thumpd3 (thumpd3,LOC102800238)



Basic Information


Item Value
gene id thumpd3
gene name thumpd3,LOC102800238
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 16897070 ~ 16906824 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence


>XM_039797180.1
ATTAAATTTGTGGAGATGATGCTTTTATTCTGGAGCATTCCCGTCGGAAGCCTCGGTATTGTTGCAGCAGCTGAGTGGAAGCATGTTTCCGCCTCGTGTTTGACAGGTTACATTTGAGCCTCTGAGCTTGGCACCAGCTGTGATACACATCTGGCAGTTATACCTCTGTGTCTAGTGAAGtgccagcccacaaatacagcATGTCCTCCCAGGAAGAAGATGGGACTGCAGAGCCGGGCCATAACACTGCGGGACCATCCACTTGCTCCTCCACTGAGAATGATGAGACCACTGGAGACATCATCACTGTCACCATTGGAGCAACTGTGCCCACAGGGTTTGAGCACACTGCTGCAGAAGAGGTCAATGAGAAGATTGGGGTTGATGCACGAATCAGCAAAGATCGTGGTCGCATATACTTTCCAATAACCACTGACAAGCTTTTTCAGGTCCATCTTCTGAGGTCTGTGGACAACCTATTTGTTGTGGTTGAGGAATATGATCATTACCAGTTCAAAGAATCAAAGGAGGAGACATTGATGGAGATGCAGCAGCTTGCCTCCAAACTCCCCTGGACTAATGCCTTAGAGGTTTGGAAACTAAATGGCGccctaaaaaagaagaagggcTACCGGAAAGGAGGAAATGGTACCAAAGTAAAACCTAATAGTGAGGCCGCTGATGCAGCCGTTGCTGATACTGAGCAGCAAGAGCTACCGCTGGCGGCGTCTGCTGCTGAAACCCCGACAAAGGCGGAGAGCACAGCTGACACGGAGACCAGCACGCAGGACACCGAGGAGACAGCACCCGAGGCCAAACCCATCAAGTTTCGTGTGACGTGCAACAGGGCTGGTGACAAACACAGCTTTTCCTCTAACGAGGCAGCCAGAGACTTTGGTGGGGCCGTGCAAGAATTCTTCCTGTGGAAAGCAGACATGACAAAGTTTGACATAGAGGTGTTACTAAACATACACAATGAAGAGGTGGTGATCGGCATTGCACTCACAGAAGAGAGTCTTCACAGGAGAAACATCAGTCACTTTGGACCCACTACTCTGCGGTCTACCTTGTGCTATGGCATGCTCAGGCTGTGTAAACCTCAGGCATCCGATATAATACTTGATCCAATGTGCGGGACTGGAGCTATACCATTGGAGGGGGCCATTGAATTTAACAGTTCATTCTACGTTGCCGGTGACAACAATGACATGGCAGTTAACCGCACTGTCAATAATATATGTCACATCCAGAAACGGAGGGCAGTCAAGGGCAGTGCATCTGGATTGCCTATTGACACAGTGCGTTGGGATCTGTGCAATTTACCCATAAGGACCGGCTCTGTTGACATTATCATCACTGACATGCCCTTTGGGAAGAGAATGGGCTCTAGGAAGAAGAACTGGGACCTGTACCCTTCCTGTCTGAGggaaatggcccgtgtgtgcaCACCAGGCTCAGGAAAGGCTGTCTTGTTGACGCAGGACAAGAAATGCTTGGCCAAGGCTATCTCGAGGATGGGAGGGCTGTGGAGGAAGCTGCACACTGTTTGGGTCAACGTTGGGGGTTTACATGCTGGAGTCTACCTCCTCAAGCGAACCGGGGCCGTGTTTGGCCAAACTCCGGAGGATGTCTATGAATCACGAGGGACGGTTAATGCAAAAGGGGATGAGAAGGGTGACAAGGAGCTCTCTTAATTCCCATCCTGCATTTAGGTTCTGAATTTATATTTAAGGCCATTAAGGATTGacattttttatactttttatttttttcagattcTCTGGTCAAGTTTGCCAAGCAtttgtgtgtaattttttgTTTCTCATTTAGTTTAATGTGAAA
>XM_039797181.1
GTCGGAAGCCTCGGTATTGTTGCAGCAGCTGAGTGGAAGCATGTTTCCGCCTCGTGTTTGACAGGTTGGTTACATTTGAGCCTCTGAGCTTGGCACCAGCTGTGATACACATCTGGCAGTTATACCTCTGTGTCTAGTGAAGtgccagcccacaaatacagcATGTCCTCCCAGGAAGAAGATGGGACTGCAGAGCCGGGCCATAACACTGCGGGACCATCCACTTGCTCCTCCACTGAGAATGATGAGACCACTGGAGACATCATCACTGTCACCATTGGAGCAACTGTGCCCACAGGGTTTGAGCACACTGCTGCAGAAGAGGTCAATGAGAAGATTGGGGTTGATGCACGAATCAGCAAAGATCGTGGTCGCATATACTTTCCAATAACCACTGACAAGCTTTTTCAGGTCCATCTTCTGAGGTCTGTGGACAACCTATTTGTTGTGGTTGAGGAATATGATCATTACCAGTTCAAAGAATCAAAGGAGGAGACATTGATGGAGATGCAGCAGCTTGCCTCCAAACTCCCCTGGACTAATGCCTTAGAGGTTTGGAAACTAAATGGCGccctaaaaaagaagaagggcTACCGGAAAGGAGGAAATGGTACCAAAGTAAAACCTAATAGTGAGGCCGCTGATGCAGCCGTTGCTGATACTGAGCAGCAAGAGCTACCGCTGGCGGCGTCTGCTGCTGAAACCCCGACAAAGGCGGAGAGCACAGCTGACACGGAGACCAGCACGCAGGACACCGAGGAGACAGCACCCGAGGCCAAACCCATCAAGTTTCGTGTGACGTGCAACAGGGCTGGTGACAAACACAGCTTTTCCTCTAACGAGGCAGCCAGAGACTTTGGTGGGGCCGTGCAAGAATTCTTCCTGTGGAAAGCAGACATGACAAAGTTTGACATAGAGGTGTTACTAAACATACACAATGAAGAGGTGGTGATCGGCATTGCACTCACAGAAGAGAGTCTTCACAGGAGAAACATCAGTCACTTTGGACCCACTACTCTGCGGTCTACCTTGTGCTATGGCATGCTCAGGCTGTGTAAACCTCAGGCATCCGATATAATACTTGATCCAATGTGCGGGACTGGAGCTATACCATTGGAGGGGGCCATTGAATTTAACAGTTCATTCTACGTTGCCGGTGACAACAATGACATGGCAGTTAACCGCACTGTCAATAATATATGTCACATCCAGAAACGGAGGGCAGTCAAGGGCAGTGCATCTGGATTGCCTATTGACACAGTGCGTTGGGATCTGTGCAATTTACCCATAAGGACCGGCTCTGTTGACATTATCATCACTGACATGCCCTTTGGGAAGAGAATGGGCTCTAGGAAGAAGAACTGGGACCTGTACCCTTCCTGTCTGAGggaaatggcccgtgtgtgcaCACCAGGCTCAGGAAAGGCTGTCTTGTTGACGCAGGACAAGAAATGCTTGGCCAAGGCTATCTCGAGGATGGGAGGGCTGTGGAGGAAGCTGCACACTGTTTGGGTCAACGTTGGGGGTTTACATGCTGGAGTCTACCTCCTCAAGCGAACCGGGGCCGTGTTTGGCCAAACTCCGGAGGATGTCTATGAATCACGAGGGACGGTTAATGCAAAAGGGGATGAGAAGGGTGACAAGGAGCTCTCTTAATTCCCATCCTGCATTTAGGTTCTGAATTTATATTTAAGGCCATTAAGGATTGacattttttatactttttatttttttcagattcTCTGGTCAAGTTTGCCAAGCAtttgtgtgtaattttttgTTTCTCATTTAGTTTAATGTGAAA
>XM_039797183.1
GTCAGTACAGTTAGCAAGTGTAATATAACTCACTCAAACTATTGTCTGTCGTTGCTAAAGATCACATAAACACGTATCGCGATGTGGCAGCGGTTTAATATAAAAGCCGTATCTGTTACATTTGAGCCTCTGAGCTTGGCACCAGCTGTGATACACATCTGGCAGTTATACCTCTGTGTCTAGTGAAGtgccagcccacaaatacagcATGTCCTCCCAGGAAGAAGATGGGACTGCAGAGCCGGGCCATAACACTGCGGGACCATCCACTTGCTCCTCCACTGAGAATGATGAGACCACTGGAGACATCATCACTGTCACCATTGGAGCAACTGTGCCCACAGGGTTTGAGCACACTGCTGCAGAAGAGGTCAATGAGAAGATTGGGGTTGATGCACGAATCAGCAAAGATCGTGGTCGCATATACTTTCCAATAACCACTGACAAGCTTTTTCAGGTCCATCTTCTGAGGTCTGTGGACAACCTATTTGTTGTGGTTGAGGAATATGATCATTACCAGTTCAAAGAATCAAAGGAGGAGACATTGATGGAGATGCAGCAGCTTGCCTCCAAACTCCCCTGGACTAATGCCTTAGAGGTTTGGAAACTAAATGGCGccctaaaaaagaagaagggcTACCGGAAAGGAGGAAATGGTACCAAAGTAAAACCTAATAGTGAGGCCGCTGATGCAGCCGTTGCTGATACTGAGCAGCAAGAGCTACCGCTGGCGGCGTCTGCTGCTGAAACCCCGACAAAGGCGGAGAGCACAGCTGACACGGAGACCAGCACGCAGGACACCGAGGAGACAGCACCCGAGGCCAAACCCATCAAGTTTCGTGTGACGTGCAACAGGGCTGGTGACAAACACAGCTTTTCCTCTAACGAGGCAGCCAGAGACTTTGGTGGGGCCGTGCAAGAATTCTTCCTGTGGAAAGCAGACATGACAAAGTTTGACATAGAGGTGTTACTAAACATACACAATGAAGAGGTGGTGATCGGCATTGCACTCACAGAAGAGAGTCTTCACAGGAGAAACATCAGTCACTTTGGACCCACTACTCTGCGGTCTACCTTGTGCTATGGCATGCTCAGGCTGTGTAAACCTCAGGCATCCGATATAATACTTGATCCAATGTGCGGGACTGGAGCTATACCATTGGAGGGGGCCATTGAATTTAACAGTTCATTCTACGTTGCCGGTGACAACAATGACATGGCAGTTAACCGCACTGTCAATAATATATGTCACATCCAGAAACGGAGGGCAGTCAAGGGCAGTGCATCTGGATTGCCTATTGACACAGTGCGTTGGGATCTGTGCAATTTACCCATAAGGACCGGCTCTGTTGACATTATCATCACTGACATGCCCTTTGGGAAGAGAATGGGCTCTAGGAAGAAGAACTGGGACCTGTACCCTTCCTGTCTGAGggaaatggcccgtgtgtgcaCACCAGGCTCAGGAAAGGCTGTCTTGTTGACGCAGGACAAGAAATGCTTGGCCAAGGCTATCTCGAGGATGGGAGGGCTGTGGAGGAAGCTGCACACTGTTTGGGTCAACGTTGGGGGTTTACATGCTGGAGTCTACCTCCTCAAGCGAACCGGGGCCGTGTTTGGCCAAACTCCGGAGGATGTCTATGAATCACGAGGGACGGTTAATGCAAAAGGGGATGAGAAGGGTGACAAGGAGCTCTCTTAATTCCCATCCTGCATTTAGGTTCTGAATTTATATTTAAGGCCATTAAGGATTGacattttttatactttttatttttttcagattcTCTGGTCAAGTTTGCCAAGCAtttgtgtgtaattttttgTTTCTCATTTAGTTTAATGTGAAA

Function


symbol description
thumpd3 Predicted to enable tRNA (guanine) methyltransferase activity. Predicted to be involved in tRNA methylation. Predicted to act upstream of or within methylation. Is expressed in several structures, including alar plate midbrain region; immature eye; mesoderm; musculature system; and nervous system. Orthologous to human THUMPD3 (THUMP domain containing 3).

NR:

description
THUMP domain-containing protein 3

GO:

id name namespace
GO:0003723 RNA binding molecular_function

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_039797180.1 False 1842 mRNA 0.48 10 16897070 16906824
XM_039797181.1 False 1804 mRNA 0.49 10 16897112 16906824
XM_039797183.1 True 1850 mRNA 0.48 10 16897180 16906824
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Neighbor


gene id symbol gene type direction distance location
cav3 cav3,LOC107093348 coding upstream 155558 16738036 ~ 16741512 (+)
LOC120557897 LOC104966248,LOC103368476,LOC102798401,LOC101469442,LOC105924440,LOC106583184 coding upstream 161764 16733386 ~ 16735306 (+)
gpr61l LOC104930496,LOC103368477,LOC104957521,LOC100694581 coding upstream 167054 16724159 ~ 16730016 (+)
parp3 parp3 coding upstream 174253 16718280 ~ 16722817 (+)
grm2a LOC103368479 coding upstream 180843 16683808 ~ 16716227 (+)
LOC120557149 LOC104950923,LOC103362905 coding downstream 1018 16907842 ~ 16916563 (+)
LOC120557990 LOC103362904,LOC104928138 coding downstream 10997 16917821 ~ 16962625 (+)
wdr77 wdr77,LOC102777617 coding downstream 94350 17001174 ~ 17004437 (+)
LOC120558021 LOC103362897,LOC103385872,LOC104928123,LOC104950934 coding downstream 112126 17018950 ~ 17020740 (+)
irf6 irf6 coding downstream 120885 17027709 ~ 17032694 (+)
G39210 NA non-coding upstream 73814 16818746 ~ 16823256 (+)
G39197 NA non-coding upstream 111019 16785831 ~ 16786051 (+)
G39196 NA non-coding upstream 112005 16784748 ~ 16785065 (+)
G39195 NA non-coding upstream 114452 16782411 ~ 16782618 (+)
G39143 NA non-coding upstream 317348 16579085 ~ 16579722 (+)
G39302 LOC102778475,LOC101478284,LOC100692415 non-coding downstream 141111 17047935 ~ 17048365 (+)
G39304 LOC103362894 non-coding downstream 142973 17049797 ~ 17053951 (+)
G39308 NA non-coding downstream 173842 17080666 ~ 17082576 (+)
G39358 strip1 non-coding downstream 251079 17157903 ~ 17159236 (+)
G39427 celsr2 non-coding downstream 381615 17288439 ~ 17289516 (+)
G39116 NA other upstream 353490 16517536 ~ 16543580 (+)
G39104 LOC103385912,LOC104930488,LOC103358732,LOC101079922 other upstream 461841 16433238 ~ 16435229 (+)
LOC120557902 rab7,rab7a,LOC102230535,LOC106583206,LOC105017191,LOC101061812 other upstream 738708 16149125 ~ 16158362 (+)
eefsec eefsec,LOC102787825 other upstream 836740 16049678 ~ 16060330 (+)
ccdc174 ccdc174 other upstream 922833 15965402 ~ 15974237 (+)
LOC120556687 LOC103362900,LOC104950925,LOC102306361,LOC100693144,LOC103362894 other downstream 57793 16964617 ~ 17046696 (+)
G39351 NA other downstream 205289 17112113 ~ 17119890 (+)
srsf3b srsf3,LOC104948713,LOC103465186,LOC102226051,LOC103150674 other downstream 286327 17193151 ~ 17198217 (+)
LOC120557637 minos1,LOC103357934 other downstream 464659 17371483 ~ 17377560 (+)
G39581 LOC104949003,LOC103357913 other downstream 701106 17607930 ~ 17609216 (+)

Expression


thumpd3(thumpd3,LOC102800238) Expression in all Baseline Samples

Bar chart with 13 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 200.
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thumpd3(thumpd3,LOC102800238) Expression in each Bioproject

Bar chart with 8 bars.
thumpd3(thumpd3,LOC102800238) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400.
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Co-expression Network