lmod1b (lmod1)


Basic Information

Item Value
gene id lmod1b
gene name lmod1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 23266849 ~ 23271555 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039797349.1
CCAGCCTCACAGTCCACTTTGATGATGCGAGGCTCTTGCAGTTCATCAGTGCTACCCCTCACTCCAAGACTGAGAGTCCAGCCTCTTTGCATCAGGATTGATGCCTCTGATGTTTTTTTGGTGAGCGGGACGCGACGGGACAGCAGGACACCAGCTTTGGCCAGCTTTGGGAATACTCAAATTCTCACCATAGGAGAGAAATTTCTAAATAATCAGATTTAAATAAAGAGATTTACTATACTAACACCCTCAGCCCCTCCAAAGGAACCAAATTTCTCTATTTTTCTCTACGGGCTTTTACCCCAGATTTTTTTAGGCAACCATGTCCAGGAGAAAGGTGAGAGGCCTGACCCGTACAGGCCGCCAGGTCAGCGAGGACCCAGATCTGGACAACCTGCTGTCCACCCTCTCCCCTGAGGAGATGGAGGAGCTGGAGAAGGACATGATGAAAGTGCCAGACATCAAGCCAGAGGATGGGAAGATCATTGTCCAAGGGGATAGCCAAGCTGCGCAGCCACCTATGAGCAACAATGTCCGGGACGCTAAACTTGACAGCAGACAGGAGAGTGACCGAAAAGGGAGGCTCAGTGAGAGGGAACAGTCATTTGAGGGTGAGACAAAGAAGGAGAGCCGGAAGCAGGCATATCTGAGGAAGATGGGCCTGAGCCAAGAGGGGAACGACGACGTGGCAGTTGGGCTACGAAGACAAGCTAGTGTCTCAAGTGAACGAGATATTAAGGTGGACGAAAGAAACAGCAAAGGTCCTGAAAGTTCGAAAGAGGAGCGAAGTCGGCTTTCGAGTAGATACAGGAAGCAGGAAAGTAGAGAGTGTGAGGTGAAAGAGGAGACCAAAGAGAAGGAGAAACAAGAGGACAATAAGATaagagacaggagagaaaacagagagagcACAGGTAGCAAAACAAAGGATATGATCTCTAAGTTACAGGAAAAAAAGGATGAGAGGAAAGAAGACTGCAGGAGAAGAGATGAGAGCAAAACCAAAGACATTATCTCAAAGCTACGAGAGAAACATGAAAAGGAAGTGGGCaaggaaaaggagagaaaatcAGAGAGTTTTAAGACACAAGGACTTGTTTCTAAAATGTTGGAGAAGCAGAGCAAGGCACAAGACAGCCCGGCTCCAGAGAGTAAATCAGAAGAGAAGAAGCCCAAagcagaggagaaaagagcTGAAGATAAAAACAAGCCTGATGTCAAACTTGAGCGACAACCATCGGAGAGGGGCGAGGTGCAGGTGAAACATGACAAGGCAGAGaaaagaacagacagagaagagcTGGTTAACCATAGTGACCAcgtgaaagagaaggagaagaagattAGCAcggagaagaaaggagaggagaaaaaagacaaagaggagaGTAAAGGAAAAGTTCAAAAAGTAGAGGAAAGTGAGAAACCTGGCAACTGTGTGGCCAAAAACACCCCACAGAACAAGgcgaaagaggaagaggaggaggacgaagACTCAAGCATGTTTGACGAGCTGATGGAGCAGGTTCGGAGCAACGACCCCTCCCTCACTGAGCTCAACGTCAACAACTCAGAAGTCATCAAGACCAAAACACTCATCGAGTTTGCAGAGGCTTTGCACAAGAACACCCATGTTAAGACGTTTGCTTTGGCTAACTGCCGTGCAGACGACCATGTGGCTTATGCCATCGCGGGCACGCTACGCAGCAACAAGACTATCACCAGCATCAATGTGGACTCCAACCATCTCACTGGCAAGGGCATCCTGTCTATGATCCAGGCGCTACCACACAACTCCACACTGACTGAGCTTCGCTTTCAAAACCAGCGTCACGTCTGTGGCGGGAAGACGGAGATGGAGATGACCAAGATCCTGAAGGAAAACACCACCCTGCTCAAACTGGGCTACCACTTTGAGTTAGCTGGACCCAGAATGACTACAACAAACATACTGAGTCGCAACATGGACCGACAGAGGCAGAAGCGCCTGCAGGAGCAGAAGCAGGCCCAGGCCAATGGGGAGAAGAAGGGCACACTGGAGGTACCCAAGGTGGGTGGTGGAGGATCTCTGAGAAGCTCGCCCAGAGCTTCCCCCAAACCTTCTCCCATACCTTCACCTATGCCATCACCAAAGCTGACTCCTAAAAGAGGAGCTGGAGGTCCTGTTCCACCTCCACCCCCGCCTCCTCCTGGGGGTGGACCTCCACCTCCTCCGCCTCCTATGCTGGATGTAGACGCCCTGAGGAACTCTCTGACCCCGGTGTCACAGAGGAAGCTGGATGGAAAAAGCCCAAGCGGTTGTAAGAACTCAAGGGACCAACTGCTTGCCTCGATCAGAGGAAGCGATAAGAAACAACTCAAGAAGGTGCCGGTGCCAAAGTGGTTGCAGTAATATTTCCTATATGAAGTGAAAAATATGAAGTGAAAagtgaagagagagggagaatagAGATGAGATAAACTCAACACTCCTAAGATGCAGTCAAAGAACTGCGCCGTGGGACGGATGGAGAAAGTGAAACATGAGATGCCCATCGGTCAGATGACTAGCCCTCACTATGAGATCTCCCCAAAAACACTGGACCAAAAGGACTCTAGGGAGAATGGGTGATGCAGGGCTCTCTATTAGCCGACTGCATAGAGTGCCTTGAGTTTTGTGGTTGTTTGTCTTCAGTACATATTGACGCTTTGCTGGTTATTTGCACTAGATAATATGAAGCCGATCATATAACATGTTGGCTTGTGTATGCATCTGAATATGAGCGTGATGGGAATGTGTGATGAGCTTATTAAGATTTATAAATAACTTTATAAAATTCTAATAGACAAAAACTTTTATCAGTGATATAGTGGACATTAATTTGACCATATATTTTTTGTGGAGAGGAAATCCACCTTATACTTGTAAGTTGTAAATCTGTTCAAACTGGGAATTTTGAAATGGCGGAAATATCAGGGAATTAACTAACATGGCGGCCTGACTTAAAACAATCTGAGTAAGAAAAAAAGGTCATGgtggtctttgtgtgtctcattTCCAAATCTCAAGACATCTCAGGCAGGGTTTAATGGAAAGCAGCCCAGTGGAAATCCTGGTGCATGACGAAAGAGTTTGAGCATGGAAATAATTACAGAATGCATTTTTATCAGGAAGTGCAAATGGCTGTCCTTCAGTATCTGATGTTATTTTTTGTACAGAATCATTCTGCCTTGTTGTTTGAATACCTTACAAAACTTGTAATGTAATACACCCACATGTCTTAACCTTAGGGGGTTTTGTAAAACCATTACTGGCTTAAATCAACACTTCTGTTGATTTATGCCATACTTATAAGTGAATGTCATTTCAAAAAGGAATTTAATGTGATAAAAATCAGAGAGGCACTTATATGTGCACTCTGTAATGAAGGACTCTCTTTCATATCTGATTACACATGCTTTTCTTACAGAGCCTGTATGTCTTCAATAAAAGATTGTGGTATGTTTGCAATGACAAGTCACAAGTGTAATGTTA

Function

symbol description
lmod1 Predicted to enable tropomyosin binding activity. Involved in actin nucleation. Located in cytosol and myofibril.

NR:

description
leiomodin-1-like

GO: NA

KEGG:

id description
K22030 LMOD; leiomodin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039797349.1 True 3514 mRNA 0.46 3 23266849 23271555

Neighbor

gene id symbol gene type direction distance location
shisa4 shisa4,LOC102788956 coding upstream 986 23256518 ~ 23265863 (+)
ipo9 ipo9 coding upstream 12631 23234327 ~ 23254218 (+)
LOC120557748 LOC103355891,LOC100710082 coding upstream 52990 23182449 ~ 23213859 (+)
slc32a1 slc32a1,LOC102787607,LOC100693191 coding upstream 113179 23149075 ~ 23153670 (+)
LOC120556778 arhgap40 coding upstream 140197 23106818 ~ 23126652 (+)
timm17a timm17a,LOC102789540 coding downstream 2874 23274429 ~ 23280729 (+)
LOC120557228 rap1b,rap1a,rap1ab,LOC105901888,LOC106566052,LOC107560426,LOC107742898 coding downstream 10587 23282142 ~ 23307066 (+)
cttnbp2nla cttnbp2nl,LOC102311171,LOC100709543 coding downstream 201793 23473348 ~ 23487987 (+)
LOC120557289 wnt2b,LOC104945808 coding downstream 222197 23493752 ~ 23504705 (+)
tox2 tox2,LOC104948894,LOC108231505 coding downstream 300047 23571602 ~ 23665613 (+)
G41126 NA non-coding upstream 11322 23254942 ~ 23255527 (+)
LOC120557222 NA non-coding upstream 33891 23232172 ~ 23232958 (+)
G41118 NA non-coding upstream 51054 23214158 ~ 23215795 (+)
G41114 LOC104933616,LOC107385352,LOC103355892,LOC103464385 non-coding upstream 94543 23163529 ~ 23172306 (+)
G41112 NA non-coding upstream 105031 23159286 ~ 23161818 (+)
G41207 NA non-coding downstream 9382 23280937 ~ 23281193 (+)
G41220 NA non-coding downstream 65778 23337333 ~ 23358085 (+)
G41231 NA non-coding downstream 95830 23367385 ~ 23368351 (+)
G41291 NA non-coding downstream 565143 23836698 ~ 23836903 (+)
G41308 NA non-coding downstream 575238 23846793 ~ 23847938 (+)
itga7 itga7 other upstream 1274238 21950376 ~ 21992611 (+)
vgll4b vgll4 other upstream 1923138 21295102 ~ 21343711 (+)
G40353 rassf1,LOC102778369 other upstream 3118159 20148104 ~ 20148690 (+)
abhd14b abhd14b other upstream 3343300 19917889 ~ 19923549 (+)
cenps LOC103362653,LOC103137101,LOC103464519 other upstream 3407508 19851548 ~ 19859341 (+)
cbfa2t2 cbfa2t2 other downstream 463393 23734948 ~ 23771932 (+)
znfx1 NA other downstream 576492 23848047 ~ 23867512 (+)
bloc1s1 bloc1s1,LOC102796612 other downstream 1283970 24555525 ~ 24560318 (+)
slc12a5a LOC103355988 other downstream 1936601 25208156 ~ 25310553 (+)
slc16a1a slc16a1,LOC102208676,LOC102781600 other downstream 2410852 25682407 ~ 25690935 (+)

Expression


Co-expression Network