LOC120557038 (si:ch1073-153i20.5,LOC103462478,LOC107386469,LOC103381127,LOC103395676,LOC102204254,LOC101485372)


Basic Information

Item Value
gene id LOC120557038
gene name si:ch1073-153i20.5,LOC103462478,LOC107386469,LOC103381127,LOC103395676,LOC102204254,LOC101485372
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 38325543 ~ 38325990 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039797054.1
GAAACACGAAAAATGTCAGGAAGAGGGAAAACCGGAGGAAAAGCCAGAGCGAAGGCTAAGACTCGCTCCTCCCGTGCAGGGCTCCAGTTCCCAGTCGGACGTGTCCACAGGCTGCTCCGTAAAGGAAACTACGCTCAGCGTGTAGGAGCCGGCGCCCCCGTCTACCTGGCGGCTGTGCTGGAGTACCTGACCGCTGAGATCCTGGAGCTGGCTGGAAACGCTGCCCGCGACAACAAGAAGACCCGTATCATCCCCCGTCACTTGCAGCTGGCTGTCCGCAACGACGAGGAGCTCAACAAGCTGCTGGGGGGAGTGACCATCGCTCAGGGAGGCGTGCTGCCCAACATCCAGGCCGTCCTGCTGCCCAAGAAGACTGAGAAGCCCGCCAAGAAGTAAACACCCGGAACCGGCTTCAACCAAACCAACAacggctcttttaagagccagA

Function

symbol description
si:ch1073-153i20.5 Predicted to enable DNA binding activity. Predicted to be involved in chromatin silencing. Predicted to be located in chromosome and nucleus. Predicted to be part of nucleosome. Orthologous to several human genes including H2AC20 (H2A clustered histone 20); H2AC21 (H2A clustered histone 21); and H2AC6 (H2A clustered histone 6).

NR:

description
PREDICTED: histone H2A, sperm-like

GO:

id name namespace
GO:0006334 nucleosome assembly biological_process
GO:0000786 nucleosome cellular_component
GO:0005874 microtubule cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003677 DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K11251 H2A; histone H2A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039797054.1 True 448 mRNA 0.60 1 38325543 38325990

Neighbor

gene id symbol gene type direction distance location
LOC120557035 LOC103395674,LOC101167724,LOC101068541,LOC105888650,LOC101170117 coding upstream 13056 38311854 ~ 38312487 (+)
LOC120557029 NA coding upstream 16559 38306826 ~ 38308984 (+)
LOC120557049 LOC104935308,LOC104932967 coding upstream 21182 38303664 ~ 38304361 (+)
LOC120557052 NA coding upstream 22769 38301095 ~ 38302774 (+)
LOC120557034 NA coding upstream 39931 38282988 ~ 38285612 (+)
LOC120557028 NA coding downstream 16453 38342443 ~ 38344251 (+)
LOC120557037 LOC105888650,LOC105896821,LOC103395674,LOC101068541,LOC105891059 coding downstream 20817 38346807 ~ 38347243 (+)
LOC120557646 LOC103371188,LOC100695319,LOC106525027,LOC101482544 coding downstream 40069 38366059 ~ 38409274 (+)
rbpjl rbpjl,LOC100707106 coding downstream 408177 38734167 ~ 38784058 (+)
LOC120557663 NA coding downstream 531177 38857167 ~ 38886428 (+)
LOC120557055 NA non-coding upstream 77223 38247303 ~ 38248320 (+)
LOC120557056 samd3,LOC101476819 non-coding upstream 97193 38227579 ~ 38228350 (+)
G44325 LOC104935308,LOC104932967 non-coding upstream 164849 38159937 ~ 38160694 (+)
G44265 NA non-coding upstream 375766 37949515 ~ 37949777 (+)
LOC120556894 NA non-coding upstream 492924 37764777 ~ 37832619 (+)
G44387 LOC104935308,LOC107719244,LOC104932967 non-coding downstream 5390 38331380 ~ 38332050 (+)
G44402 NA non-coding downstream 84012 38410002 ~ 38412477 (+)
G44401 NA non-coding downstream 86837 38412827 ~ 38413939 (+)
G44417 NA non-coding downstream 129932 38455922 ~ 38456336 (+)
G44419 NA non-coding downstream 130691 38456681 ~ 38457162 (+)
LOC120557027 NA other upstream 151049 38166182 ~ 38174494 (+)
plekha6 plekha6 other upstream 229471 37960706 ~ 38096072 (+)
fezf2 fezf2 other upstream 1614248 36703255 ~ 36711295 (+)
trnac-gca_18 NA other upstream 2362933 35962539 ~ 35962610 (+)
G43924 NA other upstream 2659502 35664143 ~ 35666041 (+)
G44436 NA other downstream 286647 38612637 ~ 38612971 (+)
LOC120557667 LOC102775714,LOC103375741 other downstream 574582 38900572 ~ 38903056 (+)
LOC120557670 NA other downstream 627128 38953118 ~ 38981733 (+)
LOC120557680 NA other downstream 1421183 39747173 ~ 39774250 (+)
G44581 NA other downstream 1487970 39813960 ~ 39821908 (+)

Expression


Co-expression Network