LOC120557040 (LOC106528837,LOC107102779)


Basic Information

Item Value
gene id LOC120557040
gene name LOC106528837,LOC107102779
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 38141593 ~ 38142268 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039797056.1
CCGCCCTCTGCGGCTCTGCTGGAAGCCTCTTTTCTGGTTGGTCTGGCTGGAAATGATCAGCTCCCGCGCTCCGCGGAGATAAAAGGAGGGTTTCAGCTGTTGGGAAAACATTTCTCTGAGTCGTGACTTTAGAAAACATCTGAAAATGAGTGGCCGAGGGAAAACCGGAGGAAAAGCCAGAGCTAAGGCAAAGACCCGCTCCTCCCGTGCAGGGCTCCAGTTCCCAGTCGGCCGTGTCCACAGGCTGCTCCGTAAAGGAAACTACGCTCAGCGTGTGGGAGCCGGCGCCCCCGTCTACCTGGCGGCTGTGCTGGAGTACCTGACCGCTGAGATCCTGGAGCTGGCTGGAAACGCTGCCCGCGACAACAAGAAGACCCGTATCATCCCCCGTCACCTGCAGCTGGCTGTCCGCAACGACGAGGAGCTCAACAAGCTGCTGGGCGGAGTGACCATCGCTCAGGGCGGCGTGCTGCCCAACATCCAGGCCGTCCTGCTGCCCAAGAAGACCGAGAAGCCCGCCAAGAAATAGATACCCGGAACCGGCTTTTACCGACCAAACAacggctcttttaagagccacacACTTCTAACTAAAGAGAGAGCTCCTTACTGTGTCTGTCTAGTGTTCATATTGTGAGAGTTTTAAATTATCTTCATTGTACCAACAATTTCAGCA

Function

NR:

description
PREDICTED: histone H2A-like

GO: NA

KEGG:

id description
K11251 H2A; histone H2A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039797056.1 True 676 mRNA 0.56 1 38141593 38142268

Neighbor

gene id symbol gene type direction distance location
golt1a golt1a coding upstream 37647 38097298 ~ 38103946 (+)
LOC120558220 NA coding upstream 184617 37951640 ~ 37956976 (+)
fhit fhit,LOC106632879 coding upstream 406276 37312062 ~ 37735317 (+)
cadpsa LOC103364890 coding upstream 1465338 36431405 ~ 36676255 (+)
LOC120556721 NA coding upstream 1773183 36366520 ~ 36368410 (+)
LOC120557051 LOC106958509,LOC107690788,LOC107671222,LOC106963510,LOC107382435 coding downstream 4472 38146740 ~ 38147062 (+)
LOC120557039 si:dkey-261m9.15,LOC103462478,LOC102204254,LOC107386469,LOC103379246,LOC101485372,LOC103381127,LOC103395676 coding downstream 7703 38149971 ~ 38150381 (+)
LOC120557047 LOC104932967,LOC104935308 coding downstream 93295 38235563 ~ 38236230 (+)
LOC120557030 NA coding downstream 95410 38237678 ~ 38239157 (+)
LOC120557036 LOC101068541,LOC105888650,LOC105896821,LOC105891059,LOC105893409 coding downstream 98414 38240682 ~ 38241142 (+)
G44265 NA non-coding upstream 191816 37949515 ~ 37949777 (+)
LOC120556894 NA non-coding upstream 308974 37764777 ~ 37832619 (+)
G44247 NA non-coding upstream 390281 37751067 ~ 37751312 (+)
G44232 NA non-coding upstream 839077 37302224 ~ 37302516 (+)
G44153 NA non-coding upstream 1462297 36678292 ~ 36679296 (+)
G44325 LOC104935308,LOC104932967 non-coding downstream 17669 38159937 ~ 38160694 (+)
LOC120557056 samd3,LOC101476819 non-coding downstream 85311 38227579 ~ 38228350 (+)
LOC120557055 NA non-coding downstream 105035 38247303 ~ 38248320 (+)
G44387 LOC104935308,LOC107719244,LOC104932967 non-coding downstream 189112 38331380 ~ 38332050 (+)
G44402 NA non-coding downstream 267734 38410002 ~ 38412477 (+)
plekha6 plekha6 other upstream 45521 37960706 ~ 38096072 (+)
fezf2 fezf2 other upstream 1430298 36703255 ~ 36711295 (+)
trnac-gca_18 NA other upstream 2178983 35962539 ~ 35962610 (+)
G43924 NA other upstream 2475552 35664143 ~ 35666041 (+)
LOC120556915 NA other upstream 2655358 35463772 ~ 35486235 (+)
LOC120557027 NA other downstream 23914 38166182 ~ 38174494 (+)
G44436 NA other downstream 470369 38612637 ~ 38612971 (+)
LOC120557667 LOC102775714,LOC103375741 other downstream 758304 38900572 ~ 38903056 (+)
LOC120557670 NA other downstream 810850 38953118 ~ 38981733 (+)
LOC120557680 NA other downstream 1604905 39747173 ~ 39774250 (+)

Expression


Co-expression Network