ptpra (ptpra)


Basic Information

Item Value
gene id ptpra
gene name ptpra
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 10232892 ~ 10257094 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039797080.1
CCTCCCCTCTTTTCGGGTTTCCTCTGGGCGCTACAGGAGTTGTGGACCACGCTGTGCGAATGAGTGATTGATGCCAACTTCGCTTCTTCAGGGCAGAATGGGTGTGTGTCCCCTGCTCCTGCTGCTCGCACTAGCCCTCGCGGCCTCAGCCCAGGATCATGTCCCCATCACAAGTCCTCCTAATATCACTGCCAAACCCACAGACCCCCCAGCCACACCCTCCCTCAACTTCACAGTCGCACGCACAAAAGCCCCCACAGGCCCACCCACAACGCTCGCCCCCACAGTCTTCCTGGCGacgacaataacaacaacaacaacaaccacaagcCCAGCTGGTGAGGAGATGTACAACTGGCGGGTCCATGCCACCGGGCGGGTGTTACCAGTCCCTGCCCCCTCACCTCCAGCTCCAACTCATGCCCTCCAGGCACAACCGAGCACCGagcctccccctcctcccaccCTGGCCGGGGTTGACAACAAGACCACAGCCTCCCCTACAGACGCCCTGATTTCAGATTATATTGATGAGGATGTATACACTGAGGCGACTGAGACCACCACAGAACCTGGGATGGGGTTCACCTCAGACAACAGCCCACATGACAACAACCAGTCTGATGACGTGCCAATCATAGCAGTCATGGTGGCCCTGTCCTCCCTGCTggtcatcatcttcatcatcatcatcctctacATGCTCAGGTTTAAGAAGTACAAGCAGGCGGGAAGCCATTCAAACTCCTTCAGGCTGACCAATGGTAGATCAGATGATACAGAACTTCAGAGCGTCCCACTATTGGCCCGTTCACCCAGCACAAACAGGAAGTACCCGCCCCTTCCCGTCGACAAACTCGAGGAAGAAATGAACCGTCGCATGGCCGATGACAACAAGCTCTTCAGGGAAGAGTTTAATTCGCTGCCAGTCTGCCCCATCCAGGCATCATGCGACGCTGCTTCCAAAGAAGAGAATAAAGAAAAGAACAGATATGTCAACATCCTGCCATATGATCACTCCAGAGTGCATCTCTCATCTCTGGAGGGAGTCCCAGACTCTGACTTCGTCAACGCCTCCTTTATAAATGGTTACCAAGAGAAAAATAAGTTTATTGCAGCTCAAGGGCCCAAGGAGGAAACAGTAAATGACTTCTGGCGGATGATCTGGGAGCAGAACACAGTCACCATTGTCATGGTGACCAATctgaaggagagaaaagagTGTAAGTGTGCCCAGTACTGGCCGGACCAGGGCTGTTGGACATACGGGAACATCCGCGTGTCTGTAGAGGACACAATGGTTCTGGTGGACTACACAATCCGCAAGTTCTGCATCCAACAGGTGGGAGATGTGTCTGGGAAGAAGCCTCAGAGGCTCGTCACCCAGTTCCACTTTACCAGCTGGCCGGACTTCGGGGTGCCCTTCACCCCTATTGGCATGCTCAAGTTCCTCAAGAAAGTCAAGAATTATAACCCCCAGTATGCCGGGGCCATTGTGGTCCATTGTAGTGCGGGCGTGGGGAGGACAGGTACCTTCATTGTGATCGATGCCATGTTGGACATGATGAACACTGAAAGGAAGGTGGACGTGTTTGGCTTTGTCACCAGGATCAGAGCCCAGCGCTGTCAGATGGTCCAGACTGATATGCAGTATGTGTTCATCTTCCAGGCGTTGTTAGAGCACTACCTGTACGGAGACACAGAGCTGGAGGTGACTTCTCTGGAGTCCCACCTAGCCAAACTATACTCCCCCTCACCTGGAGCTGGCTGCAGTGGGCTGGAGGCTGAATTCaagAAACTGACATCCATCAAGATTCAGAATGACAAGATGAGAACAGGGAACCTGCCCGCCAACATGAAGAAGAACCGAGTCCTGCAGATCATTCCATATGAGTTCAACAGAGTGATCATTCCAGTCAAACGAGGAGAGGAGAACACAGACTACGTCAATGCCTCTTTCATTGATGGCTACCGCCAGAAGGACTCCTACATGGCGAGCCAGGGCCCCCTGCAGCACACCATAGAGGACTTCTGGAGGATGATCTGGGAGTGGAGAAGCTGCTCCATAGTCATGCTCACTGAGCTGGAGGAGAgagggcagGAAAAGTGCGCTCAGTATTGGCCTAGTGATGGAGTGGTGGTCTTTGGGGACATCGCAATCGAGATtaaaagggaggaggagagcgAGAGCTACACAGTGCGTGACCTCTTGGTCACCAACAACAGGGAGAACAAGGCTCGGGCGGTGCGTCAGTTCCATTTCCATGGCTGGCCAGAGGTGGGCATCCCCGCTGACGGTAAAGGCATGATCAACATAATCGCTGCGGTTCagaaacaacagcagcagtcTGGCAATCACCCCATAACTGTGCACTGCAGtgctgGTGCTGGCCGGACGGGGACTTTCTGTGCGTTGAGTACAGTCCTGGAGAGGGTGAAGGCAGAGGGCATCCTGGATGTCTTCCAGACAGTCAAGAGCCTCAGACTGCAGAGACCACACATGGTGCAGACACTGGAGCAGTACGAGTTCTGCTACAAAGTGGTCCAGGAGTATATCGATGCCTTTTCTGACTACGCCAACTTCAAGTAGGAACCTGCcatggaaggatggatggatggatgtctgCATACACTTCATACAAGCATATGCACGCACCagaacacacacgcatacattaCCATGCAGAAAGCTGCATATTCCCATctgatggatttaaaaaaaagaaaagactcatcACAACTTGATCTGTGGATGGGATGAACTGCCCGCAGGAAAAGGGAACCGAGGCCTTGGCCCGGAGGACAGGGCAGCGCACTCGGACAGACAAAATAACGGAGATGCCTTCTTGAATATTTTGTAATATTGGTCTTGTTAATACAGCCCTTCACCCCTATTTGCTATCTCCcccatatgtatatatacttaACTGTGTTGCATCTTATTACTTTGGTTTCAGACACAGTTTTGAGTTTGGCTGCATTTTTGGGTGGCACctgtaatgtattttattggtatatatata

Function

symbol description
ptpra Predicted to enable protein tyrosine phosphatase activity. Acts upstream of or within convergent extension involved in gastrulation; regulation of protein kinase activity; and retina development in camera-type eye. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Is expressed in blastomere; head; nervous system; and pectoral fin. Orthologous to human PTPRA (protein tyrosine phosphatase receptor type A).

NR:

description
PREDICTED: receptor-type tyrosine-protein phosphatase alpha

GO:

id name namespace
GO:0035335 peptidyl-tyrosine dephosphorylation biological_process
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG:

id description
K18032 PTPRA; receptor-type tyrosine-protein phosphatase A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039797080.1 True 3023 mRNA 0.52 23 10232892 10257094

Neighbor

gene id symbol gene type direction distance location
idh3b idh3b coding upstream 2213 10219726 ~ 10230679 (+)
drd5a drd5 coding upstream 188343 10040300 ~ 10044549 (+)
otop1 otop1 coding upstream 194018 10029586 ~ 10038874 (+)
tmem128 tmem128 coding upstream 203405 10016907 ~ 10029487 (+)
lyar lyar coding upstream 216128 10013846 ~ 10016764 (+)
gnrh2 NA coding downstream 7334 10264428 ~ 10266475 (+)
zmat1 NA coding downstream 9721 10266815 ~ 10274959 (+)
cd8b NA coding downstream 21359 10278453 ~ 10282520 (+)
cd8a NA coding downstream 32976 10290070 ~ 10293048 (+)
pcsk1 pcsk1 coding downstream 83586 10340680 ~ 10355619 (+)
G37177 NA non-coding upstream 26135 10204789 ~ 10206757 (+)
G37163 NA non-coding upstream 180555 10052128 ~ 10052337 (+)
G37104 NA non-coding upstream 226036 9928035 ~ 10006856 (+)
G37112 NA non-coding upstream 270315 9957835 ~ 9962577 (+)
G37064 NA non-coding upstream 499541 9731857 ~ 9733351 (+)
G37186 NA non-coding downstream 156 10257250 ~ 10260329 (+)
G37198 NA non-coding downstream 52973 10310067 ~ 10311163 (+)
G37215 ube2r2 non-coding downstream 145164 10402258 ~ 10434702 (+)
G37238 NA non-coding downstream 196391 10453485 ~ 10453731 (+)
G37337 NA non-coding downstream 269605 10526699 ~ 10526936 (+)
prickle2b prickle2 other upstream 376236 9760233 ~ 9856656 (+)
G36744 NA other upstream 2004172 8227762 ~ 8228720 (+)
hcfc1a hcfc1,LOC102799381,LOC102206223 other upstream 2926549 7288907 ~ 7306343 (+)
G36458 LOC100304472,LOC107385856 other upstream 2960524 7209996 ~ 7272368 (+)
si:dkey-245f22.3 NA other upstream 3045678 7183199 ~ 7187214 (+)
G37197 NA other downstream 48093 10305187 ~ 10309996 (+)
glrx glrx other downstream 130814 10387908 ~ 10396187 (+)
G37397 LOC102299939,LOC103353648,LOC103366902,LOC102208776,LOC100700987,LOC104921056 other downstream 740136 10997230 ~ 11012909 (+)
G37525 evc2 other downstream 1094984 11352078 ~ 11352387 (+)
LOC120557336 LOC103359259,LOC100704408,LOC101476502,LOC102796717,LOC102216118 other downstream 1128090 11385184 ~ 11394398 (+)

Expression


Co-expression Network