LOC120557228 (rap1b,rap1a,rap1ab,LOC105901888,LOC106566052,LOC107560426,LOC107742898)


Basic Information

Item Value
gene id LOC120557228
gene name rap1b,rap1a,rap1ab,LOC105901888,LOC106566052,LOC107560426,LOC107742898
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 23282142 ~ 23307066 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039797354.1
TCATGCAAATGATGCGGTGCGAGTGGCTGATGTGTCATGCCCTTTTAAGAAAAATGAGAAATAGTCGGGAGTGACGTCTGCTGCGCACAGAGGCCGGAGGCAAACTGACACTTGCGGAGCGGCGAGAGACAGCGAGCGAGAAACGACTGTTGGGCTGTCCGGTGAAGCAAACCCGCCATGCGTGAATACAAGCTAGTGGTGTTAGGCTCTGGAGGCGTGGGCAAGTCCGCTCTGACAGTTCAGTTTGTACAGGGAATCTTTGTGGAAAAATATGACCCTACAATAGAAGACTCGTACAGAAAGCAAGTGGAGGTAGATGGGCAGCAATGTATGCTTGAAATTCTTGACACAGCAGGCACAGAGCAGTTCACAGCAATGAGGGACTTGTACATGAAGAACGGCCAAGGCTTCGCCCTGGTATACTCCATCACAGCACAGTCCACCTTTAACGACCTCCAGGACCTGAGAGAACAGATTCTACGAGTAAAGGACACAGAGGATGTGCCGATGATCCTGGTGGGGAACAAGTGCGACTTGGAGGATGAGCGTGTGGTGGGAAAGGAACAGGGCCAGAACCTGGCCAGACAGTGGAACCACTGTGCCTTTTTAGAGTCCTCTGCTAAGTCAAAGATCAACGTCCTCGATATCTTCTATGACCTGGTCAGACAGATAAATAGGAAAACGCCAGTGGAAAAGAAGAAGGCGAAAAAGAAATCCAATTGTGTCCTGCTTTAAAGACTCCCCTCCAGCCCCTGCAGCAGCTCTGAGCCAGAAATGCTGTAATGAAGAACTGTTGCCCTGATTGGAACGTGCCAGCATTCCAACAGCCCCACCCCACACCCTTCCCCTCCCTCCATCAGCCATAAACGGTGAATCAGCTGACTGAACTGCTCCTATCAAAGAAGAGGATGATCTACgccagagagatagacagagagagagatggagagagtaaagagagagaaagaaaagaccgtaagagagagagagagagagagaagactcTGGTCTCTCACCGCTGAGGACCTTCCTCTGTGTCTCCGTTTCAGTTTGAACCCTGAACGAACAGTCTCCATTTTCTGCACCAACAAACACCACAaatttatgatgatgatgataaaaagCCTctgaaagttttaaaaaaaagtgtccatGAGCTGCCTACATGGCCAGAGTGCAGCCcccttattttcattttttgacagttcaacaaaaagaaaaataacagcgttttaaaaagaaggaaaacaaaGTTAGAACTTGGATTCAgtatttttcatctttttcaATATCGTATTTGAAAGACATGGAAGTTGACCTCTTTTTAGTTGTATGATTATAAATATTCTTCAAATATGagcatgaaaaaaaatgcatcagTTATTAAGTGTAGATGTTTTCAAGTGAAATCAAGTGGAAGAgtgagaattattttttttttttatagccatACACCTATTCTCCATGCCTGTCATGTCAGTGATGATAGATCAAGGTCTataatatgtattatttttattctatATTTCTTTGTTCGCCCTGTTGTTCATGGACTTCTCTTCTGCGAATATCTCTCTCTGATGTGACTTAATTTTATACTCAGTCACTGGGATTTCATAGCTCCCATAATATATTCTAATGCCATTTTTTGCATAATAATGCTTCAGAAAAAAATGGGTCTTTTATAGAAGAAATATGGGGAAAATAAGGATTGATTTCTATGTCTCTTGAAGCTGAAATATATTATACTAAACCAACTCTAATAATGcttcttgtgtttttctgtcaaTGATGTTCCAGCTTTTATGGAttattaaagtacattttagtaCATTTTCATTA
>XM_039797355.1
GCGAGTGGCTGATGTGTCATGCCCTTTTAAGAAAAATGAGAAATAGTCGGGAGTGACGTCTGCTGCGCACAGAGGCCGGAGGCAAACTGACACTTGCGGAGCGGCGAGAGACAGCGAGCGAGAAACGTGCAGACTGTTGGGCTGTCCGGTGAAGCAAACCCGCCATGCGTGAATACAAGCTAGTGGTGTTAGGCTCTGGAGGCGTGGGCAAGTCCGCTCTGACAGTTCAGTTTGTACAGGGAATCTTTGTGGAAAAATATGACCCTACAATAGAAGACTCGTACAGAAAGCAAGTGGAGGTAGATGGGCAGCAATGTATGCTTGAAATTCTTGACACAGCAGGCACAGAGCAGTTCACAGCAATGAGGGACTTGTACATGAAGAACGGCCAAGGCTTCGCCCTGGTATACTCCATCACAGCACAGTCCACCTTTAACGACCTCCAGGACCTGAGAGAACAGATTCTACGAGTAAAGGACACAGAGGATGTGCCGATGATCCTGGTGGGGAACAAGTGCGACTTGGAGGATGAGCGTGTGGTGGGAAAGGAACAGGGCCAGAACCTGGCCAGACAGTGGAACCACTGTGCCTTTTTAGAGTCCTCTGCTAAGTCAAAGATCAACGTCCTCGATATCTTCTATGACCTGGTCAGACAGATAAATAGGAAAACGCCAGTGGAAAAGAAGAAGGCGAAAAAGAAATCCAATTGTGTCCTGCTTTAAAGACTCCCCTCCAGCCCCTGCAGCAGCTCTGAGCCAGAAATGCTGTAATGAAGAACTGTTGCCCTGATTGGAACGTGCCAGCATTCCAACAGCCCCACCCCACACCCTTCCCCTCCCTCCATCAGCCATAAACGGTGAATCAGCTGACTGAACTGCTCCTATCAAAGAAGAGGATGATCTACgccagagagatagacagagagagagatggagagagtaaagagagagaaagaaaagaccgtaagagagagagagagagagagaagactcTGGTCTCTCACCGCTGAGGACCTTCCTCTGTGTCTCCGTTTCAGTTTGAACCCTGAACGAACAGTCTCCATTTTCTGCACCAACAAACACCACAaatttatgatgatgatgataaaaagCCTctgaaagttttaaaaaaaagtgtccatGAGCTGCCTACATGGCCAGAGTGCAGCCcccttattttcattttttgacagttcaacaaaaagaaaaataacagcgttttaaaaagaaggaaaacaaaGTTAGAACTTGGATTCAgtatttttcatctttttcaATATCGTATTTGAAAGACATGGAAGTTGACCTCTTTTTAGTTGTATGATTATAAATATTCTTCAAATATGagcatgaaaaaaaatgcatcagTTATTAAGTGTAGATGTTTTCAAGTGAAATCAAGTGGAAGAgtgagaattattttttttttttatagccatACACCTATTCTCCATGCCTGTCATGTCAGTGATGATAGATCAAGGTCTataatatgtattatttttattctatATTTCTTTGTTCGCCCTGTTGTTCATGGACTTCTCTTCTGCGAATATCTCTCTCTGATGTGACTTAATTTTATACTCAGTCACTGGGATTTCATAGCTCCCATAATATATTCTAATGCCATTTTTTGCATAATAATGCTTCAGAAAAAAATGGGTCTTTTATAGAAGAAATATGGGGAAAATAAGGATTGATTTCTATGTCTCTTGAAGCTGAAATATATTATACTAAACCAACTCTAATAATGcttcttgtgtttttctgtcaaTGATGTTCCAGCTTTTATGGAttattaaagtacattttagtaCATTTTCATTA
>XM_039797356.1
AGCCCTCCGCTCTCTAATTTCAGTTTCCTGAAGTTTGAGACATAGTTTATCCAGACGCATTCGCTGCATATTCGTGCTAGCAACACCACCGATTCCAATTTCCAGCCTTAGATGGATGCATACCTTTGGCTGTAGAGGTGCAGACTGTTGGGCTGTCCGGTGAAGCAAACCCGCCATGCGTGAATACAAGCTAGTGGTGTTAGGCTCTGGAGGCGTGGGCAAGTCCGCTCTGACAGTTCAGTTTGTACAGGGAATCTTTGTGGAAAAATATGACCCTACAATAGAAGACTCGTACAGAAAGCAAGTGGAGGTAGATGGGCAGCAATGTATGCTTGAAATTCTTGACACAGCAGGCACAGAGCAGTTCACAGCAATGAGGGACTTGTACATGAAGAACGGCCAAGGCTTCGCCCTGGTATACTCCATCACAGCACAGTCCACCTTTAACGACCTCCAGGACCTGAGAGAACAGATTCTACGAGTAAAGGACACAGAGGATGTGCCGATGATCCTGGTGGGGAACAAGTGCGACTTGGAGGATGAGCGTGTGGTGGGAAAGGAACAGGGCCAGAACCTGGCCAGACAGTGGAACCACTGTGCCTTTTTAGAGTCCTCTGCTAAGTCAAAGATCAACGTCCTCGATATCTTCTATGACCTGGTCAGACAGATAAATAGGAAAACGCCAGTGGAAAAGAAGAAGGCGAAAAAGAAATCCAATTGTGTCCTGCTTTAAAGACTCCCCTCCAGCCCCTGCAGCAGCTCTGAGCCAGAAATGCTGTAATGAAGAACTGTTGCCCTGATTGGAACGTGCCAGCATTCCAACAGCCCCACCCCACACCCTTCCCCTCCCTCCATCAGCCATAAACGGTGAATCAGCTGACTGAACTGCTCCTATCAAAGAAGAGGATGATCTACgccagagagatagacagagagagagatggagagagtaaagagagagaaagaaaagaccgtaagagagagagagagagagagaagactcTGGTCTCTCACCGCTGAGGACCTTCCTCTGTGTCTCCGTTTCAGTTTGAACCCTGAACGAACAGTCTCCATTTTCTGCACCAACAAACACCACAaatttatgatgatgatgataaaaagCCTctgaaagttttaaaaaaaagtgtccatGAGCTGCCTACATGGCCAGAGTGCAGCCcccttattttcattttttgacagttcaacaaaaagaaaaataacagcgttttaaaaagaaggaaaacaaaGTTAGAACTTGGATTCAgtatttttcatctttttcaATATCGTATTTGAAAGACATGGAAGTTGACCTCTTTTTAGTTGTATGATTATAAATATTCTTCAAATATGagcatgaaaaaaaatgcatcagTTATTAAGTGTAGATGTTTTCAAGTGAAATCAAGTGGAAGAgtgagaattattttttttttttatagccatACACCTATTCTCCATGCCTGTCATGTCAGTGATGATAGATCAAGGTCTataatatgtattatttttattctatATTTCTTTGTTCGCCCTGTTGTTCATGGACTTCTCTTCTGCGAATATCTCTCTCTGATGTGACTTAATTTTATACTCAGTCACTGGGATTTCATAGCTCCCATAATATATTCTAATGCCATTTTTTGCATAATAATGCTTCAGAAAAAAATGGGTCTTTTATAGAAGAAATATGGGGAAAATAAGGATTGATTTCTATGTCTCTTGAAGCTGAAATATATTATACTAAACCAACTCTAATAATGcttcttgtgtttttctgtcaaTGATGTTCCAGCTTTTATGGAttattaaagtacattttagtaCATTTTCATTA
>XM_039797357.1
TGTGAAGCCCTCCGCTCTCTAATTTCAGTTTCCTGAAGTTTGAGACATAGTTTATCCAGACGCATTCGCTGCATATTCGTGCTAGCAACACCACCGATTCCAATTTCCAGCCTTAGATGGATGCATACCTTTGGCTGTAGAGGACTGTTGGGCTGTCCGGTGAAGCAAACCCGCCATGCGTGAATACAAGCTAGTGGTGTTAGGCTCTGGAGGCGTGGGCAAGTCCGCTCTGACAGTTCAGTTTGTACAGGGAATCTTTGTGGAAAAATATGACCCTACAATAGAAGACTCGTACAGAAAGCAAGTGGAGGTAGATGGGCAGCAATGTATGCTTGAAATTCTTGACACAGCAGGCACAGAGCAGTTCACAGCAATGAGGGACTTGTACATGAAGAACGGCCAAGGCTTCGCCCTGGTATACTCCATCACAGCACAGTCCACCTTTAACGACCTCCAGGACCTGAGAGAACAGATTCTACGAGTAAAGGACACAGAGGATGTGCCGATGATCCTGGTGGGGAACAAGTGCGACTTGGAGGATGAGCGTGTGGTGGGAAAGGAACAGGGCCAGAACCTGGCCAGACAGTGGAACCACTGTGCCTTTTTAGAGTCCTCTGCTAAGTCAAAGATCAACGTCCTCGATATCTTCTATGACCTGGTCAGACAGATAAATAGGAAAACGCCAGTGGAAAAGAAGAAGGCGAAAAAGAAATCCAATTGTGTCCTGCTTTAAAGACTCCCCTCCAGCCCCTGCAGCAGCTCTGAGCCAGAAATGCTGTAATGAAGAACTGTTGCCCTGATTGGAACGTGCCAGCATTCCAACAGCCCCACCCCACACCCTTCCCCTCCCTCCATCAGCCATAAACGGTGAATCAGCTGACTGAACTGCTCCTATCAAAGAAGAGGATGATCTACgccagagagatagacagagagagagatggagagagtaaagagagagaaagaaaagaccgtaagagagagagagagagagagaagactcTGGTCTCTCACCGCTGAGGACCTTCCTCTGTGTCTCCGTTTCAGTTTGAACCCTGAACGAACAGTCTCCATTTTCTGCACCAACAAACACCACAaatttatgatgatgatgataaaaagCCTctgaaagttttaaaaaaaagtgtccatGAGCTGCCTACATGGCCAGAGTGCAGCCcccttattttcattttttgacagttcaacaaaaagaaaaataacagcgttttaaaaagaaggaaaacaaaGTTAGAACTTGGATTCAgtatttttcatctttttcaATATCGTATTTGAAAGACATGGAAGTTGACCTCTTTTTAGTTGTATGATTATAAATATTCTTCAAATATGagcatgaaaaaaaatgcatcagTTATTAAGTGTAGATGTTTTCAAGTGAAATCAAGTGGAAGAgtgagaattattttttttttttatagccatACACCTATTCTCCATGCCTGTCATGTCAGTGATGATAGATCAAGGTCTataatatgtattatttttattctatATTTCTTTGTTCGCCCTGTTGTTCATGGACTTCTCTTCTGCGAATATCTCTCTCTGATGTGACTTAATTTTATACTCAGTCACTGGGATTTCATAGCTCCCATAATATATTCTAATGCCATTTTTTGCATAATAATGCTTCAGAAAAAAATGGGTCTTTTATAGAAGAAATATGGGGAAAATAAGGATTGATTTCTATGTCTCTTGAAGCTGAAATATATTATACTAAACCAACTCTAATAATGcttcttgtgtttttctgtcaaTGATGTTCCAGCTTTTATGGAttattaaagtacattttagtaCATTTTCATTA

Function

symbol description
rap1b Enables MAP kinase kinase activity. Acts upstream of with a positive effect on hematopoietic stem cell differentiation. Acts upstream of or within chordate embryonic development; convergent extension; and heart development. Located in cell-cell junction. Is expressed in several structures, including brain; cardiovascular system; floor plate; hindbrain neural plate; and mesoderm. Orthologous to human RAP1B (RAP1B, member of RAS oncogene family).
rap1ab Predicted to enable GDP binding activity; GTP binding activity; and GTPase activity. Acts upstream of or within convergent extension involved in gastrulation and embryonic cranial skeleton morphogenesis. Predicted to be located in membrane. Predicted to be active in plasma membrane. Orthologous to human RAP1A (RAP1A, member of RAS oncogene family).
rap1a Predicted to enable GTPase activity; guanyl ribonucleotide binding activity; and guanyl-nucleotide exchange factor activity. Involved in several processes, including Rap protein signal transduction; cellular response to cAMP; and regulation of neurotransmitter receptor localization to postsynaptic specialization membrane. Located in perinuclear region of cytoplasm. Is active in glutamatergic synapse.

NR:

description
ras-related protein Rap-1b

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0016020 membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K04353 RAP1A; Ras-related protein Rap-1A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039797354.1 True 1842 mRNA 0.42 8 23282142 23307066
XM_039797355.1 False 1829 mRNA 0.42 8 23282160 23307066
XM_039797356.1 False 1840 mRNA 0.42 8 23284871 23307066
XM_039797357.1 False 1840 mRNA 0.42 8 23284866 23307066

Neighbor

gene id symbol gene type direction distance location
timm17a timm17a,LOC102789540 coding upstream 1413 23274429 ~ 23280729 (+)
lmod1b lmod1 coding upstream 10587 23266849 ~ 23271555 (+)
shisa4 shisa4,LOC102788956 coding upstream 16279 23256518 ~ 23265863 (+)
ipo9 ipo9 coding upstream 27924 23234327 ~ 23254218 (+)
LOC120557748 LOC103355891,LOC100710082 coding upstream 68283 23182449 ~ 23213859 (+)
cttnbp2nla cttnbp2nl,LOC102311171,LOC100709543 coding downstream 166282 23473348 ~ 23487987 (+)
LOC120557289 wnt2b,LOC104945808 coding downstream 186686 23493752 ~ 23504705 (+)
tox2 tox2,LOC104948894,LOC108231505 coding downstream 264536 23571602 ~ 23665613 (+)
rbck1 rbck1 coding downstream 518660 23825726 ~ 23835968 (+)
LOC120558070 cdh22 coding downstream 665327 23972393 ~ 24165819 (+)
G41207 NA non-coding upstream 949 23280937 ~ 23281193 (+)
G41126 NA non-coding upstream 26615 23254942 ~ 23255527 (+)
LOC120557222 NA non-coding upstream 49184 23232172 ~ 23232958 (+)
G41118 NA non-coding upstream 66347 23214158 ~ 23215795 (+)
G41114 LOC104933616,LOC107385352,LOC103355892,LOC103464385 non-coding upstream 109836 23163529 ~ 23172306 (+)
G41220 NA non-coding downstream 30267 23337333 ~ 23358085 (+)
G41231 NA non-coding downstream 60319 23367385 ~ 23368351 (+)
G41291 NA non-coding downstream 529632 23836698 ~ 23836903 (+)
G41308 NA non-coding downstream 539727 23846793 ~ 23847938 (+)
LOC120556870 NA non-coding downstream 561305 23868371 ~ 23870584 (+)
itga7 itga7 other upstream 1289531 21950376 ~ 21992611 (+)
vgll4b vgll4 other upstream 1938431 21295102 ~ 21343711 (+)
G40353 rassf1,LOC102778369 other upstream 3133452 20148104 ~ 20148690 (+)
abhd14b abhd14b other upstream 3358593 19917889 ~ 19923549 (+)
cenps LOC103362653,LOC103137101,LOC103464519 other upstream 3422801 19851548 ~ 19859341 (+)
cbfa2t2 cbfa2t2 other downstream 427882 23734948 ~ 23771932 (+)
znfx1 NA other downstream 540981 23848047 ~ 23867512 (+)
bloc1s1 bloc1s1,LOC102796612 other downstream 1248459 24555525 ~ 24560318 (+)
slc12a5a LOC103355988 other downstream 1901090 25208156 ~ 25310553 (+)
slc16a1a slc16a1,LOC102208676,LOC102781600 other downstream 2375341 25682407 ~ 25690935 (+)

Expression


Co-expression Network