XLOC_005098 (ppp4cb)


Basic Information

Item Value
gene id XLOC_005098
gene name ppp4cb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 3964351 ~ 3978342 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009900
GGGAGGCGCTTGACGCCGGTAGAGGGTGGTGGGAGAAAAAGACCGACGAAACCGGGTGAAGCTCTGAAAAGAGAGCTGACGTTATAGTCTTTACATCGCTATATTTCGCAAAGCTCTGCCTGGAGTGGTTAAAGGTTGTCGTGCCCGGACTCCTCCCGCCACCTCTCCGCATCTCtggtgtgagtgtgtctgtgtttggTCTGCACAGAGAGAGATTGTTAGCACCACAGTCGCTGTATTGACTGTTTTGTGAGGGGAAAACAGGCAGACGGGCTCTCAGCGATCCGCCATGGGTGACATGAGTGATCTGGACCGACAGATCGACCAGCTGAGGAGGTGTGAGCTCATCAAGGAGAATGAGGTCAAAGCCCTGTGTGCCAAAGCCAGAGAGATTCTTGTAGAAGAGAGTAATGTACAGAGGGTGGACTCTCCTGTCACGGTGTGTGGTGACATCCACGGGCAGTTTTATGACCTGAAGGAATTGTTTAGGGTGGGAGGCGACGTTCCAGAAACAAACTACCTCTTTATGGGAGACTTTGTGGACAGAGGCTTTTACAGTGTTGAGACCTTTCTGTTACTTCTCGCCCTCAAGGTGCGTTATCCAGACAGAATCACCCTGATCCGGGGAAATCACGAGTCTAGACAGATCACACAGGTGTACGGCTTTTATGACGAGTGTTTAAGAAAATACGGCTCGGTTACAGTATGGAGGTACTGCACGGAGATCTTCGACTACCTGTCTCTATCCGCCATCATTGACGGCAAAATCTTCTGTGTACATGGAGGCCTGTCGCCTTCCATCCAGACTCTGGACCAGATCAGAACCATCGACAGAAAGCAGGAAGTGCCTCACGATGGACCCATGTGTGATCTTTTGTGGTCTGATCCTGAAGACACCACAGGCTGGGGCGTGAGTCCGAGAGGTGCTGGCTATCTGTTTGGCAGTGATGTTGTGGCTCAGTTTAACGCCGCCAACGACATCGATATGATATGCAGAGCACACCAGCTCGTCATGGAGGGTTACAAGTGGCATTTCAACGAGACCGTTCTCACTGTGTGGTCTGCGCCCAACTACTGCTACAGATGTGGGAACGTGGCAGCGATCCTCGAGCTGGACGAGCATCTGCAGAAAGAGTTCATCATTTTCGAAGCCGCTCCGCAAGAAACCAGAGGCATTCCCTCCAAAAAGCCAGTCGCTGACTACTTCCTGTGAGCTTCCCGGATGCCAGCACTCTCAACAGGAAGTGGTGCCCTGTGTGTACTTGTATTTCTGTTTCCCCTTTCCCTGCCCAACTGTCTTAattgtgctttttttattattattattcttacttTCTCTGTAatattcagtttttgttttctactTTCCATCCACTTTCACATTCTTTCACTGGGCCATCAAGACACACATTGGCATTATGTTCCGCTGTGAATTCTCTCAATCTCAGACTCACGGTATGCTGTAGATGTAGACCTTTATTATGTATGTGAATAGCGGTAGGGAGAGAGGAAGAGCTTCTGGGGAAGAGCTGGTTTCACGTGTTCCTCAGAAAAAGCTGTATTTGTCCAAGCGGGAGGTCAAAACTGGTTGATGgagacttttttttgttgtttcttcaACTCCTTTCTTCTTATTCTCTTTTCATGCAAGTTTTGAATCTGTTAGAGAATGGGTTTGACACGACCCTGCTTTGATTACATTTACAGTCATCGGCTTTCAGCAGAGTCCTTATAGTTTCAGATttccccgttttttttttttttttgtttgttttttgttttttgcgaaGGAAATGACTGCAGATTCTGTGGTCATATGTATATGGACATTAACTACACTGGAAAACAttaaccatacacacacacacagaactggAGTTAGAAATGTGCTTTTCCCTCTTGACTGTTCTCTCTATAGGACTTATTGTTgattcttatttttaatttgtgaaaataaaatgtacttttgtATAAATTTA
>TCONS_00009901
AAAAGACCGACGAAACCGGGTGAAGCTCTGAAAAGAGAGCTGACGTTATAGTCTTTACATCGCTATATTTCGCAAAGCTCTGCCTGGAGTGGTTAAAGGTTGTCGTGCCCGGACTCCTCCCGCCACCTCTCCGCATCTCtggtgtgagtgtgtctgtgtttggTCTGCACAGAGAGAGATTGTTAGCACCACAGTCGCTGTATTGACTGTTTTGTGAGGGGAAAACAGGCAGACGGGCTCTCAGCGATCCGCCATGGGTGACATGAGTGATCTGGACCGACAGATCGACCAGCTGAGGAGGTGTGAGCTCATCAAGGAGAATGAGGTCAAAGCCCTGTGTGCCAAAGCCAGAGAGATTCTTGTAGAAGAGAGTAATGTACAGAGGGTGGACTCTCCTGTCACGGTGTGTGGTGACATCCACGGGCAGTTTTATGACCTGAAGGAATTGTTTAGGGTGGGAGGCGACGTTCCAGAAACAAACTACCTCTTTATGGGAGACTTTGTGGACAGAGGCTTTTACAGTGTTGAGACCTTTCTGTTACTTCTCGCCCTCAAGATCTTCTGTGTACATGGAGGCCTGTCGCCTTCCATCCAGACTCTGGACCAGATCAGAACCATCGACAGAAAGCAGGAAGTGCCTCACGATGGACCCATGTGTGATCTT

Function

symbol description
ppp4cb Predicted to enable metal ion binding activity; protein serine phosphatase activity; and protein threonine phosphatase activity. Acts upstream of or within determination of ventral identity and positive regulation of BMP signaling pathway. Predicted to be located in cytoplasm and microtubule organizing center. Is expressed in blastoderm; fertilized egg; and head. Orthologous to human PPP4C (protein phosphatase 4 catalytic subunit).

GO:

id name namespace
GO:0048264 determination of ventral identity biological_process
GO:0030513 positive regulation of BMP signaling pathway biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0005815 microtubule organizing center cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0004721 phosphoprotein phosphatase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080219-32 Predicted to enable metal ion binding activity; protein serine phosphatase activity; and protein threonine phosphatase activity. Acts upstream of or within determination of ventral identity and positive regulation of BMP signaling pathway. Predicted to be located in cytoplasm and microtubule organizing center. Is expressed in blastoderm; fertilized egg; and head. Orthologous to human PPP4C (protein phosphatase 4 catalytic subunit).

Ensembl:

ensembl_id ENSDARG00000076439

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009900 False 1979 mRNA 0.46 9 3964351 3978342
TCONS_00009901 True 664 mRNA 0.51 6 3969503 3978306

Neighbor

gene id symbol gene type direction distance location
XLOC_005097 eif3c coding downstream 1979 3944229 ~ 3962372 (-)
XLOC_005096 zgc:92040 coding downstream 23583 3926168 ~ 3940768 (-)
XLOC_005095 gdpd3b coding downstream 60340 3893032 ~ 3904011 (-)
XLOC_005094 NA coding downstream 99117 3860464 ~ 3865234 (-)
XLOC_005093 taok2b coding downstream 123687 3789114 ~ 3840664 (-)
XLOC_005099 si:ch211-136m16.8 coding upstream 3004 3981346 ~ 3992839 (-)
XLOC_005100 si:ch211-180a12.2 coding upstream 20422 3998764 ~ 4028079 (-)
XLOC_005101 aldoab coding upstream 73838 4052180 ~ 4070058 (-)
XLOC_005102 NA coding upstream 111395 4089737 ~ 4129820 (-)
XLOC_005103 NA coding upstream 165252 4143594 ~ 4169699 (-)
XLOC_005092 NA non-coding downstream 177969 3782621 ~ 3786382 (-)
XLOC_005087 NA non-coding downstream 394270 3569747 ~ 3570081 (-)
XLOC_005086 NA non-coding downstream 420335 3519168 ~ 3544016 (-)
XLOC_005083 NA non-coding downstream 679442 3281756 ~ 3284909 (-)
XLOC_005105 NA non-coding upstream 211680 4190022 ~ 4194304 (-)
XLOC_005109 NA non-coding upstream 253515 4231857 ~ 4232505 (-)
XLOC_005111 NA non-coding upstream 296568 4274910 ~ 4287034 (-)

Expression


Co-expression Network