shisa4 (shisa4,LOC102788956)


Basic Information

Item Value
gene id shisa4
gene name shisa4,LOC102788956
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 23256518 ~ 23265863 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039797348.1
GGCAACACCATCCTCGTCTCGTCCCGGGTGAACGGCGTCATAGACGCAATGTGTCATTTCGACGGATAAATTACCGCTTGTAAAAGCCGTCCCGTCTCCTATGCTGTTCCCGAGCCAGGATCATGTCTGTGAACGACCGTTAGTCCGGTTATATTTGTACATCTTTAGAATATCGCTCGCTTGGTTTTGAATTAGGACGAGGATGATCTTTCCAGCGGGCAACATGTCCCTCATCGCGCTGATTTTAGCGCTGCTCACCATCGTCCTCTGCACTTCTCAGGTCAGTGCCAACGAGGACTGTCTGTGGTACGTGGATAAAAATGGCACCTGGCACAACGGCTTTGACTGCCCTCTCATCACGTTTTGCTGTGGGAACTGCCACCGGCGCTACTGCTGCCTGGACGCCTTTAAAATGATCCCCGAGAGGGAGCAGAAACGCTGCATGCTCTTCCAGTTCAGcCCCACCACTTTAGCTGGCATTGCCTCTTCCGTCCTCCTGTTTGTGGCGATCATTGCGACCATGGTCTGCTGCTTCATGTGCTCCTGCTGTTACCTCTACCAGAGAAGGCAGCAGAGGGGCAGGACACCTTATGATGTCCAGCAGATCCCCATGGCCAGCTATCCAGTGGAGCCCATGTATGATGCTTATGGAAAACCACTGGGACCCTCTGAGTATCCACATGCAGGTTATCCAATGGCGCCCCTGTACACTGGCATGCCTCCGCATTACCCGATGATGCAGCCTGGACCTTATCCACCACACCTGATGGATCCTGCATACAGCCAGGCCCCTCCACCTTACTCTCCACCTCAGTATCCTGGTCATTGATGGGCTCATCTAcactacacacatgcacacacacagagtgggaAACAACAGCAACTGAGAGAAAGGACTGTTTCAAAAGGAGAAGGCAGcaacactctctctcacactcaaacacacatgcacacactcaaacGCTACAGCTCGACTAGCAGTGGTTTGTCTGTTTAAGAGAACTGGAGGCACTTTAAGGTTTTTCTATGTTTATTTACTGTACAATGTTGTCCTACTTTTCTGGAGTATTTACGCAACTCAAATTGTGTTCTGCAACCAGACACCTGATTGCTCCCGGCGGGTTTTGCAGAGACGTCACACCATCCCTAAAGTGAGGAGGTATCTGGCTGGCGTCTCGACTCTGTGCTGCCACTTGTGCTCTGACACACTTACCTCAAAAACAGGGTGTCACCTTACAGAACAGGGGTCAGAAGGGGATCATAAAAAATGATAATGCACTccctctttatttatataaaaggcAAACATGCTTTACTTCCTCACTTTTGTTAAATTTTAATGAGTTGATACCTCCCTAAGGCTACATTCTTGGTCACACACTCTCCAAATATGATGACATGAtgtctttatttctgtttttgatttttttttttttttttttcccataatgTGTTAGAGactaaagtgaaaaataaacGGCATGTTTGATTAAAAAGGTGACATGTATGTTCAAAGGCAGTGTGACACAGGATTTCATGTTACTCCTGATTACGCGTAAGAAGCCTTTAGTCACCTGCTAGTTTCAACTTTGTCTATTCTTTTATGTATCTGGCTCGACTAATTTACTTCATGGTAGTATATTAGCTGCTTAATTCTAATGTAACATCTCAACATCAGCATGCTACCCCAGTCAAAGTTATCTGTTCTctcttgcttttttttctggttttaaatGAATTAGAAGTCTTTAGATTAATCCCATGATGCCATTTGGTATGTTTTCCAGTGAAATTCATGTTAAATTGTTATTTCTTGTAACATATGTCAGGGGAGTTGCAGGTCATGCTGCTTGGTTTAAACAAAATGTCCCGCCTTAGAAAAATTAACCACGACAAAAAAGGGATTAActatttaaatacatattttgtataTCTGTTCTTCAGCTGAATATTTTATGATATTGTAACAAGTTATTTTAAACataatgtattgttattgtaacATAACATATGATGTTTTAGCATTTTTGGCATCTTTCCATTTGGTATTTGTTATTATTGAGGTTACCTTTTTCTGTGAATGGGTTCTCCCCTTGTGGACTTGTGGTCAGAAaaagttgattttttttctgaccaCGTCACTTTAAAGTaccagtttgacattttgggaaatatgcttatttgctttcttgtttaGAGTTAgatgaagaaaataaataccATTCTCCACAGATATcatggtatcaatcttctcatcattACTCTTCAAAAAAACTGATAGGtgtatgtcaaactattcctttaattcaCACTTAAGGTTTCGGGTCCCAGTGAGGTCAGGGCCTGTAACCTGCAATTATAGTTTAGCAGTCTAGTTTAGCATCTTGGACAGCCCTGTGCTTTTTGGAACTTGTAAAACATGACATCTCAAGCATGTGTTGTACAGTAAGATGTCTGACTAATGGGTAATAATTATCTTTATTCAGGTGTGATGTATCTCAATCTCAAAGTCAAATGAAACAAAacactgtcctcatgctgatcAGAGAAGCCTGAAGCTTTTCCTCGAGACATACTGCTGTATCttgtctctaaaaaaaaaaaaaaaaaaggaaaaaaaagaactagtACTGCTAGTTTACAGCATAAATTGTTTCCTCCCATGGTGACGTCCATTTGTACAGATTTGTTGAGCCTTTGTGAAGCACAGAGAACACTGGACTTTTCTTGGTAAGATGCTTTCATATGTAGTTCGACATAACATTTGATCAAtgatgtttctgtttgtttgtgcttCTAGACCAACTCCATGAGTGTGTTTACTGAAACTGACATCAGTTGGCAAAATAACTTGTCTAGATCTATGgtgttttgtctgttgtcatATGACATTGTAATATAAAGTGAGTGAAAAGTTTTTATTTCTATTAACATAAAATTTAACTTTGGAATGTAAAAATA

Function

symbol description
shisa4 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SHISA4 (shisa family member 4).

NR:

description
PREDICTED: protein shisa-4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039797348.1 True 2961 mRNA 0.41 5 23256518 23265863

Neighbor

gene id symbol gene type direction distance location
ipo9 ipo9 coding upstream 2300 23234327 ~ 23254218 (+)
LOC120557748 LOC103355891,LOC100710082 coding upstream 42659 23182449 ~ 23213859 (+)
slc32a1 slc32a1,LOC102787607,LOC100693191 coding upstream 102848 23149075 ~ 23153670 (+)
LOC120556778 arhgap40 coding upstream 129866 23106818 ~ 23126652 (+)
shmt2 LOC103359782,LOC102307393 coding upstream 320951 22909436 ~ 22935567 (+)
lmod1b lmod1 coding downstream 986 23266849 ~ 23271555 (+)
timm17a timm17a,LOC102789540 coding downstream 8566 23274429 ~ 23280729 (+)
LOC120557228 rap1b,rap1a,rap1ab,LOC105901888,LOC106566052,LOC107560426,LOC107742898 coding downstream 16279 23282142 ~ 23307066 (+)
cttnbp2nla cttnbp2nl,LOC102311171,LOC100709543 coding downstream 207485 23473348 ~ 23487987 (+)
LOC120557289 wnt2b,LOC104945808 coding downstream 227889 23493752 ~ 23504705 (+)
G41126 NA non-coding upstream 991 23254942 ~ 23255527 (+)
LOC120557222 NA non-coding upstream 23560 23232172 ~ 23232958 (+)
G41118 NA non-coding upstream 40723 23214158 ~ 23215795 (+)
G41114 LOC104933616,LOC107385352,LOC103355892,LOC103464385 non-coding upstream 84212 23163529 ~ 23172306 (+)
G41112 NA non-coding upstream 94700 23159286 ~ 23161818 (+)
G41207 NA non-coding downstream 15074 23280937 ~ 23281193 (+)
G41220 NA non-coding downstream 71470 23337333 ~ 23358085 (+)
G41231 NA non-coding downstream 101522 23367385 ~ 23368351 (+)
G41291 NA non-coding downstream 570835 23836698 ~ 23836903 (+)
G41308 NA non-coding downstream 580930 23846793 ~ 23847938 (+)
itga7 itga7 other upstream 1263907 21950376 ~ 21992611 (+)
vgll4b vgll4 other upstream 1912807 21295102 ~ 21343711 (+)
G40353 rassf1,LOC102778369 other upstream 3107828 20148104 ~ 20148690 (+)
abhd14b abhd14b other upstream 3332969 19917889 ~ 19923549 (+)
cenps LOC103362653,LOC103137101,LOC103464519 other upstream 3397177 19851548 ~ 19859341 (+)
cbfa2t2 cbfa2t2 other downstream 469085 23734948 ~ 23771932 (+)
znfx1 NA other downstream 582184 23848047 ~ 23867512 (+)
bloc1s1 bloc1s1,LOC102796612 other downstream 1289662 24555525 ~ 24560318 (+)
slc12a5a LOC103355988 other downstream 1942293 25208156 ~ 25310553 (+)
slc16a1a slc16a1,LOC102208676,LOC102781600 other downstream 2416544 25682407 ~ 25690935 (+)

Expression


Co-expression Network