amigo3


Basic Information

Item Value
gene id amigo3
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 44216413 ~ 44220156 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039797100.1
CACAGCTCACCCTGAGCTGAGAGACGAGTGGTAAAGAGACAGGAAACTGCACTCACATCTggacacatcaacacacacaaacacagatataTATCTACGTATATATAAACACATCTGGAGAGGAATAACTTCTATCTGAGGCTCGGAGGAGAGACGAGAAAGAAGCAGAGCTTCACAGATCTCTCTCATCCTCCCACCACTGAAGGAAGAAAATCCGCTGCAGGAGAAAGACAGCGAGCGGCAGAGCGGCGTGTGAGCGTTTGCTGCTGCCTGCgacaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagtggACAGGATGCAGAAAATCTGATCAGCAACTTGGGGCGGCGTGTGGGCGGCAGACAGCTGGGGCTGTGATTCCCAGAAACCCCGACTCGGCATGAAAACAAAGAGATGCTACAACTGAGACGAAGCTCCTGCATCACGAGACAGAGTCAAACCCGTTTACGTCTGAGGAAAACCAGTTTCACGTCCACATGAGGCTGGAACGAGGACGCAAAAGGCCGGCGACGCAGAGATAAAAGCATCCGGAGAGGACTGTGTGTTGGAGGTACAAAAGAGCAGATATGGGATAAATGGATTTCTAAAAAAAAGGTGCCAGGAAGTCATGCTGAACACTCCACACATTGTTTCCTCTGGATGGAATAAAACCCAAGACACAGGAAGAATATATTTCAACACCTGcgccttctctttttttcctcttttcagAACACATGGATGAGTGTTAAAGCGGCTAAACTTTGACTATCAAACGTCTACATTATCTTTTAAACTCTTGGCAGAAAACAGTTGGATTTTCTTCTTCCATCTGCTGAACACAAATCACAGAGCAGAAGGACTTTGTTTGTGGACAGCGGCACACCTGGACTTTACAAACTGTgccttttctttcttgtttGCCCTGACCAGATGGCTGCCTGGCTGGCAGGTGGATGCAGAAGCGATCGCCTCGTTTAACATTAACCGGGTTTCACAAAACAAACGAGCATGCCGGAGCGCGAGCTGGAGGCGTAAACGAGACCCAGTGAGCGTGCGTCAcagtgatgttgttgttgtgccCCGTAGCTCAAATGCAAATGAGGCTTCTGTCTTAGCTGTGTCTTGAAAATGATCAGAGAGATATTTAAATCATTTACACAGATCTATCCGCCTGCAGAAGGAACATCAGCAGACGAGGCTAAGTGATAAAAATAAAGTGTACAGCGTGTCATGTTTGTCAGGATGAGAGGACTCTCgcagtagagctgcaaaggttaacaattaaaataactgccaactatttggtgattgattaattggtttgagtcatttttttgaTGCAAAACAATGACTTCATTCTTTTATTGCAGCtcattaaatgtgaatattttctagtttcttctctcctctgtgagaGTAAActcaatatctttgagttgtggacagaacaagacatttgaggacgtcttCTTGGGCTACTGATCCACTGTGAAAATAATcggtagttgcagccctaaataaGAGCAGATTATTTAGACAAATCTGACTGTTGACTCTTTTCCTCCTCCCTGCTGTCTCATTTTGTGTCAAGTCAGAGTTATTATTCCTCCTGATAGCCTGACCTCTTTACCTCTCTGTTATCCTTTCTTATTCACAGCTTTGGCATTGGGAAACAATAATCCAcactttatagaccaaacaactaatcgatcaaTTGAGGAGCTAATCGACACATTAATCAATGATGAAAATTGGAAGTATGAAGGATGTAAAACTTGTGTAAAGAGCAGAGAGTAACAGAGATATAAGCTGGGTGTATAAACAGAGATATAAGCTGGCACCATGTTGTATGTCGTTGGGTTTGTGCCGGGTGTGGTGTCTCTGGCCGTTACAGCAGCGTCTCCGTCACGCTGGTCTGTTGTTGTGCTGTTAGTTTGTTTCCAGCTGCGCTCGGTCCAGGCcaccatctgtctgtctccggGCTCCTCGCAGGCAGGCGGATGCCTCTGTGCCTCGGACATCCTCAGCTGCACGGCCGCCGGGCTCGATCACATCCCCGCGGAGATGCCCGTCTCCGTCGTCACTCTGGATCTCAGCCACAACCGCATCGGGCAGTTGGATGCCGGCGGCTTTCAGGGACTCTCTCGATTGGAGACATTGCGTATAGCGCACAACCAGCTGACTACGATTCACCCGGGGGCATTTCGAAACACCTCTGGGACTCTGCTGCGACACCTGGACCtgtcgtccaatcagctgcgtGTTCTGGAGCGGCATTATTTCCTCGATATGCCAGGATTGGAGGAACTGCTGCTGTTCAACAACCGCATAGTCCACGTGGAGAGCAGAGCTCTGGCGGGACTGGGCAGCCTCCGAAAGGCCTACCTCAGTCACAACCGCCTCACCGACTTCCCTTTCTTTTCCTTCCAGGAGCATAGCCACCCTCACCTGTCCATGCTCGACCTGTCCTCCAACCGCCTGCCCAAACTGCCCCTCGAGGACATATCAAACTTACCCCTGTCCGTGCAGCGAGGACTCTACCTTCACAACAACTCGCTGTTGTGCGAGTGCGCCATGTACGGACTCTTCCGGCACTGGGAACAGCAAGGCTTTGCCTCTGTGAGAGACTTCCAACAAGAGTACACCTGTCTGGTTTACGGGATACAGAGAGGGACGGTGCGCTTCTTCCAACACAGACGCTACTTTGACAAATGCAACTTGACCGGGACAAGTCAGGGGCTGAAGACGCAAGAGAGCAGCGTTTCCGTGAAGGTTGGGAGACGACTGCTGCTGCACTGCCTCACTACTCTCGCCGCAGAACACGTGACGTTTCTCTGGGTGTCGCCGAATCAGGAGTACGTGGCGCCACCGGGAAACAACGGCTCCTTGAAGATGTACGCCAACGGCAGCTTGGAGATCGTGGCGGCCCGTGCGGAGGACGCTGGGATCTACTGGTGCATGTCGTTGGATCGGGAGCATCGACGCAACGAGACACGAGAGGTCAACGTGACCGTGCTGCTGCATCAAGACGGCGAACATCACGAGCCATTCAACACCGGGTTCACCACCCTACTAGGCTGCGTGGTGAGCCTGGTGCTCGTGCTCATGTACCTCTACCTGACGCCATCGCTACCGACTGTACAGcatgtgccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacccccccccccacccacaaaaccaccccccccccccccccccccccccctggagCCAATCAAAGAGCAGCAGAATGGCAAAATCAGGGCGGGACCGGGCGGACATTTGGGTCCAGGGTTACTGTTAGAAGCAGAGCAGCATGCAAAGCTTCACAGCCAGTCGCAGCCGCCGCCGAGGGCGGGGGAGACGGACTGCATCATGTCCATGTTCTCAGACACTCCCATCATGCTGCCATagcaacagagagacacagactgGCACTATCATCACCTCTcactcccttcctccctcctctgatCCTGCGTTTCCTCCTCAACACCTCCCACTGCCCCCAGCACTGgggttgggtatcatttgggttttttccgattACCGCTGCTAAAACCAGACTTTTAAGATGGTGCCAGTGACTAAACAAAGCAATCAattaaaacggtgcctgaaccgatactttaacaaaagaaaagcacagaACGACTTGTTTAATgataaggccatatggtcaaactTAAAAGTGCTG

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG:

id description
K22529 AMIGO; amphoterin-induced protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039797100.1 True 3743 mRNA 0.50 2 44216413 44220156

Neighbor

gene id symbol gene type direction distance location
LOC120558025 LOC102289652,LOC101467503,LOC103368898 coding upstream 108722 43895634 ~ 44107691 (+)
nicn1 nicn1,LOC103371623 coding upstream 637408 43568609 ~ 43579005 (+)
LOC120558241 NA coding upstream 705954 43510346 ~ 43510459 (+)
LOC120557146 NA coding upstream 773889 43412120 ~ 43442524 (+)
manf manf,LOC102787989 coding upstream 1565082 42645340 ~ 42651331 (+)
LOC120557212 NA coding downstream 130251 44350407 ~ 44352218 (+)
LOC120557215 mkrn2os coding downstream 262669 44482825 ~ 44486761 (+)
LOC120557218 rbm39,LOC106937047,LOC103363772,LOC103131234 coding downstream 279888 44500044 ~ 44510159 (+)
isy1 LOC106531751,LOC101464245,LOC102301427 coding downstream 307215 44527371 ~ 44533309 (+)
zgc:77375 NA coding downstream 313251 44533407 ~ 44545229 (+)
G45597 NA non-coding upstream 46368 44168532 ~ 44170045 (+)
G45593 NA non-coding upstream 57572 44158453 ~ 44158841 (+)
G45592 NA non-coding upstream 58214 44157905 ~ 44158199 (+)
G45585 NA non-coding upstream 106889 44092674 ~ 44109524 (+)
G45584 NA non-coding upstream 153152 44063058 ~ 44063261 (+)
G45612 NA non-coding downstream 53906 44274062 ~ 44347251 (+)
G45634 NA non-coding downstream 138136 44358292 ~ 44358567 (+)
G45636 NA non-coding downstream 141006 44361162 ~ 44390201 (+)
G45640 NA non-coding downstream 150655 44370811 ~ 44373154 (+)
G45831 NA non-coding downstream 494017 44714173 ~ 44714690 (+)
G45577 NA other upstream 259240 43956827 ~ 43957173 (+)
G45557 NA other upstream 377561 43838384 ~ 43838852 (+)
rbm15b rbm15b,LOC102788268 other upstream 1558025 42654788 ~ 42658388 (+)
G45237 NA other upstream 1914518 42278285 ~ 42301895 (+)
map1lc3a map1lc3a,LOC107551126 other upstream 2304296 41905529 ~ 41912117 (+)
G45635 NA other downstream 140630 44360786 ~ 44468991 (+)
G45647 NA other downstream 183747 44403903 ~ 44407449 (+)
tsen2 tsen2,LOC102785813 other downstream 268800 44488956 ~ 44499296 (+)
LOC120557302 kcnq2,LOC107384874,LOC103370155,LOC108251245 other downstream 492259 44712415 ~ 44744790 (+)

Expression


Co-expression Network