LOC120557195 (rassf5,LOC104925239)


Basic Information

Item Value
gene id LOC120557195
gene name rassf5,LOC104925239
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 13964299 ~ 13976366 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039797307.1
gagagagagagggtggagagagaagggggagggtGCTTGCAGGCTGATAACACACTCAACCACAGATGGTTGCAAGAGAGTGAGGgagcaaagacagacagaaagagagagattaagAAGAGGTAGGGAAAGCAGAGACTAAGAAAGCGGGTGAGGCTGAGTGGGAGGCATCCATCTCTCTGGTAGCATTGCCAAAGCAACAgcgagaagaggagagaggaggtaCTACAGAGTCTGTGAGTCAGGTCTTGTTGCTGAAGCCAAGAGATCTTCTGCTGCTGTTTACTCTGGACCCCAGGGATGGATCAATGCTCACACACATAAATGCCAGACTTGAATTGAaccgggtttttttttttgcagtgggtCCTTACAGAGGCACAGACACAGGAAAGCAGGATGTGGTATTGAATGCATGCCTTTTATGAGCGTTGGTTTGCGGGTATAACAGGGGCTCTCAGGTGAGCAGGGTTAACTTGAAACCAACCTGTAAAGTGACTCCATGACACCAGCGCGTgcctatatatatgtgtgtgggtgtgtatgtgtgtgatggtTACATactgtgtatgagtgtgtgtatatgtttatgttGAGCTGCAAATGGCCAggtgcatatactgtatggtgTGTTTGTGACACCGGcgtcagaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgtcaggaGGAAGTGACACGTCTGTGCTCGATCTCGGATTTCCTGGTCCCCTCTCTGGTGGCACGCAGAGCGTTGAATCTGAGCCGAGTTCACCTGTCTCGCCCTCACAGGCGGGACTTAAACTCTTCTGGATGCATCAACAGAGGACCGCTGACTTTTCTGGATGAGTAAAGGGCAGTTAGTAGCGCGTGTACTCTGATTGTGGCTGAGTCACATCAGCCCTGCGTTTTCGAGATAAACCAGCACTTCCTCAAGCTGTCAACGTGCTGCTCTGGTGCTGCGCCGGTGCCGGAGGCCGTCTCTGGACCTCTTCATGACTGTCAATACAGTGCTGACCCCCTCCATGACAAGCAGTAACAGCATGAGCAGCGGGTACTGCAGCCTGGATGAAGAAAGCGAAGACTTCACTTTCTTCACAGCCAAGACCTCGTTCTTCCGCCAGCCCAAGCATGCAGCTAAGCAGAAGGAAGCAAAGGAGGAAGATGGAAGAGGAACAAAGGGCCTGTCAGAAGAAGAGGTGCGGACAAGGATAGAAGAGTATAACGCTCAAGTCTCTGAAACTGGCATGAAACTGGCTTCAGACGGATCCTACACAGGCTTCATCAAGGTCCATCTGAGGCTCAGTCGACCAGTCACAGTCCCCGCTGTGGAGGCGGCGGACTCAGAGGGAGCGTCCAGGCAGACGGCTGGCCGCACTCAAGCGCTGTCAGAGTGCCAGGAAGGGACGGACTTTGGGCAGAGCCAAAAGAGAACATCCTTCTACCTACCGTGCGACTGTGTCAAGCAGATCCACATTAGCTCTCTGACCACCACCAGAGAGGTCATCCAAGGTTTGCTGAAGAAGTTCATGGTGTTGGACAATCCCCGCAAGTTTGCAttgtacagacagacacaccgcGATGGACAGGATCTGTTCCAGAAGCTTCCTCTGTGTGAGTGTCCTCTTCTTCTGAGGTTGATAGCAGGGCCTGACCCAGAGCAGCTCAGCTTTGTCCTTAAGGAAAATGAGACTGGAGAGGTGGAgTGGCATGCGTTCTCTGTCCCTGAGCTGCACAACTTCCTGGTAATCCTGGGGAAAGAAGAGGCGGAGCGCATACGGGCAGTGGAGCAAAAATACACTGTGTACAGACAGAAACTACAACAAGCCCTACAACAACATGACCCCTGACCCCTTCACCTGTTACCTTACGACCTCAACCCAGGGAGAGACTGACCCTCTAAACGCTGACCCTTCAAGACCCGTGATCTATTCAGAGACTGGAGCCAGAGCTGAACTCATCTCTCCACCCTCCACACATAGAcccaaacatacagtacattcacaCATAGATGCATACCCTTTCTCAGGACGCATACAAGCCCACCCAACCATCGACACAAACGCTCCCCGAGGAGAGAATCAGGGGTTGAAAGCGACATGAAAGGCTACAGGGGTGTGTCGTCTGATAGCTGGTTGGATAAGCAGAGTTTTCATTgccaaggacacacacagaaagatcaGAGCAACACAAGATCTGAAACTCCGACTTGAGATCTCATTTGGGACTGATATGaatcatttgtgtttttaaagataccctcttattcttcttcttctgctgctgctgctgctgctgctgctactgcaaGTGTTACTTATGCATGAGTCTCTCTCAGCTCATCCCCCTGCACATAGAGTTAGAAGTCACACAGAAGGCATGATTACTTTTTGACAGGACAATCATATGGAGTGttcttttgatttgatttttcttggaaTTGATGTATAGGGTTATCACCAGATGTATTATTTTTATGCTGGAATATAAGACGTGTGGATTTGTGAGAGAGTTGTTTTTGGGTCAGGGtcaagaagaaaggaaagaataAGAAAATTATCAGAGGATGGATCTTGCCATTCTCTGTTTTTTCTCAGGGACCATGCGTTGGGCAAAGGAGGAAAAGGAACCAAATTCCACCCTACAAcaccccacttttttttttgcccactTTGTCCAAAATCTCAgcgtttttttaatttgttgctatcattttattttcctaCTTTAATGCCATGTGAAAAGCTGCTGTCAGGAGCTTCGCTGACAGAAAGATCTTCAAACCAAACCATTTACCCGATCCACAAACCTAAACTCTTCTCAGATAACTGTGATTTCATTTTCCCTCCCTAAATCCTGACCCCAACCTTGCTTGACCTGCTGAGCAAGGCAATCCACATACTTTTACAGAATTTACACTTTATTGTTAAAGTGATTTTACACTGTTAGTATATGGGTTTCATTTGAATGtcagagggttttttttttcttcaccaaAGCTTAGAGGGACAgaagattttaaatggatgaGAGACATTAGGAAGTTTATCTAATTTAAAGGTGgcgtatgtaaaaaaaattaaaccatcTTCTGTTTTTGCACATTTGGATGCAGGTCACTGAATAGCCCACAACTCTGGGGCTGGGCATGCatttctgcttctcttttcttgtcattttttcctctttttcaacTCCCCATCTTCcacccaaaaaaagaaacaaaaatatattaaattaatgATAATGGCTATGATGTACCAATGACGTGTTTGCAATGCATATGTATTATGTAgacactggaaaaaaaagtgacaaggtTAAACTTTGTTATTGCaatgaatattgatattattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcaatGTGAATTATTataagtgtgtatgtgtcatcGGCGCTCCCTCATTGGGCCTCACTTATCAACTATTAAAACATTAATTGAGTGCACAtgtaatataacgcattacaACTGCAAATTAGGTTGTTTTGGAAAAGCTATTTGGCATGCATGTATCATAAAATGAATGCATTTAACCAAAGCATTTAGTGTAAACATTTCCCACACACCCTGAGATAAATGAGGCTCGTCGTCCATAAGCACATGCTTCTCAGTAAACCCAaacctgttctttttttttttttttaacgccaCCACCCAAAGCCCAAGCTGTTCCTGCTGGCAGTGCCTTTTGTTTCATGTGCCCCTGTGGATCTATGTAAGGTGTGTTTCAGCACACAGGTGCCTGAGTGTATGTGTGGGCGCTTTTGCAAGTGTGCAAAAATCTGTGTTTCTTGGGTGGTGTCATTTTTTCGTTCTTTGCCCTACCCTTAACACATTTGTCTTTCCAacaaaacctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgaggtgCGTGTTATTTATTTCACGGTCCACGTCATCCATATGAAATAATGTCAAGGATGTTGAGacttaatgctttttttttttgcaatttattttttttttatttgaaaaagtgTGTATAATTATAGCAGTAGAACTGTACAGaatatcacaatgaaataaaaaggtCATCCCTTTATTGAAA

Function

symbol description
rassf5 Predicted to act upstream of or within intracellular signal transduction and regulation of apoptotic process. Predicted to be located in cytoplasm and microtubule. Orthologous to human RASSF5 (Ras association domain family member 5).

NR:

description
PREDICTED: ras association domain-containing protein 5 isoform X3

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0046872 metal ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039797307.1 True 4258 mRNA 0.45 5 13964299 13976366

Neighbor

gene id symbol gene type direction distance location
LOC120557194 NA coding upstream 8403 13943758 ~ 13955896 (+)
ikbke ikbke coding upstream 23000 13920513 ~ 13941299 (+)
srgap2 srgap2 coding upstream 45284 13857761 ~ 13919015 (+)
tmem183a tmem183a,LOC102794008 coding upstream 508250 13446291 ~ 13456049 (+)
myog myog coding upstream 581657 13380120 ~ 13382642 (+)
dyrk3 dyrk3 coding downstream 2370 13978736 ~ 13988512 (+)
mapkapk2a mapkapk2,LOC104959968 coding downstream 29990 14006356 ~ 14045222 (+)
fmoda LOC104959962,LOC103367868 coding downstream 136610 14112976 ~ 14119447 (+)
slc6a14 slc6a14,LOC103367878 coding downstream 145249 14121615 ~ 14132772 (+)
lrrn2 LOC104948560,LOC103359348 coding downstream 177765 14154131 ~ 14164411 (+)
LOC120556887 NA non-coding upstream 187149 13775781 ~ 13777150 (+)
G38001 NA non-coding upstream 847727 13115654 ~ 13116572 (+)
LOC120556864 NA non-coding upstream 884412 13075419 ~ 13079887 (+)
G37980 NA non-coding upstream 891474 13071974 ~ 13072825 (+)
G37978 NA non-coding upstream 892429 13070171 ~ 13071870 (+)
G38163 NA non-coding downstream 15543 13991909 ~ 13992179 (+)
G38164 NA non-coding downstream 26596 14002962 ~ 14003187 (+)
G38206 NA non-coding downstream 68991 14045357 ~ 14045559 (+)
G38247 NA non-coding downstream 216737 14193103 ~ 14195417 (+)
G38274 NA non-coding downstream 317567 14293933 ~ 14294157 (+)
tfeb tfeb other upstream 435980 13456929 ~ 13528319 (+)
mdm4 mdm4 other upstream 591927 13319684 ~ 13372372 (+)
per3 per3 other upstream 634967 13305415 ~ 13329332 (+)
vamp3 vamp3 other upstream 660684 13296376 ~ 13303615 (+)
spcs1 spcs1 other upstream 756041 13205469 ~ 13208258 (+)
LOC120557956 nrn1,LOC104931831,LOC102785075,LOC100692329,LOC102195708,LOC102307414 other downstream 250731 14227097 ~ 14233537 (+)
LOC120557952 mettl21b other downstream 358794 14335160 ~ 14337760 (+)
cdk4 LOC107684003,LOC107701179 other downstream 764243 14740609 ~ 14757359 (+)
znf740a LOC107385642,LOC101469799,LOC102214350,LOC102304359,LOC103376569,LOC107082105,LOC100709046 other downstream 788931 14765297 ~ 14857069 (+)
G38517 NA other downstream 831986 14808352 ~ 14816436 (+)

Expression


Co-expression Network