LOC120557149 (LOC104950923,LOC103362905)


Basic Information

Item Value
gene id LOC120557149
gene name LOC104950923,LOC103362905
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 16907842 ~ 16916563 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039797184.1
GACGTCATCGTCACAGATTTAGCAATGAGCAGCGCAGATGACAGTGACGTGCCTGTGAGTTCATAAAAAGCCATGAGAGCTGAAGGGACTCCATTGACTCTGCGCAGCGGGAAAGTAAACACACGAGATGATCTGGACCATTTTTCTGCTTGCCCAAGCTGTCCTGCTTTATTTGATCCTCACAAACAGATCGAGatccaAGAGCGATCCACCTCTAGACAAAGGCGTAATACCATGGTTAGGCCATGCGCTTGAATTTGGAAAAGATGCATCCAAGTTCTTGAATCGAATGAAGCAGAAACATGGCGACATTTTCACAGTGCGTGTCGCTGGACGTTACGTGACCGTGCTGCTGGATCCGCACTCATACGACACGGTCATCAATGACTCGGACTCCCTGGACTTCACTCGCTATGCACAGGTCCTCATGGAACGGATTTTTAACCTGCGGCTCCCGCATCACCAGCCAGCTAAAGCAAAAGCAATGACCAAAAGGCACTTCATAGGAATGGATTTGTCCGCCCTGAACAGCACCATGAGCAGACACCTGCAGGCGTCACTGAAAGCTGAGATGCCTCAGAACCAGAAAGACTGGAAAGAGGAGGGACTGTTCAACCTCTCCTACAGCTTACTCTTCAAGGCGGGGTATCTGACGCTGTTCGGAGGAgaacagaacaacaacagcgCAGATCCCTCAAGCATCTATGAGGAGTACAAGAAGTTTGATGGTCTCTTGACCAAAATGGCGAGAGGCACACTAAAGCCAGAGGAGAAGAGGACAGTCCAGAGTGTTCGGCAGAAACTGTGGGAGCTTCTGGCTCCAGCAGGTCTGACTGAGGACTCGGGGTCGAGCCCTTGGCTCCACGCCTACAGGCGGCTCCTGCAGGAGGAGGGGGCCGATGAAGAGTCGCAGAAGAAAGCTGTACTGATGCAACTCTGGGCCACACAGggTAATGTTGGTCCTGCTGCTTTCTGGCTGTTGGGCTACTTATTGACAAATCCTGAAGCTCTGACAGCAGTGAAGAGGGAGTTAAGCGGGATCTCCCAGATGGAAACCTCAGAGACCTCATTACTGGACAGAGCTGTGAACACCCCCGTGTTTGATAGCGTCTTAGAAGAGACACTTAGACTCACTGCTGCCCCCTTCATCACCAGAGAGGTTGTGCAGGAAAAGACCCTCCACATGGCTGATGGCCAAGAGTACATGCTAAGAAAGGGAGACAGGGTGTGTTTGTTCCCCTTTAACAGCCCTCAAATGGACCCTGAGATTCACCACGAGCCACAGaaATACAAGTACGACCGCTTCCTGAATGAAGATGGATCAGTGAAGAGAGATTTTTATAAAGGAGGGAGGCGGCTGAAATATTACACCATGCCATGGGGCGCAGGGACCAATGGCTGTGTGGGAAAAGAATTTGCCATCAATACCATCAGAAAGTTTGTTTACATAGTGTTGACCAACTATGATTTGGAGCTGTGTGACCCAAATGCTCAGATGCCGGAGGTAAATGCCAGTCGTTATGGATTTGGAATGCTACAGCCAGAGGGAGACCTGCTTGTCCGATACAAACCTAGGAATACACACTAGGACTTCAAAAACAAGCACATATTTTATATGCGCATTTCAACACATGCACATTGTTTATAGTGTTAATATgctctttttacttttatactccatatttata

Function

NR:

description
PREDICTED: prostacyclin synthase-like

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K01831 PTGIS, CYP8A; prostacyclin synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039797184.1 True 1688 mRNA 0.49 10 16907842 16916563

Neighbor

gene id symbol gene type direction distance location
thumpd3 thumpd3,LOC102800238 coding upstream 1018 16897070 ~ 16906824 (+)
cav3 cav3,LOC107093348 coding upstream 166330 16738036 ~ 16741512 (+)
LOC120557897 LOC104966248,LOC103368476,LOC102798401,LOC101469442,LOC105924440,LOC106583184 coding upstream 172536 16733386 ~ 16735306 (+)
gpr61l LOC104930496,LOC103368477,LOC104957521,LOC100694581 coding upstream 177826 16724159 ~ 16730016 (+)
parp3 parp3 coding upstream 185025 16718280 ~ 16722817 (+)
LOC120557990 LOC103362904,LOC104928138 coding downstream 1258 16917821 ~ 16962625 (+)
wdr77 wdr77,LOC102777617 coding downstream 84611 17001174 ~ 17004437 (+)
LOC120558021 LOC103362897,LOC103385872,LOC104928123,LOC104950934 coding downstream 102387 17018950 ~ 17020740 (+)
irf6 irf6 coding downstream 111146 17027709 ~ 17032694 (+)
eps8l3a NA coding downstream 118156 17034719 ~ 17042813 (+)
G39210 NA non-coding upstream 84586 16818746 ~ 16823256 (+)
G39197 NA non-coding upstream 121791 16785831 ~ 16786051 (+)
G39196 NA non-coding upstream 122777 16784748 ~ 16785065 (+)
G39195 NA non-coding upstream 125224 16782411 ~ 16782618 (+)
G39143 NA non-coding upstream 328120 16579085 ~ 16579722 (+)
G39302 LOC102778475,LOC101478284,LOC100692415 non-coding downstream 131372 17047935 ~ 17048365 (+)
G39304 LOC103362894 non-coding downstream 133234 17049797 ~ 17053951 (+)
G39308 NA non-coding downstream 164103 17080666 ~ 17082576 (+)
G39358 strip1 non-coding downstream 241340 17157903 ~ 17159236 (+)
G39427 celsr2 non-coding downstream 371876 17288439 ~ 17289516 (+)
G39116 NA other upstream 364262 16517536 ~ 16543580 (+)
G39104 LOC103385912,LOC104930488,LOC103358732,LOC101079922 other upstream 472613 16433238 ~ 16435229 (+)
LOC120557902 rab7,rab7a,LOC102230535,LOC106583206,LOC105017191,LOC101061812 other upstream 749480 16149125 ~ 16158362 (+)
eefsec eefsec,LOC102787825 other upstream 847512 16049678 ~ 16060330 (+)
ccdc174 ccdc174 other upstream 933605 15965402 ~ 15974237 (+)
LOC120556687 LOC103362900,LOC104950925,LOC102306361,LOC100693144,LOC103362894 other downstream 48054 16964617 ~ 17046696 (+)
G39351 NA other downstream 195550 17112113 ~ 17119890 (+)
srsf3b srsf3,LOC104948713,LOC103465186,LOC102226051,LOC103150674 other downstream 276588 17193151 ~ 17198217 (+)
LOC120557637 minos1,LOC103357934 other downstream 454920 17371483 ~ 17377560 (+)
G39581 LOC104949003,LOC103357913 other downstream 691367 17607930 ~ 17609216 (+)

Expression


Co-expression Network