LOC120557218 (rbm39,LOC106937047,LOC103363772,LOC103131234)


Basic Information

Item Value
gene id LOC120557218
gene name rbm39,LOC106937047,LOC103363772,LOC103131234
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 44500044 ~ 44510159 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039797336.1
TCGCGGGAGGAAGGTCTCGCGATAACAGCCGAGATAACGGAAAACGCCATTTGAAGCACGTCGCGAGGGCACTGACCGACCGAGTGACCGTTAACCGGACTGTTCTTTCCGCTCCAAGCCGCTGTGTGTCCAGcccagCAGCAGGATGGCAGATGACCTGGACATTGAAGAGATGCTGGATGCTCCCTACAGGAAGGATGAACCCAAGAACCTGAGCCCCAACGGAGAGGAGGAACGAACCAAGAAGAAGAAGCGCAGCCGCAGCCGTGACAAGAAGCGCAGCCGGAGTCGAGACAGGAAGCGCAGCCGCAGCAGAGAGCGTAAACGCAGCCGCAGCCGAGACAAGAGAAGAAGTCGCAGCAGAGAGCGCCGCGGCAGTAGAGAGAGGGGCGGCCGCTACCGAGACCACCACAAGCACCGGCGGCGGTCCAAGAGTAAGAGTCCCGTGAGGAAGGAGAAGAGTCCCGTCAGGCTCCCCGTAGATACGCTGACTCCAGAGGAGCGGGACGCCCGCACCGTGTTCTGCATGCAGCTGGCGGCCAGGATCCGCCCCAGAGACCTGGAGGACTTCTTCTCCGCTGTGGGGAACGTTCGGGATGTGAGGATGATCTCTGACAGGAACTCGCGCAAGTCGAAGGGCATCGCCTACATCGAGTTTGTGGAGGCAACATCAGTTCCTCTCGCCATCGGGCTGACGGGGCAAAGGCTGCTGGGAGTTCCCATCATCGTACAGGCCTCACAGgcGGAGAAGAACAGAGCggctgcagcagctgctgccaACAGCCTGCAGAAGGGATCTGCGGGACCGATGAGGCTTTACGTCGGCTCTCTGCACTTCAACATCACCGAGGAGATGCTGAGAGGAATCTTTGAGCCATTTGGACGGATTGAGAGCATCCAACTGATGATGGACAGTGCCACGGGAACCTCTAAAGGTTACGGCTTCATCACTTTTTCAGACGCCGACTGTGCCCAGAAAGCGATGGAGCAGCTGAACGGCTTTGAGCTGGCGGGTCGGCCGATGAAAGTTGGAAACGTGACGGAGCGGACCGACTCCTCGGCCTCGTTCCTCGACAGCGACGATCTGGAACGCTCCGGCATCGACCTTGGGACCACCGGACGCCTGCAGCTGATGGCCCGGCTCGCTGAGGgttcAGGTCTACAGATGCCTCCAGCTGCCCAGCAGGCTCTGCAGATGAGTGGAGTGATCGCTATCGGAGCCATGGCTGCTGtgtcagCTGCGATGAATCCGGGTCTCAACATGAACTCTGGTGCGATGAATCTTCCCTCTCAGCCGCTCGCTACACACTGCTTCCAGCTCTCCAACATGTTCCACCCCAACAGtgagAAGCCTCCTGGCTGGGAGGTGGATATACAGCATGATGTCATCGAGGAATGTAACAAACATGGAGGAGTCGTCCACGTCTACGTCGACAAAAACTCTGCACAGGGAAACGTTTACGTTAAGTGTCCGTCGATCCCTGCCGCCATGGCCGCCGTCAACGCTCTGCACGGCCGATTCTTTGCCGGGAAGATGATCACGGCGGCGTTCGTCCCTCTGCCGGCCTACCACCACCTCTTCCCGGAGTCTGCCACAGCCAGTCAGCTGCTGGTCCCGCCCACTCGGCGGTGACTGGCCAATCAGCTTCTGGCCCCGCCCATGTGGTGGTGACTGGCCTCCAATTGGACACTGGACCCTTTTATACCCTGCTCTCCTATTGGTCGACAGAGGAGTCGGTCTGAAGGACACCGCCACCGCGTGTTTCCCTCTTCCTGTTTCCTTTCGCTGTTTCTCATTAGCATATCTGAGTATCGACCAATGATTGAGCTCCGTGAGCTGCGAGGACGCCGGCTGATTGGCTGGTTTGAAGCCGTTTGGTATTTAAGTGTTTTGTAATCAAGAATTTGGTTTTGTAAAAGcctttattaaattttattttgaagtcat
>XM_039797337.1
AGGAAGGTCTCGCGATAACAGCCGAGATAACGGAAAACGCCATTTGAAGCACGTCGCGAGGGCACTGACCGACCGAGTGACCGTTAACCGGACTGTTCTTTCCGCTCCAAGCCGCTGTGTGTCCAGcccagCAGCAGGATGGCAGATGACCTGGACATTGAAGAGATGCTGGATGCTCCCTACAGGAAGACTTGCCTAACGATTTCTCACCTCTGCTCCCCTGACTGCCAGTGTGATCTGTCACAGACATGAAGGATGAACCCAAGAACCTGAGCCCCAACGGAGAGGAGGAACGAACCAAGAAGAAGAAGCGCAGCCGCAGCCGTGACAAGAAGCGCAGCCGGAGTCGAGACAGGAAGCGCAGCCGCAGCAGAGAGCGTAAACGCAGCCGCAGCCGAGACAAGAGAAGAAGTCGCAGCAGAGAGCGCCGCGGCAGTAGAGAGAGGGGCGGCCGCTACCGAGACCACCACAAGCACCGGCGGCGGTCCAAGAGTAAGAGTCCCGTGAGGAAGGAGAAGAGTCCCGTCAGGCTCCCCGTAGATACGCTGACTCCAGAGGAGCGGGACGCCCGCACCGTGTTCTGCATGCAGCTGGCGGCCAGGATCCGCCCCAGAGACCTGGAGGACTTCTTCTCCGCTGTGGGGAACGTTCGGGATGTGAGGATGATCTCTGACAGGAACTCGCGCAAGTCGAAGGGCATCGCCTACATCGAGTTTGTGGAGGCAACATCAGTTCCTCTCGCCATCGGGCTGACGGGGCAAAGGCTGCTGGGAGTTCCCATCATCGTACAGGCCTCACAGgcGGAGAAGAACAGAGCggctgcagcagctgctgccaACAGCCTGCAGAAGGGATCTGCGGGACCGATGAGGCTTTACGTCGGCTCTCTGCACTTCAACATCACCGAGGAGATGCTGAGAGGAATCTTTGAGCCATTTGGACGGATTGAGAGCATCCAACTGATGATGGACAGTGCCACGGGAACCTCTAAAGGTTACGGCTTCATCACTTTTTCAGACGCCGACTGTGCCCAGAAAGCGATGGAGCAGCTGAACGGCTTTGAGCTGGCGGGTCGGCCGATGAAAGTTGGAAACGTGACGGAGCGGACCGACTCCTCGGCCTCGTTCCTCGACAGCGACGATCTGGAACGCTCCGGCATCGACCTTGGGACCACCGGACGCCTGCAGCTGATGGCCCGGCTCGCTGAGGgttcAGGTCTACAGATGCCTCCAGCTGCCCAGCAGGCTCTGCAGATGAGTGGAGTGATCGCTATCGGAGCCATGGCTGCTGtgtcagCTGCGATGAATCCGGGTCTCAACATGAACTCTGGTGCGATGAATCTTCCCTCTCAGCCGCTCGCTACACACTGCTTCCAGCTCTCCAACATGTTCCACCCCAACAGtgagAAGCCTCCTGGCTGGGAGGTGGATATACAGCATGATGTCATCGAGGAATGTAACAAACATGGAGGAGTCGTCCACGTCTACGTCGACAAAAACTCTGCACAGGGAAACGTTTACGTTAAGTGTCCGTCGATCCCTGCCGCCATGGCCGCCGTCAACGCTCTGCACGGCCGATTCTTTGCCGGGAAGATGATCACGGCGGCGTTCGTCCCTCTGCCGGCCTACCACCACCTCTTCCCGGAGTCTGCCACAGCCAGTCAGCTGCTGGTCCCGCCCACTCGGCGGTGACTGGCCAATCAGCTTCTGGCCCCGCCCATGTGGTGGTGACTGGCCTCCAATTGGACACTGGACCCTTTTATACCCTGCTCTCCTATTGGTCGACAGAGGAGTCGGTCTGAAGGACACCGCCACCGCGTGTTTCCCTCTTCCTGTTTCCTTTCGCTGTTTCTCATTAGCATATCTGAGTATCGACCAATGATTGAGCTCCGTGAGCTGCGAGGACGCCGGCTGATTGGCTGGTTTGAAGCCGTTTGGTATTTAAGTGTTTTGTAATCAAGAATTTGGTTTTGTAAAAGcctttattaaattttattttgaagtcat
>XM_039797338.1
TCGCGGGAGGAAGGTCTCGCGATAACAGCCGAGATAACGGAAAACGCCATTTGAAGCACGTCGCGAGGGCACTGACCGACCGAGTGACCGTTAACCGGACTGTTCTTTCCGCTCCAAGCCGCTGTGTGTCCAGcccagCAGCAGGATGGCAGATGACCTGGACATTGAAGAGATGCTGGATGCTCCCTACAGGAAGGATGAACCCAAGAACCTGAGCCCCAACGGAGAGGAGGAACGAACCAAGAAGAAGAAGCGCAGCCGCAGCCGTGACAAGAAGCGCAGCCGGAGTCGAGACAGGAAGCGCAGCCGCAGCAGAGAGCGTAAACGCAGCCGCAGCCGAGACAAGAGAAGAAGTCGCAGCAGAGAGCGCCGCGGCAGTAGAGAGAGGGGCGGCCGCTACCGAGACCACCACAAGCACCGGCGGCGGTCCAAGAGTAAGAGTCCCGTGAGGAAGGAGAAGAGTCCCGTCAGGCTCCCCGTAGATACGCTGACTCCAGAGGAGCGGGACGCCCGCACCGTGTTCTGCATGCAGCTGGCGGCCAGGATCCGCCCCAGAGACCTGGAGGACTTCTTCTCCGCTGTGGGGAACGTTCGGGATGTGAGGATGATCTCTGACAGGAACTCGCGCAAGTCGAAGGGCATCGCCTACATCGAGTTTGTGGAGGCAACATCAGTTCCTCTCGCCATCGGGCTGACGGGGCAAAGGCTGCTGGGAGTTCCCATCATCGTACAGGCCTCACAGgcGGAGAAGAACAGAGCggctgcagcagctgctgccaACAGCCTGCAGAAGGGATCTGCGGGACCGATGAGGCTTTACGTCGGCTCTCTGCACTTCAACATCACCGAGGAGATGCTGAGAGGAATCTTTGAGCCATTTGGACGGATTGAGAGCATCCAACTGATGATGGACAGTGCCACGGGAACCTCTAAAGGTTACGGCTTCATCACTTTTTCAGACGCCGACTGTGCCCAGAAAGCGATGGAGCAGCTGAACGGCTTTGAGCTGGCGGGTCGGCCGATGAAAGTTGGAAACGTGACGGAGCGGACCGACTCCTCGGCCTCGTTCCTCGACAGCGACGATCTGGAACGCTCCGGCATCGACCTTGGGACCACCGGACGCCTGCAGCTGATGGCCCGGCTCGCTGAGGgttcAGGTCTACAGATGCCTCCAGCTGCCCAGCAGGCTCTGCAGATGAGTGGAGTGATCGCTATCGGAGCCATGGCTGCTGtgtcagCTGCGATGAATCCGGGTCTCAACATGAACTCTGGTGCGATGAATCTTCCCTCTCAGCCGCTCGCTACACACTGCTTCCAGCTCTCCAACATGTTCCACCCCAACAGtgagAAGCCTCCTGGCTGGGAGGTGGATATACAGCATGATGTCATCGAGGAATGTAACAAACATGGAGGAGTCGTCCACGTCTACGTCGACAAAAACTCTGCACAGgtgacagtgtgacctctgacctctgcttGTTTCCAGGGAAACGTTTACGTTAAGTGTCCGTCGATCCCTGCCGCCATGGCCGCCGTCAACGCTCTGCACGGCCGATTCTTTGCCG

Function

symbol description
rbm39 Enables RNA binding activity. Involved in regulation of mRNA splicing, via spliceosome. Located in centriolar satellite and nuclear speck. Part of protein-containing complex.

NR:

description
PREDICTED: RNA-binding protein 39 isoform X1

GO: NA

KEGG:

id description
K13091 RBM23_39; RNA-binding protein 23/39

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039797336.1 False 1948 mRNA 0.58 14 44500044 44510159
XM_039797337.1 True 2006 mRNA 0.57 15 44500051 44510159
XM_039797338.1 False 1565 mRNA 0.59 13 44500044 44508482

Neighbor

gene id symbol gene type direction distance location
LOC120557215 mkrn2os coding upstream 13283 44482825 ~ 44486761 (+)
LOC120557212 NA coding upstream 147826 44350407 ~ 44352218 (+)
amigo3 NA coding upstream 279888 44216413 ~ 44220156 (+)
LOC120558025 LOC102289652,LOC101467503,LOC103368898 coding upstream 392353 43895634 ~ 44107691 (+)
nicn1 nicn1,LOC103371623 coding upstream 921039 43568609 ~ 43579005 (+)
isy1 LOC106531751,LOC101464245,LOC102301427 coding downstream 17212 44527371 ~ 44533309 (+)
zgc:77375 NA coding downstream 23248 44533407 ~ 44545229 (+)
pcif1 pcif1,LOC102784095 coding downstream 35875 44546034 ~ 44566401 (+)
LOC120558028 dnttip1 coding downstream 58702 44568861 ~ 44575579 (+)
ube2c ube2c coding downstream 66799 44576958 ~ 44580943 (+)
G45636 NA non-coding upstream 109843 44361162 ~ 44390201 (+)
G45640 NA non-coding upstream 126890 44370811 ~ 44373154 (+)
G45634 NA non-coding upstream 141477 44358292 ~ 44358567 (+)
G45612 NA non-coding upstream 152793 44274062 ~ 44347251 (+)
G45597 NA non-coding upstream 329999 44168532 ~ 44170045 (+)
G45831 NA non-coding downstream 204014 44714173 ~ 44714690 (+)
G45863 NA non-coding downstream 296551 44806710 ~ 44807403 (+)
G45873 NA non-coding downstream 313369 44823528 ~ 44824784 (+)
LOC120556889 NA non-coding downstream 329903 44840062 ~ 44841232 (+)
tsen2 tsen2,LOC102785813 other upstream 748 44488956 ~ 44499296 (+)
G45635 NA other upstream 31053 44360786 ~ 44468991 (+)
G45647 NA other upstream 92595 44403903 ~ 44407449 (+)
G45577 NA other upstream 542871 43956827 ~ 43957173 (+)
G45557 NA other upstream 661192 43838384 ~ 43838852 (+)
LOC120557302 kcnq2,LOC107384874,LOC103370155,LOC108251245 other downstream 202256 44712415 ~ 44744790 (+)

Expression


Co-expression Network