psma5 (psma5)


Basic Information

Item Value
gene id psma5
gene name psma5
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 13341900 ~ 13347042 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039797210.1
AATACTTAGAGACAGCTCTGCACATACGGAACCTTCGTTTCCGATTTGTTGACAACCGGCCCGTTTGGATGTTACACCTCAGACGCTTCCCCTGAAACAAGCGAACTCATTCAAGGGTTTGTAGCTCGAGGTGCTGTGTTAAACGTTAAAAGATGTTTTTGACAAGATCGGAATATgacagAGGTGTGAACACATTCTCTCCTGAAGGAAGATTGTTCCAGGTTGAATATGCCATAGAGGCCATTAAATTGGGCTCCACAGCCATCGGTATCCAGACGTCAGAGGGAGTGTGTCTGGCTGTGGAGAAAAGGATCACCTCTCCACTGATGGAGCCCAACAGCATTGAAAAGATTGTGGAGATTGACAGTCACATTGGTTGCGCCATGAGTGGCTTGATAGCTGATGCCAAGACTCTAATCGACAAAGCAAGAGTGGAAACACAGAACCACTGGTTCACTTACAATGAGACAATGACAGTGGAGAGTGTGACTCAGGCTGTGTCCAACCTGGCGCTGCAGTTTGGAGAGGAGGACGCTGATCCCGGTGCCATGAGTCGACCATTCGGCGTAGCACTTCTGTTCGGGGGAGTTGATGAAAAAGGACCCCAGCTGTACCACATGGACCCATCAGGAACCTTTGTGCAGTGTGACGCTCGGGCCATCGGCTCAGCGTCTGAGGGAGCACAGAGCTCTCTGCAAGAGGTCTACCACAAGTCCATGACATTAAAAGAAGCCATCAAGTCATCTCTCACCATTCTGAAGCAGGTGATGGAGGAGAAGCTCAACTCTACCAACATTGAGCTGGCAACGGTAGAGCCCGGGAAGACCTTCCACATGTATTCCAAAGAGGAGCTGGAGGATGTAATCAAGGATATCTAAAGCAGATAAGACTTGAAAGTCTTGGTTTGAGTTCTGTGCAGGACAGGAGAGGACATGGAAGTACACCTGGGCTAAATGTCACAACACAACCACAACTTGGCATCAGCACATTTTCCTTGCTGCATTCAGATTTTCTATTGGATTGCATAAGAGGCTTCTCTTTTTAGTGTGCTAATTTACTTGTCTCTCAGTATCTGTACAGCAGTCTGTCCAGCACTTAAAACTGAGTGGCAAGAAAACAGTTGGG

Function

symbol description
psma5 Predicted to be involved in proteasomal protein catabolic process. Predicted to act upstream of or within proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be located in cytoplasm. Predicted to be part of proteasome core complex, alpha-subunit complex. Predicted to be active in nucleus. Orthologous to human PSMA5 (proteasome 20S subunit alpha 5).

NR:

description
Proteasome subunit alpha type-5

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0019773 proteasome core complex, alpha-subunit complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004298 threonine-type endopeptidase activity molecular_function

KEGG:

id description
K02729 PSMA5; 20S proteasome subunit alpha 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039797210.1 True 1125 mRNA 0.48 10 13341900 13347042

Neighbor

gene id symbol gene type direction distance location
trnar-acg_15 NA coding upstream 55589 13286239 ~ 13286311 (+)
camk1b NA coding upstream 77560 13219343 ~ 13264340 (+)
gnl3 NA coding upstream 146999 13171393 ~ 13194901 (+)
LOC120558251 NA coding upstream 148580 13193247 ~ 13193320 (+)
LOC120558254 NA coding upstream 149989 13191778 ~ 13191911 (+)
LOC120557160 sort1 coding downstream 6026 13353068 ~ 13364340 (+)
myog myog coding downstream 33078 13380120 ~ 13382642 (+)
tmem183a tmem183a,LOC102794008 coding downstream 99249 13446291 ~ 13456049 (+)
srgap2 srgap2 coding downstream 510719 13857761 ~ 13919015 (+)
ikbke ikbke coding downstream 573471 13920513 ~ 13941299 (+)
G38001 NA non-coding upstream 225328 13115654 ~ 13116572 (+)
LOC120556864 NA non-coding upstream 262013 13075419 ~ 13079887 (+)
G37980 NA non-coding upstream 269075 13071974 ~ 13072825 (+)
G37978 NA non-coding upstream 270030 13070171 ~ 13071870 (+)
G37970 NA non-coding upstream 277534 13063334 ~ 13064366 (+)
LOC120556887 NA non-coding downstream 428739 13775781 ~ 13777150 (+)
G38156 NA non-coding downstream 564287 13911329 ~ 13989841 (+)
G38163 NA non-coding downstream 644867 13991909 ~ 13992179 (+)
G38164 NA non-coding downstream 655920 14002962 ~ 14003187 (+)
G38206 NA non-coding downstream 698315 14045357 ~ 14045559 (+)
per3 per3 other upstream 12568 13305415 ~ 13329332 (+)
vamp3 vamp3 other upstream 38285 13296376 ~ 13303615 (+)
spcs1 spcs1 other upstream 133642 13205469 ~ 13208258 (+)
kif21b kif21b other upstream 433965 12825516 ~ 12907935 (+)
tmem167b tmem167b other upstream 589615 12749208 ~ 12752285 (+)
tfeb tfeb other downstream 109887 13456929 ~ 13528319 (+)
LOC120557956 nrn1,LOC104931831,LOC102785075,LOC100692329,LOC102195708,LOC102307414 other downstream 880055 14227097 ~ 14233537 (+)
LOC120557952 mettl21b other downstream 988118 14335160 ~ 14337760 (+)
cdk4 LOC107684003,LOC107701179 other downstream 1393567 14740609 ~ 14757359 (+)
znf740a LOC107385642,LOC101469799,LOC102214350,LOC102304359,LOC103376569,LOC107082105,LOC100709046 other downstream 1418255 14765297 ~ 14857069 (+)

Expression


Co-expression Network