Item | Value |
---|---|
gene id | thumpd3 |
gene name | thumpd3,LOC102800238 |
gene type | coding |
species | eurasian perch (Perca fluviatilis) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_053115.1 |
NCBI id | CM020912.1 |
chromosome length | 44863486 |
location | 16897070 ~ 16906824 (+) |
genome version | GENO_Pfluv_1.0_2020_eurasian_perch_Genome |
symbol | description |
---|---|
thumpd3 | Predicted to enable tRNA (guanine) methyltransferase activity. Predicted to be involved in tRNA methylation. Predicted to act upstream of or within methylation. Is expressed in several structures, including alar plate midbrain region; immature eye; mesoderm; musculature system; and nervous system. Orthologous to human THUMPD3 (THUMP domain containing 3). |
description |
---|
THUMP domain-containing protein 3 |
id | name | namespace |
---|---|---|
GO:0003723 | RNA binding | molecular_function |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_039797180.1 | False | 1842 | mRNA | 0.48 | 10 | 16897070 | 16906824 |
XM_039797181.1 | False | 1804 | mRNA | 0.49 | 10 | 16897112 | 16906824 |
XM_039797183.1 | True | 1850 | mRNA | 0.48 | 10 | 16897180 | 16906824 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
cav3 | cav3,LOC107093348 | coding | upstream | 155558 | 16738036 ~ 16741512 (+) |
LOC120557897 | LOC104966248,LOC103368476,LOC102798401,LOC101469442,LOC105924440,LOC106583184 | coding | upstream | 161764 | 16733386 ~ 16735306 (+) |
gpr61l | LOC104930496,LOC103368477,LOC104957521,LOC100694581 | coding | upstream | 167054 | 16724159 ~ 16730016 (+) |
parp3 | parp3 | coding | upstream | 174253 | 16718280 ~ 16722817 (+) |
grm2a | LOC103368479 | coding | upstream | 180843 | 16683808 ~ 16716227 (+) |
LOC120557149 | LOC104950923,LOC103362905 | coding | downstream | 1018 | 16907842 ~ 16916563 (+) |
LOC120557990 | LOC103362904,LOC104928138 | coding | downstream | 10997 | 16917821 ~ 16962625 (+) |
wdr77 | wdr77,LOC102777617 | coding | downstream | 94350 | 17001174 ~ 17004437 (+) |
LOC120558021 | LOC103362897,LOC103385872,LOC104928123,LOC104950934 | coding | downstream | 112126 | 17018950 ~ 17020740 (+) |
irf6 | irf6 | coding | downstream | 120885 | 17027709 ~ 17032694 (+) |
G39210 | NA | non-coding | upstream | 73814 | 16818746 ~ 16823256 (+) |
G39197 | NA | non-coding | upstream | 111019 | 16785831 ~ 16786051 (+) |
G39196 | NA | non-coding | upstream | 112005 | 16784748 ~ 16785065 (+) |
G39195 | NA | non-coding | upstream | 114452 | 16782411 ~ 16782618 (+) |
G39143 | NA | non-coding | upstream | 317348 | 16579085 ~ 16579722 (+) |
G39302 | LOC102778475,LOC101478284,LOC100692415 | non-coding | downstream | 141111 | 17047935 ~ 17048365 (+) |
G39304 | LOC103362894 | non-coding | downstream | 142973 | 17049797 ~ 17053951 (+) |
G39308 | NA | non-coding | downstream | 173842 | 17080666 ~ 17082576 (+) |
G39358 | strip1 | non-coding | downstream | 251079 | 17157903 ~ 17159236 (+) |
G39427 | celsr2 | non-coding | downstream | 381615 | 17288439 ~ 17289516 (+) |
G39116 | NA | other | upstream | 353490 | 16517536 ~ 16543580 (+) |
G39104 | LOC103385912,LOC104930488,LOC103358732,LOC101079922 | other | upstream | 461841 | 16433238 ~ 16435229 (+) |
LOC120557902 | rab7,rab7a,LOC102230535,LOC106583206,LOC105017191,LOC101061812 | other | upstream | 738708 | 16149125 ~ 16158362 (+) |
eefsec | eefsec,LOC102787825 | other | upstream | 836740 | 16049678 ~ 16060330 (+) |
ccdc174 | ccdc174 | other | upstream | 922833 | 15965402 ~ 15974237 (+) |
LOC120556687 | LOC103362900,LOC104950925,LOC102306361,LOC100693144,LOC103362894 | other | downstream | 57793 | 16964617 ~ 17046696 (+) |
G39351 | NA | other | downstream | 205289 | 17112113 ~ 17119890 (+) |
srsf3b | srsf3,LOC104948713,LOC103465186,LOC102226051,LOC103150674 | other | downstream | 286327 | 17193151 ~ 17198217 (+) |
LOC120557637 | minos1,LOC103357934 | other | downstream | 464659 | 17371483 ~ 17377560 (+) |
G39581 | LOC104949003,LOC103357913 | other | downstream | 701106 | 17607930 ~ 17609216 (+) |