rpn2 (rpn2,LOC102784465)


Basic Information

Item Value
gene id rpn2
gene name rpn2,LOC102784465
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 4893449 ~ 4903690 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039797321.1
ttgaaatgccaAATGTACAGCCGGATATTATACCTTTGATGACAGCTCACACTCTCAGACACCGGAAGCAATCGTCGGTTTTGGTGACGCTGCATTAGACTGCAAGACATGGACCGGTCTAGACTGTTCggcttcttcctcctcctcagcctggctcttTCTGGGGCTCAGGCGCTCACCCCGGCGCACTACCTCTCCTTGTCGGATGTTGCCCGACTGCAAAACCTCCTGAGCCAACAGTTCACGGATCTGGACTCCGCATACTACTCTGTTGTTGGTCTGACCAAGCTTGGAGCAACTGTTCCTGATCACGAGGGAGTATGCCAGTTTCTAAAATCCCAGCTGGATCCCTCTAGTGTTGACTCTCTCTTCTTTGCTGCTGAGACCAGTCAAGCCATTTCAGGATGTGAGATCCCTGTGTCCAATGAAACCCGCGACATCCTCCTGGCAGCAGTGAGCGAAGATTCGACCATGACTCAGATTCACAGAGCCGTGAGCGCCCTCAGCTCTCTGGGGCTTCCTCTGGCTTCCCAGGAAGTTGTAGGTGCCTTGACGGGGCGCATCAACAAGGAGGACAATGTTATGGCTATCACTTCAGCTCTGCAAACAGCAGCCCGCCTGTCCCAGCAGGCCGAACTTGGAGGAATACTGGAGGAAATTGAAGATCTGACCGCTCGTTTGGATGATCTTGGCGGCATCTACCTCCAGTTTGAAGAGGGACTTGAGGCGACTGCCATGTTTGTGACCGCTGCTTATTCCCTGTCGGATCATGTAGACATGGAGCCCCCTCTGAAGGAGGACCAGGTCATCCAGCTGGTGAACTCTATCTTCAGCAAGAAATCCTGGGACTCTCTGGCCGAGGCCTTCAGCGTGGCAAGTGCTGCCGCTGCTCTGTCCAACAACCGCTTCCATGTGCCGGTCATTGTCAGTGCTCAGGGCCCAGCCACAGTGTCCCACAGCCAGCCAACCCTGcagCTCCTTGTTACTGATGTCATGTCTCAACCTTTGGCCTTAGCCAACGTGCTGGTGGAATCTGCGTACGCTGTGGCCTCCAAGAGCATCATTCTCAGCCAATCTCCATTCACACTTAATGATGGCGTCTTTGAACTGAACTTCATGTCCAACCAGCCAGCCAGTGGATACTACCAGTTTACCATTGCAGTGACCGGAGATACCCGGCTTGTTGCCAATCATGTTGAGCTTAAAGTGAAGGTGTCCACTGAGGTGGCTGTCACCAACATGGACCTCTCCGTGGTGGATAAGGACCAGAGCATCGGCACAAAGACCATCAGGGTGGACTATCCTTCCAAAGCCAAGAGCTCCTTCACAGCAGACAGCCACCAAAACTTTGCTATGTCATTCCAGCTGGTTGATGTCAACACTGGGGTGGAGCTTACCCCTCACCAGACTTTTGTCCGCCTGCACAATCAGAAAACTGGCCAAGAAGTTGTGTTTGTGGCTGAACCCGACAGCAAAAATCTGTACAAGTTTGAGTTGGACACAGCAGAGCGGAAATCCGAGTTTGACTCCATGTCTGGCACCTATTCCCTCCACCTCATCGTTGGGGATGCTACCTTGGAGAATCCCATTTTATGGAACGTGGCTGATGTTGTTCTGAAGTTTGTGGATGAGGAGGCCCCAGCGACCATTCAGCCCAAGACTCTTTATGTACCCAAACCAGAGATCCAGCACCTATTCAGGGAGCCAGAGAAGAAGCCTCCCACAGTGGTTTCCAATACCTTCACTGCACTCATCCTGTCTCCCTTCCTGCTTATGCTCATCCTGTGGTTTAAGCTCGGAGCCAACATCTCCAACTTCAGCTTCTCTCCCAGCACCGTTCTGTTCCATGTAGGACACGCAGCCACGCTGGGCCTCATGTACGTCTACTGGACTCACCTGAACATGTTCCAGACTCTGAAGTACCTGGCGATTATCGGCGGGGTGACTTTCCTCGCCGGGAACCGCATGCTGGCCCAGAAAGCAGTGAAGAGGATTGCAGCAGAGCAAAGTAGTAGGTTGGCAAAGTATAGGAGCCTACGATAAAGCCCCCATTTGTAACAAATGAGTCGGTCGTGTTTCCAGGCTGAAaATTGAGAAAAAATAAGAGCACGAAAAGTAAAAAGAAGGCACTGACGAAGCTCATTTTTTGTTTCCAAGGAGTCATTCAACGACGCATCAAATCAGACTTTAAAACACGGCGCGGCAGTTCAAGAATCCAGTTTAAACATGCGTTCGTCTGTGTTGCCAAAAGGAAGAAATCGAGAAATCACAGCGTCTCTGAGGACAAACCCTCACTGACAGATACTCTCACTGACGGCTGAAAGCTACTGATCATTGCACTTCATCTTCCTGCGAGATTTGTTTTCTTATTGTCCAACATGCCAGTGTTTTCTAAGTGAGCtgggtttttttatttgtggttTCTTGATGGATTTTGGgtttatttgtgctttttttttttttttttgtacattccTCTTTTTTCGCTCAATGCTCATTTCACCTCGTAACAGAAACTGTTAGTTCACTTGTTTCAGCTGATAAAAATAAACCCATTGGCAGTAGCACTGAAACATTGAACGTTACTTACTATGCCAGTGTGTTTGCCTGTTTGGTGCATCAGATGTGCGGTAGTCTCCAATTTGATACGGAGTTGGCGTTCCCCAGAAAAATTGTTAATAAGGAAATATGGGCTATTTGAGGAAGTGATGTTTTTTGTAATGAAGAAGAGGAAATAAAGAAATTGAGGTGAA
>XM_039797322.1
ttgaaatgccaAATGTACAGCCGGATATTATACCTTTGATGACAGCTCACACTCTCAGACACCGGAAGCAATCGTCGGTTTTGGTGACGCTGCATTAGACTGCAAGACATGGACCGGTCTAGACTGTTCggcttcttcctcctcctcagcctggctcttTCTGGGGCTCAGGCGCTCACCCCGGCGCACTACCTCTCCTTGTCGGATGTTGCCCGACTGCAAAACCTCCTGAGCCAACAGTTCACGGATCTGGACTCCGCATACTACTCTGTTGTTGGTCTGACCAAGCTTGGAGCAACTGTTCCTGATCACGAGGGAGTATGCCAGTTTCTAAAATCCCAGCTGGATCCCTCTAGTGTTGACTCTCTCTTCTTTGCTGCTGAGACCAGTCAAGCCATTTCAGGATGTGAGATCCCTGTGTCCAATGAAACCCGCGACATCCTCCTGGCAGCAGTGAGCGAAGATTCGACCATGACTCAGATTCACAGAGCCGTGAGCGCCCTCAGCTCTCTGGGGCTTCCTCTGGCTTCCCAGGAAGTTGTAGGTGCCTTGACGGGGCGCATCAACAAGGAGGACAATGTTATGGCTATCACTTCAGCTCTGCAAACAGCAGCCCGCCTGTCCCAGCAGGCCGAACTTGGAGGAATACTGGAGGAAATTGAAGATCTGACCGCTCGTTTGGATGATCTTGGCGGCATCTACCTCCAGTTTGAAGAGGGACTTGAGGCGACTGCCATGTTTGTGACCGCTGCTTATTCCCTGTCGGATCATGTAGACATGGAGCCCCCTCTGAAGGAGGACCAGGTCATCCAGCTGGTGAACTCTATCTTCAGCAAGAAATCCTGGGACTCTCTGGCCGAGGCCTTCAGCGTGGCAAGTGCTGCCGCTGCTCTGTCCAACAACCGCTTCCATGTGCCGGTCATTGTCAGTGCTCAGGGCCCAGCCACAGTGTCCCACAGCCAGCCAACCCTGcagCTCCTTGTTACTGATGTCATGTCTCAACCTTTGGCCTTAGCCAACGTGCTGGTGGAATCTGCGTACGCTGTGGCCTCCAAGAGCATCATTCTCAGCCAATCTCCATTCACACTTAATGATGGCGTCTTTGAACTGAACTTCATGTCCAACCAGCCAGCCAGTGGATACTACCAGTTTACCATTGCAGTGACCGGAGATACCCGGCTTGTTGCCAATCATGTTGAGCTTAAAGTGAAGGTGTCCACTGAGGTGGCTGTCACCAACATGGACCTCTCCGTGGTGGATAAGGACCAGAGCATCGGCACAAAGACCATCAGGGTGGACTATCCTTCCAAAGCCAAGAGCTCCTTCACAGCAGACAGCCACCAAAACTTTGCTATGTCATTCCAGCTGGTTGATGTCAACACTGGGGTGGAGCTTACCCCTCACCAGACTTTTGTCCGCCTGCACAATCAGAAAACTGGCCAAGAAGTTGTGTTTGTGGCTGAACCCGACAGCAAAAATCTGTACAAGTTTGAGTTGGACACAGCAGAGCGGAAATCCGAGTTTGACTCCATGTCTGGCACCTATTCCCTCCACCTCATCGTTGGGGATGCTACCTTGGAGAATCCCATTTTATGGAACGTGGCTGATGTTGTTCTGAAGTTTGTGGATGAGGAGGCCCCAGCGACCATTCAGCCCAAGACTCTTTATGTACCCAAACCAGAGATCCAGCACCTATTCAGGGAGCCAGAGAAGAAGCCTCCCACAGTGGTTTCCAATACCTTCACTGCACTCATCCTGTCTCCCTTCCTGCTTATGCTCATCCTGTGGTTTAAGCTCGGAGCCAACATCTCCAACTTCAGCTTCTCTCCCAGCACCGTTCTGTTCCATGTAGGACACGCAGCCACGCTGGGCCTCATGTACGTCTACTGGACTCACCTGAACATGTTCCAGACTCTGAAGTACCTGGCGATTATCGGCGGGGTGACTTTCCTCGCCGGGAACCGCATGCTGGCCCAGAAAGCAGTGAAGAGaATTGAGAAAAAATAAGAGCACGAAAAGTAAAAAGAAGGCACTGACGAAGCTCATTTTTTGTTTCCAAGGAGTCATTCAACGACGCATCAAATCAGACTTTAAAACACGGCGCGGCAGTTCAAGAATCCAGTTTAAACATGCGTTCGTCTGTGTTGCCAAAAGGAAGAAATCGAGAAATCACAGCGTCTCTGAGGACAAACCCTCACTGACAGATACTCTCACTGACGGCTGAAAGCTACTGATCATTGCACTTCATCTTCCTGCGAGATTTGTTTTCTTATTGTCCAACATGCCAGTGTTTTCTAAGTGAGCtgggtttttttatttgtggttTCTTGATGGATTTTGGgtttatttgtgctttttttttttttttttgtacattccTCTTTTTTCGCTCAATGCTCATTTCACCTCGTAACAGAAACTGTTAGTTCACTTGTTTCAGCTGATAAAAATAAACCCATTGGCAGTAGCACTGAAACATTGAACGTTACTTACTATGCCAGTGTGTTTGCCTGTTTGGTGCATCAGATGTGCGGTAGTCTCCAATTTGATACGGAGTTGGCGTTCCCCAGAAAAATTGTTAATAAGGAAATATGGGCTATTTGAGGAAGTGATGTTTTTTGTAATGAAGAAGAGGAAATAAAGAAATTGAGGTGAA

Function

symbol description
rpn2 Predicted to be involved in protein N-linked glycosylation. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be part of oligosaccharyltransferase complex. Is expressed in female organism. Orthologous to human RPN2 (ribophorin II).

NR:

description
dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2-like isoform X2

GO:

id name namespace
GO:0006487 protein N-linked glycosylation biological_process
GO:0008250 oligosaccharyltransferase complex cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K12667 SWP1, RPN2; oligosaccharyltransferase complex subunit delta (ribophorin II)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039797321.1 True 2753 mRNA 0.49 18 4893449 4903690
XM_039797322.1 False 2656 mRNA 0.49 17 4893449 4903690

Neighbor

gene id symbol gene type direction distance location
mybl2b mybl2 coding upstream 670 4881206 ~ 4892779 (+)
ift52 ift52,LOC102785231 coding upstream 13839 4875383 ~ 4879610 (+)
acot8 acot8,LOC102785802 coding upstream 18175 4869714 ~ 4875274 (+)
ppp1r3db LOC104967763 coding upstream 96189 4793581 ~ 4797260 (+)
LOC120557706 LOC104933218,LOC100705047,LOC101475466 coding upstream 125757 4745444 ~ 4767692 (+)
LOC120556975 LOC103365933,LOC100695288,LOC105934533 coding downstream 52661 4956351 ~ 5043477 (+)
cntn3b cntn3,LOC100696343,LOC102785363 coding downstream 706320 5610010 ~ 5665053 (+)
pdzrn3b pdzrn3 coding downstream 890042 5793732 ~ 5905163 (+)
shq1 shq1 coding downstream 1053581 5957271 ~ 6013954 (+)
LOC120557997 eif4e3,LOC103355441 coding downstream 1214942 6118632 ~ 6132639 (+)
G36035 NA non-coding upstream 13055 4851254 ~ 4880394 (+)
G36034 NA non-coding upstream 43411 4849754 ~ 4850038 (+)
G36026 NA non-coding upstream 45229 4807691 ~ 4848220 (+)
G36025 LOC107550338,LOC103365918,LOC104947949,LOC106955159 non-coding upstream 83471 4805045 ~ 4809978 (+)
G36022 NA non-coding upstream 92465 4799971 ~ 4800984 (+)
G36044 NA non-coding downstream 34272 4937962 ~ 4940271 (+)
G36051 NA non-coding downstream 113962 5017652 ~ 5018636 (+)
G36054 NA non-coding downstream 150741 5054431 ~ 5054972 (+)
G36105 NA non-coding downstream 330693 5234383 ~ 5234591 (+)
G36106 NA non-coding downstream 372763 5276453 ~ 5278682 (+)
G35921 NA other upstream 307974 4487535 ~ 4585475 (+)
LOC120557928 NA other upstream 360587 4529833 ~ 4532862 (+)
G35791 LOC101072424,LOC104921976 other upstream 943321 3948834 ~ 3950128 (+)
epha8 epha8,LOC102791453 other upstream 1303837 3453600 ~ 3589612 (+)
G35618 NA other upstream 1534629 3244231 ~ 3358820 (+)
cdk5rap1 cdk5rap1 other downstream 8009 4911699 ~ 4934164 (+)
G36156 LOC103374102 other downstream 1017234 5920924 ~ 5924400 (+)
rybpb rybp other downstream 1131382 6035072 ~ 6055216 (+)
prok2 prok2,LOC103355444 other downstream 1200923 6104613 ~ 6107152 (+)
foxp1b foxp1 other downstream 1235773 6139463 ~ 6306143 (+)

Expression


Co-expression Network