCGCCGTATCCGCGGAGAGAGGGCTTAAACTCACAACAGATCGTCCTACAGTCCCACAacggctcttttaagagccacaTACAAACACTAACTGAGCAACAGTCCCGAAACAATATTGTGACAATGTTATGTACTATTATAAACTTATGCACTTAAGTAGTGCAGACAGAAACTTACAATAAATGTCT

Function

NR:

description
PREDICTED: histone H3-like

GO:

id name namespace
GO:0006334 nucleosome assembly biological_process
GO:0007596 blood coagulation biological_process
GO:0000786 nucleosome cellular_component
GO:0005576 extracellular region cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0003677 DNA binding molecular_function
GO:0030246 carbohydrate binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K11253 H3; histone H3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039797051.1 True 634 mRNA 0.54 1 38311854 38312487

Neighbor

gene id symbol gene type direction distance location
LOC120557029 NA coding upstream 2870 38306826 ~ 38308984 (+)
LOC120557049 LOC104935308,LOC104932967 coding upstream 7493 38303664 ~ 38304361 (+)
LOC120557052 NA coding upstream 9080 38301095 ~ 38302774 (+)
LOC120557034 NA coding upstream 26242 38282988 ~ 38285612 (+)
LOC120557050 LOC104935308,LOC104932967 coding upstream 52698 38258538 ~ 38259156 (+)
LOC120557038 si:ch1073-153i20.5,LOC103462478,LOC107386469,LOC103381127,LOC103395676,LOC102204254,LOC101485372 coding downstream 13056 38325543 ~ 38325990 (+)
LOC120557028 NA coding downstream 29956 38342443 ~ 38344251 (+)
LOC120557037 LOC105888650,LOC105896821,LOC103395674,LOC101068541,LOC105891059 coding downstream 34320 38346807 ~ 38347243 (+)
LOC120557646 LOC103371188,LOC100695319,LOC106525027,LOC101482544 coding downstream 53572 38366059 ~ 38409274 (+)
rbpjl rbpjl,LOC100707106 coding downstream 421680 38734167 ~ 38784058 (+)
LOC120557055 NA non-coding upstream 63534 38247303 ~ 38248320 (+)
LOC120557056 samd3,LOC101476819 non-coding upstream 83504 38227579 ~ 38228350 (+)
G44325 LOC104935308,LOC104932967 non-coding upstream 151160 38159937 ~ 38160694 (+)
G44265 NA non-coding upstream 362077 37949515 ~ 37949777 (+)
LOC120556894 NA non-coding upstream 479235 37764777 ~ 37832619 (+)
G44387 LOC104935308,LOC107719244,LOC104932967 non-coding downstream 18893 38331380 ~ 38332050 (+)
G44402 NA non-coding downstream 97515 38410002 ~ 38412477 (+)
G44401 NA non-coding downstream 100340 38412827 ~ 38413939 (+)
G44417 NA non-coding downstream 143435 38455922 ~ 38456336 (+)
G44419 NA non-coding downstream 144194 38456681 ~ 38457162 (+)
LOC120557027 NA other upstream 137360 38166182 ~ 38174494 (+)
plekha6 plekha6 other upstream 215782 37960706 ~ 38096072 (+)
fezf2 fezf2 other upstream 1600559 36703255 ~ 36711295 (+)
trnac-gca_18 NA other upstream 2349244 35962539 ~ 35962610 (+)
G43924 NA other upstream 2645813 35664143 ~ 35666041 (+)
G44436 NA other downstream 300150 38612637 ~ 38612971 (+)
LOC120557667 LOC102775714,LOC103375741 other downstream 588085 38900572 ~ 38903056 (+)
LOC120557670 NA other downstream 640631 38953118 ~ 38981733 (+)
LOC120557680 NA other downstream 1434686 39747173 ~ 39774250 (+)
G44581 NA other downstream 1501473 39813960 ~ 39821908 (+)

Expression


Co-expression Network