rae1 (rae1)


Basic Information

Item Value
gene id rae1
gene name rae1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 8191703 ~ 8200687 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039797253.1
ATAGGAACTAGCGCCACATTTTCGATGCGCCAAAttatttgggcattttcagccttacGGTTTATAGCCATAATTTGACATATTTGGGGAATAACGTTAATGTACTATGAGTTTATTTGGGACAACCTCCGGATTTGGAGCAGGAGGGACCGGTGTCTTTGGAAACGCAACAACAGACAGCCATAACCCCATGAAGGATGTTGAAGTGACTTCACCTCCAGATGACAGCATCAGCTGTCTGGCTTTCAGTCCCCCCACCATGCCAGGAAACTTCCTCATTGGAGGATCCTGGGCCAACGATGTCCGGTGCTGGGAGGTTCAGGACAATGGACAGACTGTCCCCAAAGCCCAACAGATGCACACAGGTCCCGTGCTGGATGCATGCTGGAGCGATGATGGGAGTAAAGTCTTCACTGCTTCTTGTGATAAAACAGCCAAGATGTGGGATCTTAACAGCAATCAGGCATTGCAGATTGCACAGCATGACGGTCCGATCAAATCAATCCACTGGATAAAAGCCCCGAACTACAGCTGCATAATGACTGGCAGTTGGGACAAAACACTGAAGTTCTGGGACACTCGCTCTCCCAATCCCATGATGTCTCTGCAGATGCCAGAGAGATGCTATTGTGCAGATGTTGTGTACCCCATGGCAGTGGTTGCCACAGCTGAGAGAGGCCTAATAGTGTACCAGCTGGAGAACCAGCCCTCTGAATTTCGGAGAATAGACTCTCCTCTCAAACATCAGCACCGCTGTGTTGCCATATTCAAGGACAAGCAGAACAAGCCCACTGGCTTTGCACTGGGAAGCATCGAAGGCCGAGTGGCCATCCACTATATCAACCCTCCAAACCCAGCCAAAGACAACTTCACCTTTAAGTGCCACAGGTCGAATGGAACCAACACAACCACTCCACAGGACATCTATGCTGTGAATGCCATCTCCTTCCATCCTGTCCATGGCACACTGGCTACTGTGGGCTCAGATGGGCGCTTCAGCTTCTGGGACAAAGACGCCCGCACCAAGTTGAAGACCTCAGAGCAGCTCGACCAGCCCATTACGGCTTGCTGCTTCAACCACAATGGCAACATCTTTGCGTATGCTTCCAGTTACGACTGGTCGAAGGGTCATGAGTACTACAACCCCCAGAAAAAGAACTACATCTTCCTAAGGAATGCTGCCGAGGAGCTGAAGCCTCGGAACAAGAAATGGTGA
>XM_039797255.1
ATAGGAACTAGCGCCACATTTTCGATGCGCCAAAttatttgggcattttcagccttacGGTTTATAGCCATAATTTGACATATTTGGGGAATAACGTTAATGTACTATGAGTTTATTTGGGACAACCTCCGGATTTGGAGCAGGAGGGACCGGTGTCTTTGGAAACGCAACAACAGACAGCCATAACCCCATGAAGGATGTTGAAGTGACTTCACCTCCAGATGACAGCATCAGCTGTCTGGCTTTCAGTCCCCCCACCATGCCAGGAAACTTCCTCATTGGAGGATCCTGGGCCAACGATGTCCGGTGCTGGGAGGTTCAGGACAATGGACAGACTGTCCCCAAAGCCCAACAGATGCACACAGGTCCCGTGCTGGATGCATGCTGGAGCGATGATGGGAGTAAAGTCTTCACTGCTTCTTGTGATAAAACAGCCAAGATGTGGGATCTTAACAGCAATCAGGCATTGCAGATTGCACAGCATGACGGTCCGATCAAATCAATCCACTGGATAAAAGCCCCGAACTACAGCTGCATAATGACTGGCAGTTGGGACAAAACACTGAAGTTCTGGGACACTCGCTCTCCCAATCCCATGATGTCTCTGCAGATGCCAGAGAGATGCTATTGTGCAGATGTTGTGTACCCCATGGCAGTGGTTGCCACAGCTGAGAGAGGCCTAATAGTGTACCAGCTGGAGAACCAGCCCTCTGAATTTCGGAGAATAGACTCTCCTCTCAAACATCAGCACCGCTGTGTTGCCATATTCAAGGACAAGCAGAACAAGCCCACTGGCTTTGCACTGGGAAGCATCGAAGGCCGAGTGGCCATCCACTATATCAACCCTCCAAACCCAGCCAAAGACAACTTCACCTTTAAGTGCCACAGGTCGAATGGAACCAACACAACCACTCCACAGGACATCTATGCTGTGAATGCCATCTCCTTCCATCCTGTCCATGGCACACTGGCTACTGTGGGCTCAGATGGGCGCTTCAGCTTCTGGGACAAAGACGCCCGCACCAAGTTGAAGACCTCAGAGCAGCTCGACCAGCCCATTACGGCTTGCTGCTTCAACCACAATGGCAACATCTTTGCGTATGCTTCCAGTTACGACTGGTCGAAGGGTCATGAGTACTACAACCCCCAGAAAAAGAACTACATCTTCCTAAGGAATGCTGCCGAGGAGCTGAAGCCTCGGAACAAGAAATGATTCGTCGTGCCAAGTTGCATCTCTTGTGGGGAAATGCGGAAGACCTGCtgctttagtgtgtgtgtgtgtatacgctCGAGACTGACATCTTCCTTTCGGCAAACACCTGGACCAATGCCGTGGTGCTGCATACTGTGCATGGACCAATCAGAGGGGCCTACCCAACCTGGAGTTGGTGACAGCTGTGTGACAATTGGTCTTAGAGGTCATCATAAAAGGGGAGGGCTTTATTTGTCATTCATCTTGatgtttcgtttttttttttttgtccagctCCATTTTACAGCTTTCCAAAGACTTTTCATTCTCTTTTGATTTGCTGTTACTCAGTGGTTTAGCTCCATGAATGAAATTgggatgtaaaataaataactaactGCATACTATTATATTTTGAACATGTTTATTCCAACCTAAAGGGGGAAGGTTAAAATGAACCTATTGTGTTTGctgtttaaatgtttgttgGGGATTCACGGAACTGTACTGTGCATGAAACCATGAACCACTGTCGTGTTTCAGCTGTAAATCTCTTCATCGTGTGGATCAACACATCATCAAAACGATAAACCTTGGACATCTGTATCTCA

Function

symbol description
rae1 Predicted to enable RNA binding activity and ubiquitin binding activity. Predicted to be involved in RNA export from nucleus; regulation of mitotic spindle organization; and transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery. Predicted to act upstream of or within cell division and mRNA export from nucleus. Predicted to be located in mitotic spindle pole. Predicted to be part of nuclear pore. Orthologous to human RAE1 (ribonucleic acid export 1).

NR:

description
PREDICTED: mRNA export factor isoform X2

GO: NA

KEGG:

id description
K14298 RAE1, GLE2; mRNA export factor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039797253.1 False 1216 mRNA 0.50 12 8191703 8199495
XM_039797255.1 True 1803 mRNA 0.47 13 8191703 8200687

Neighbor

gene id symbol gene type direction distance location
LOC120556871 NA coding upstream 14655 8170682 ~ 8177048 (+)
LOC120557574 LOC104939084,LOC103365882 coding upstream 48756 8140234 ~ 8142947 (+)
cdh4 LOC102194679,LOC102298797,LOC100702438 coding upstream 75672 7885752 ~ 8116031 (+)
LOC120557341 LOC106565946 coding upstream 421961 7762888 ~ 7769742 (+)
LOC120557338 NA coding upstream 440583 7728149 ~ 7751120 (+)
LOC120557172 rbm38,LOC104939027,LOC101475440,LOC103365886,LOC107102025,LOC107384941 coding downstream 1593 8202280 ~ 8212838 (+)
arpc4l arpc4,LOC103358720 coding downstream 32395 8233082 ~ 8236649 (+)
si:dkey-202e22.2 LOC104952071,LOC103375511 coding downstream 128628 8329315 ~ 8334854 (+)
hmces hmces coding downstream 250014 8450701 ~ 8453316 (+)
rpn1 rpn1,LOC107091506 coding downstream 265913 8466600 ~ 8474022 (+)
G36728 NA non-coding upstream 43474 8147927 ~ 8148229 (+)
G36727 NA non-coding upstream 45440 8144541 ~ 8146263 (+)
G36649 LOC104950789,LOC103358841 non-coding upstream 439066 7699642 ~ 7752637 (+)
G36638 NA non-coding upstream 527829 7662944 ~ 7663874 (+)
G36616 LOC103386327,LOC105417874 non-coding upstream 644668 7543986 ~ 7547035 (+)
G36745 NA non-coding downstream 23571 8224258 ~ 8224772 (+)
G36754 NA non-coding downstream 38776 8239463 ~ 8244446 (+)
G36820 NA non-coding downstream 204557 8405244 ~ 8407693 (+)
G36826 LOC100705312 non-coding downstream 217617 8418304 ~ 8419581 (+)
G36827 LOC100705312,LOC102203484,LOC101465335,LOC104933013 non-coding downstream 221486 8422173 ~ 8425531 (+)
hcfc1a hcfc1,LOC102799381,LOC102206223 other upstream 885360 7288907 ~ 7306343 (+)
G36458 LOC100304472,LOC107385856 other upstream 919335 7209996 ~ 7272368 (+)
si:dkey-245f22.3 NA other upstream 1004489 7183199 ~ 7187214 (+)
setmar LOC100698471 other upstream 1553180 6635280 ~ 6638523 (+)
foxp1b foxp1 other upstream 1885560 6139463 ~ 6306143 (+)
G36744 NA other downstream 27075 8227762 ~ 8228720 (+)
prickle2b prickle2 other downstream 1559546 9760233 ~ 9856656 (+)
G37197 NA other downstream 2104500 10305187 ~ 10309996 (+)
glrx glrx other downstream 2187221 10387908 ~ 10396187 (+)
G37397 LOC102299939,LOC103353648,LOC103366902,LOC102208776,LOC100700987,LOC104921056 other downstream 2796543 10997230 ~ 11012909 (+)

Expression


Co-expression Network