idh3b (idh3b)


Basic Information

Item Value
gene id idh3b
gene name idh3b
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 10219726 ~ 10230679 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039797081.1
ATGCATACATATGGGATGCCAACTGCCGTAAAACCCAGAAATAGAAGAAGAACTGGCGGTTTACCACTGCTccaccaaagaagaagaagctcaGTCGCAATCACTTCATCTGTAACAATGGCAGCCGCCCTGAGAGGAAGCTTGGTAACATTGGTCAAGGGCCTGAGCGGCCCCCGGTGGCAGCAGCTGGCCTCTCGACCATTGAGTGTGTCTGCTGCTTTGTGTGGCCCAGAAGCCCCACCCGCCCGTGCTGATGCTACCTTCAAGGTCACAATGGTGCCAGGGGATGGAGTGGGACCTGAGCTGATGACTGCTGTCAAGGAAGTGTTCAAGGCAGGAGATGTCCCAGTAGAATTTGAGGAGTTTCACCTGAGCGAGGTACAGAACATGGCCAGTGACGAGAAGCTGGAGCAAGTGTTAACCTCAATGAAGACCAACAAAGTGGCAATGAAAGGAAAGATTCACACACCCATGGAATTTAAAGGGGAGCTGGCTTCATACGAGATGAGACTGAGGCGTAAACTGGACCTGTTTGCTAATGTGGTTCATGTGAATAGCCTGCCGGGCTACAGCACTCGCCACAACAACCTGGACCTGGTCATCATCCGCGAACAGACCGAGGGGGAGTACAGCTCCCTGGAGCACGAGAGTGTGACGGGTGTGATCGAATGTTTGAAGATCATCACCAGAGATAAGTCACGGCGCATCGCCAAGTTCGCTTTCGATTACGCCACCAAGAAGGGACGAAGCAAGGTCACAGCTGTTCACAAGGCCAACATCATGAAATTAGGTGATGGCCTGTTTCTGCAGAGCTGTGCAGAGATTGCCCAACTGTACCCCAAAATCAAATATGAGACCATAATCATTGATAACTGTTGCATGCAGCTGGTCCAGAACCCATACCAGTTTGACGTGCTGGTGATGCCCAACCTGTACGGTAACATCATCGATAACCTGGCAGCGGGGCTGGTTGGAGGAGCAGGAGTTGTTCCTGGGGAAAGCTACAGTGCAGAGTATGCTGTGTTTGAGACTggtGCACGCCACCCATTTGCACAAGCTGTAGGAAGGAACATTGCCAACCCCACAGCCATGCTGCTGAGTGCTGCTAACATGCTCAGGCACCTCAATCTGGAATATCACTCCCAAATGGTGTCAGATGCTGTCAAGAGGGTCATCAAACAGGGAAAGGTACGGACACGAGACCTTGGCGGGTACTCTACCACTGGCGACTTTGTGCGTGCTGTTGTGGAAAACCTGCGTCACCAACCTGTTAACTAAGATGTATCGTCGCACTCGTCACTGATATTTCCTTAAATCTGGACATTGTTCTTAACATGAACTAGACGCATGTTAAGACTCCCCTCACCTCTCATTGCCAGATGACCGTTGTGCCACACATTTTTGACAAACGCCACCAGTTGCATCATAATATATATGGTTTATACCAGATTTGCTAAAAGATCCAGTGGAATCAATGGTGCCTTGTGTTGTAATTTACTAAAATATGTGCAGTTCACGAGGCTTCCTCTCATGGATTTACATCATATCTATATTATCTTCCCTCATATTAACTGTCCATCCAATGCATCTTCTACTGTTGCAGTTTTTACTTGACTGATTGAGATCATCTTTTCACTCATTCTGGGGGACCTTTGTGTCCACTTATTTTGATGTCTTGGTGCTTGTTGCATCAACCATGTTGACCATACAGACTACCTCTCTGCTATCACACATACAGTCTGTAAAGCAACCAGTTTATATTGGCTGATCTGCTTTTGCCTCACACTTCAGCAGCAACTTACCTCACTTGTATCTCATTTGCACATTGTAAATCAATATACACTATGGTATCACTGCTACATCATGATCAAATAAGACCGTAATATTTCCGACCTAAAAATGTGTTCACGTTTTTAATAAAACTCTGTTCTGCCATTGCAGTACTGTAAAGccagcagagtttttttttgcagtgagtTACTGTATTGCAAAGGCAAACCTATCCTAATGCAAAATTCAGGTTTGTTGCTGGATATTATCAATACAAATGATATTTTAACATTAGCCTTTCAAGAAAACCAAAAATATAATACTTTCAGGTATTACTCCATtgactgagtaaaaaaaaaaaactggcaggTGTTATAACCAATTTAGAAAtggtataatcatttattttacagtttaataGCCACAGAAAATCTCCCTTTATGATTGTCACATTTCCCCTAAAGCCAGTCCATTGTGTAAATGTTGTGCAGTGCACAACATTTACACAATGTTGAATTATGAATTGGTATACTGCAGATTATCTTAATTTTTAGTTTTGTagcaaaaaaatgaattaaatggGTGAAGTCATACttttgatatatttatatatcattTCCAAGGACTCCTAAAAACAAGTCTTGTATAAGATGGTGCTGCTCGTTCCCACAGAACTTTTCATGCCAccaatgctgaaagagtttaaaACACTGCTCGGTCTCCTCACTTTggctgtcattctttttttcttactgtGCTACAATTTAAGACTTCAAGTAGTCGGTTAACCACAAATAATAAGAAATAAAGTAAGATATAAGTCATTGAACTCTTGTTTTGACCTTGTGGTGCAatctacttttttatttttatttttttttactttctagaGAATGTACCACCACCAGTGTAAACTGCATCatgtcctttttttattttttgttcatgAAATTTAGTTTCCCTGATTAGGGAATAGTTTTCCCTAATGAATATGTTATGGAGATTTCATACCTGCAACTTCTCAAAAGTGTGACGTCATTTTGAATAAATAACATTGTCTTTTCTTAATAA
>XM_039797082.1
AAACCCAGAAATAGAAGAAGAACTGGCGGTTTACCACTGCTccaccaaagaagaagaagctcaGTCGCAATCACTTCATCTGTAACAATGGCAGCCGCCCTGAGAGGAAGCTTGGTAACATTGGTCAAGGGCCTGAGCGGCCCCCGGTGGCAGCAGCTGGCCTCTCGACCATTGAGTGTGTCTGCTGCTTTGTGTGGCCCAGAAGCCCCACCCGCCCGTGCTGATGCTACCTTCAAGGTCACAATGGTGCCAGGGGATGGAGTGGGACCTGAGCTGATGACTGCTGTCAAGGAAGTGTTCAAGGCAGGAGATGTCCCAGTAGAATTTGAGGAGTTTCACCTGAGCGAGGTACAGAACATGGCCAGTGACGAGAAGCTGGAGCAAGTGTTAACCTCAATGAAGACCAACAAAGTGGCAATGAAAGGAAAGATTCACACACCCATGGAATTTAAAGGGGAGCTGGCTTCATACGAGATGAGACTGAGGCGTAAACTGGACCTGTTTGCTAATGTGGTTCATGTGAATAGCCTGCCGGGCTACAGCACTCGCCACAACAACCTGGACCTGGTCATCATCCGCGAACAGACCGAGGGGGAGTACAGCTCCCTGGAGCACGAGAGTGTGACGGGTGTGATCGAATGTTTGAAGATCATCACCAGAGATAAGTCACGGCGCATCGCCAAGTTCGCTTTCGATTACGCCACCAAGAAGGGACGAAGCAAGGTCACAGCTGTTCACAAGGCCAACATCATGAAATTAGGTGATGGCCTGTTTCTGCAGAGCTGTGCAGAGATTGCCCAACTGTACCCCAAAATCAAATATGAGACCATAATCATTGATAACTGTTGCATGCAGCTGGTCCAGAACCCATACCAGTTTGACGTGCTGGTGATGCCCAACCTGTACGGTAACATCATCGATAACCTGGCAGCGGGGCTGGTTGGAGGAGCAGGAGTTGTTCCTGGGGAAAGCTACAGTGCAGAGTATGCTGTGTTTGAGACTggtGCACGCCACCCATTTGCACAAGCTGTAGGAAGGAACATTGCCAACCCCACAGCCATGCTGCTGAGTGCTGCTAACATGCTCAGGCACCTCAATCTGGAATATCACTCCCAAATGGTGTCAGATGCTGTCAAGAGGGTCATCAAACAGGGAAAGGTGCGCACCGGAGACCTGGGGGGCTATGCCACAAGCGACGAGTTCACCCGGGCTGTCATTGCTAACCTGGCAGTCTGAAAGTGTTGTATTTGCATTGTATTATCTGTCAGCTGCTGAGACGCACACACTTTTTGTTATTTACATCCTGTTTGACAGATCTCCTGACTGattatacacatacagtatattccagCAACAGGGTTCACATATTTTCCAATTTAAACACAGTGAAATGCAGATGAAATGTGCAGCTAtaatctccaaaaaaaaaactctctgagCATAACACATTAACTATGACATCTAAGG

Function

symbol description
idh3b Predicted to enable NAD binding activity; isocitrate dehydrogenase (NAD+) activity; and magnesium ion binding activity. Predicted to be involved in isocitrate metabolic process and tricarboxylic acid cycle. Predicted to be active in mitochondrion. Is expressed in several structures, including alar plate midbrain region; digestive system; immature eye; optic tectum; and pronephric duct. Human ortholog(s) of this gene implicated in retinitis pigmentosa 46. Orthologous to human IDH3B (isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit beta).

NR:

description
isocitrate dehydrogenase [NAD] subunit beta, mitochondrial isoform X1

GO:

id name namespace
GO:0006099 tricarboxylic acid cycle biological_process
GO:0051287 NAD binding molecular_function
GO:0004449 isocitrate dehydrogenase (NAD+) activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K00030 IDH3; isocitrate dehydrogenase (NAD+)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039797081.1 True 2841 mRNA 0.42 11 10219726 10229981
XM_039797082.1 False 1467 mRNA 0.50 11 10219756 10230679

Neighbor

gene id symbol gene type direction distance location
drd5a drd5 coding upstream 175177 10040300 ~ 10044549 (+)
otop1 otop1 coding upstream 180852 10029586 ~ 10038874 (+)
tmem128 tmem128 coding upstream 190239 10016907 ~ 10029487 (+)
lyar lyar coding upstream 202962 10013846 ~ 10016764 (+)
thoc7 thoc7 coding upstream 293244 9921081 ~ 9926482 (+)
ptpra ptpra coding downstream 2213 10232892 ~ 10257094 (+)
gnrh2 NA coding downstream 33749 10264428 ~ 10266475 (+)
zmat1 NA coding downstream 36136 10266815 ~ 10274959 (+)
cd8b NA coding downstream 47774 10278453 ~ 10282520 (+)
cd8a NA coding downstream 59391 10290070 ~ 10293048 (+)
G37177 NA non-coding upstream 12969 10204789 ~ 10206757 (+)
G37163 NA non-coding upstream 167389 10052128 ~ 10052337 (+)
G37104 NA non-coding upstream 212870 9928035 ~ 10006856 (+)
G37112 NA non-coding upstream 257149 9957835 ~ 9962577 (+)
G37064 NA non-coding upstream 486375 9731857 ~ 9733351 (+)
G37186 NA non-coding downstream 26571 10257250 ~ 10260329 (+)
G37198 NA non-coding downstream 79388 10310067 ~ 10311163 (+)
G37215 ube2r2 non-coding downstream 171579 10402258 ~ 10434702 (+)
G37238 NA non-coding downstream 222806 10453485 ~ 10453731 (+)
G37337 NA non-coding downstream 296020 10526699 ~ 10526936 (+)
prickle2b prickle2 other upstream 363070 9760233 ~ 9856656 (+)
G36744 NA other upstream 1991006 8227762 ~ 8228720 (+)
hcfc1a hcfc1,LOC102799381,LOC102206223 other upstream 2913383 7288907 ~ 7306343 (+)
G36458 LOC100304472,LOC107385856 other upstream 2947358 7209996 ~ 7272368 (+)
si:dkey-245f22.3 NA other upstream 3032512 7183199 ~ 7187214 (+)
G37197 NA other downstream 74508 10305187 ~ 10309996 (+)
glrx glrx other downstream 157229 10387908 ~ 10396187 (+)
G37397 LOC102299939,LOC103353648,LOC103366902,LOC102208776,LOC100700987,LOC104921056 other downstream 766551 10997230 ~ 11012909 (+)
G37525 evc2 other downstream 1121399 11352078 ~ 11352387 (+)
LOC120557336 LOC103359259,LOC100704408,LOC101476502,LOC102796717,LOC102216118 other downstream 1154505 11385184 ~ 11394398 (+)

Expression


Co-expression Network