txnrd3 (LOC103366329,LOC102309132,LOC105934676)


Basic Information

Item Value
gene id txnrd3
gene name LOC103366329,LOC102309132,LOC105934676
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 4708681 ~ 4729627 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039797343.1
TATAATGGTGACTCAGATCAAGTGCACCCTTAGTAGCAAGAGAAGAAATGGTAAAATAGGTTTGGCGCGGCTGGTAGACTAGCAGCTGAGTGCAGAGGCAGAGAAACCTAGGTCAAATCCGCGGTCCAGCTGCTTTTTAGTATTTAAGGCGGGCCGAGAGACATTCGTACATTTACTAAGAGAGACTTGGTCCGGTTTAATTTGGGGTTCACCCTCAGTCTCTTGTCAGCCGTCTATTGAAGCTTGCCCTGCGCAGGCAGACGGGAATACCTTGAAAATGCCTCCCATCGATAATGACACCGGGAAGAACGAACTCAAATGTCGGATACAGCAGCTTATTGACTCCAATCAAGTGATGGTTTTCAGTAAAAGCTACTGTCCGTTTTGTATCAAGGTGAAAGACTTGTTCAAAGAGCTGCAAGTCGATTGTAATGTGGTGGAGTTGGATCTCATAGAGGATGGAACTAACTACCAGGAGATGCTGCTCGAGATGACCGGACAAAAAACTGTTCCTAATGTCTTCATCAACAAGACGCACGTTGGCGGCTGTGACAACACAATGAAGGCTCATAAAGACGGCAGCCTGCAGCAGCTACTGAGCAATAATGAAGCTTATGACTACGACCTGATAGTCATCGGAGGAGGCTCTGGGGGCCTGGCCTGCTCAAAGGAAGCTGCTGCATTGGGGAAGAAGGCCATGGTACTGGACTATGTTGTGCCAACACCAAAAGGAACAACCTGGGGTAAGTCACTCATGTGTCTTTTTTGGGGTAgaatgttttttgtaatttttttaaacatctgcaTTCCCAAGAAGCTGATGCACCAGACGGCCGTGCTGGGCACCGCCATGCAGGACGCACGCAAGTTCGGCTGGGAGTTTGACGAGACAGTGAAGCACAACTGGGAGACGATGAAGACGGCGGTGAACAACTACATTGGCTCGCTGAACTGGGGCTACAGGGTGGCACTGAGAGACAAGAATGTCAACTATGTCAATGCCTATGCAGAGTTCATTGAACCACACAAAATCAAGGCAACAAACAAACGGGGGAAGGAGACCTTTTACACAGCGGCCAAGTTTGTCTTGGCTACAGGCGAGAGGCCGCGCTACCTGGGCATCCCTGGAGACAAGGAGTACTGTATCACCAGTGACGACCTCTTCTCGTTGCCCCACTGCCCGGGAAAGACCCTTGTGATCGGGGCATCGTACGTGGCTCTGGAGTGCGGTGGTTTCCTGGCCGGCCTGGGTCTCGATGTCACCATCATGGTCCGGTCCATCCTGCTGAGGGGCTTCGACCAGGACATGGCCAACCGTGCCGGAGAGCACATGGAGGAGCACGGTGTCAAGTTCCTCCGCAAATACGTCCCTGTAAAGatagAGGAGCTGGAAGCAGGCACTCCTGGCAAGCTGAAGGTGACAGCCAAGTCCACAGAAACCGATGAGCTCATCGAGGGAGAGTACAACACTGTGTTGATAGCAGTGGGCCGAGACGCGTGCACAGACAAGGTTGGCCTGGACAAGGCAGGGGTCAAAGTCAACCCCAAGAATGGAAAGATTTCAGTCAACGATGAAGAGCAGACCAATGTGCCCCACATCTACGCCATTGGAGACATTCTGGACGGCAAGTGGGAGCTGACTCCTGTAGCCATCCAGGCTGGCAAGCTGCTGGCACGACGCCTCTACGGGGGCTCAACGCTTAAGtGCGACTATGTCAACGTTCCCACCACTGTCTTCACCCCACTGGAGTACGGCTCCTGTGGTCTGTCAGAGGACAGAGCCACCGAGCTCTATGGGCAGGACAACCtggagGTGTTCCACAGTCTGTTCTGGCCTCTGGAGTTCACCGTGCCCGGcagagacaacaacaaatgctACGCTAAGATCATCTGCAATAAACTGGACAACGATCGAGTCATTGGGTTCCACTATCTGGGTCCAAATGCTGGAGAGGTGACGCAGGGCTTCGGTGTAGCCATGAAATGTGGTGCCACCAAGGAGCAGCTGGACTCCACCATCGGCATCCACCCAACCTGTGCTGAGATCTTCACCACTCTGGATGTAACCAAGAGCTCTGGGGGAGACATCACCCAGTCCGGCTGCTGAGGTTAAACCCTGCGCGTTTAGCGGGCTGCTCTCATATTAGGCTCTCCTACCAACTCCTCTCATCTTAGTTTTTAAAGCTCCGCCTCCCCTCCAGCTGCTCCGTCTACAGGGCAGTTGTTTCTCAGGACAAACGTAACACCGTGGCCAGCGTCTGAATGAGCCTCGAGGCGACTGAAAGAATCCAGAGCTGAGGATGTGCAAGTCTCCAGCTCTGGCTGAGGTAGTTTGATATGAGGGCAGCCTGCTGAACAGCGGGGTTACTCTGCTGCTATTTCTCCTGGGCTCCACTAGTGTGTCCTTCTCAGAGgagcaccaacacacacactctactactgagaacgtgtgtgtgtttgggctgTTTGTGACGTCCTAGCCCGTAACCTGAAATACTCGGGTGGGCGAGGATCGATGTCCCTCTGCAGAAGCGCCTGGCGGGGGCCCAAACCCTTCGTCCAACTCCCAACTTCAAACACTTCTCATCCACCCCCCAGTATACAGATTCCATACGGACTGGAATTGACTTCAATAAGACATTAAAATGTGCACACAACCAGGGTTTGAATGGATGCACGGCTCTGAACTCTGGTCCAGCTTGTGATGGAAACCTTCTGTAATCTGGTCTGTCTGTGCATGTATAGATTGACTGTCATCACGTCTTTTCTGTTGAGCCTTCACCATTCCACACATATTCCTCTTACCAGGTCTTTAGGATGAAATTGAGGCGCATACATGTTGCTGTCAATATGCGTCTTTTGCTATGTGGAGGCACTGGGggttttctgccttttttaaaGAGAACTATCTttacagggttcatacgttttgaaaaaacctggaaaagttatggaatttgaaaaatgcaaattccaggcctggaaaggttttggaaacctaaaaagacccagaaagttttgggaaagtcatgtaatgtttttttttaacacagcataataatgtcattaataaatgtattttcacgttGTCTTAACCTCAACGTTGTATTCGGGGAGAGATATGATTAATCCATctatgaaccacagacattatcattcatgttatagttaaacctctgagggtaaactttaacaccgatttgtattcttattgtataatgtcgactgacattttcaggaacacatagtcatggaaatttgccaaaaagtcatggaaaagtattggttaaaatgcgtatgaaccctgtcTTGATCTCTTCCAAAGTATTTCTCTAAACAAGTCTGCAGAGAGATCATGAGTCGGCACCTTTCCAACCTTGATGTGCTGCATCACAACCCTTTCAGATAAAATTTAATGGAAAATACAACCGGAATTGTAccgaatgtttaaaaaaaagaaaccttttCTAAATTAAGTTAATGCTTGTTTGTTGCATCTTGCTGTTTGCCTCTgctttatgtgtatgtataaagATCTGTTCAATCTTCTAGAGGACGGCGTTCCAGCTGCTGTCGGTCATCTGTATGAATGACTTGTTTGTTGGTGTCAGACCGCTGTAGATGACTTCTCTCTAAAGATTTAATAAAGACTGAATTCTCCTTCA

Function

NR:

description
PREDICTED: thioredoxin reductase 1, cytoplasmic-like

GO:

id name namespace
GO:0045454 cell redox homeostasis biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0004791 thioredoxin-disulfide reductase activity molecular_function
GO:0009055 electron transfer activity molecular_function
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0050661 NADP binding molecular_function
GO:0015035 protein disulfide oxidoreductase activity molecular_function

KEGG:

id description
K22182 TXNRD; thioredoxin reductase (NADPH)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039797343.1 True 3665 mRNA 0.48 16 4708681 4729627

Neighbor

gene id symbol gene type direction distance location
LOC120558218 NA coding upstream 24337 4681878 ~ 4684344 (+)
LOC120557508 NA coding upstream 123324 4584329 ~ 4585357 (+)
LOC120557502 LOC105888650,LOC101068541,LOC107388332,LOC103395674,LOC105896821 coding upstream 137146 4569910 ~ 4571535 (+)
LOC120557505 LOC104935308,LOC104932967 coding upstream 149213 4558575 ~ 4559468 (+)
LOC120557506 NA coding upstream 150906 4556761 ~ 4557775 (+)
LOC120557706 LOC104933218,LOC100705047,LOC101475466 coding downstream 15817 4745444 ~ 4767692 (+)
ppp1r3db LOC104967763 coding downstream 63954 4793581 ~ 4797260 (+)
acot8 acot8,LOC102785802 coding downstream 140087 4869714 ~ 4875274 (+)
ift52 ift52,LOC102785231 coding downstream 145756 4875383 ~ 4879610 (+)
mybl2b mybl2 coding downstream 151579 4881206 ~ 4892779 (+)
G35958 NA non-coding upstream 14116 4691055 ~ 4694565 (+)
G35942 NA non-coding upstream 91284 4615893 ~ 4617397 (+)
G35941 NA non-coding upstream 95677 4610538 ~ 4613004 (+)
G35925 LOC104957620,LOC100698470,LOC102194894,LOC101473847,LOC102310675,LOC102787480 non-coding upstream 98621 4605460 ~ 4610060 (+)
G35834 NA non-coding upstream 338460 4369919 ~ 4370221 (+)
G36022 NA non-coding downstream 70344 4799971 ~ 4800984 (+)
G36025 LOC107550338,LOC103365918,LOC104947949,LOC106955159 non-coding downstream 75418 4805045 ~ 4809978 (+)
G36026 NA non-coding downstream 78064 4807691 ~ 4848220 (+)
G36034 NA non-coding downstream 120127 4849754 ~ 4850038 (+)
G36035 NA non-coding downstream 121627 4851254 ~ 4880394 (+)
G35921 NA other upstream 123206 4487535 ~ 4585475 (+)
LOC120557928 NA other upstream 175819 4529833 ~ 4532862 (+)
G35791 LOC101072424,LOC104921976 other upstream 758553 3948834 ~ 3950128 (+)
epha8 epha8,LOC102791453 other upstream 1119069 3453600 ~ 3589612 (+)
G35618 NA other upstream 1349861 3244231 ~ 3358820 (+)
cdk5rap1 cdk5rap1 other downstream 182072 4911699 ~ 4934164 (+)
G36156 LOC103374102 other downstream 1191297 5920924 ~ 5924400 (+)
rybpb rybp other downstream 1305445 6035072 ~ 6055216 (+)
prok2 prok2,LOC103355444 other downstream 1374986 6104613 ~ 6107152 (+)
foxp1b foxp1 other downstream 1409836 6139463 ~ 6306143 (+)

Expression


Co-expression Network